Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08650

Experiment: D-Raffinose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Raffinose 2.5 mg/ml (C)
1,081,706	+				+1.5
1,081,782	+		HMPREF1058_RS08655	0.18	-0.2
1,081,783	-		HMPREF1058_RS08655	0.18	+0.4
1,081,836	-		HMPREF1058_RS08655	0.25	+0.8
1,081,866	+		HMPREF1058_RS08655	0.29	+0.3
1,081,947	+		HMPREF1058_RS08655	0.39	-1.4
1,081,948	-		HMPREF1058_RS08655	0.39	-0.3
1,081,979	+		HMPREF1058_RS08655	0.43	+0.4
1,082,223	-		HMPREF1058_RS08655	0.74	-0.7
1,082,258	-		HMPREF1058_RS08655	0.79	+0.3
1,082,258	-		HMPREF1058_RS08655	0.79	-0.0
1,082,304	+		HMPREF1058_RS08655	0.85	-0.5
1,082,413	-				-0.1
1,082,453	-				-0.9
1,082,454	+				+0.1
1,082,486	-				-0.9
1,082,499	+				+0.0
1,082,523	+				-0.1
1,082,546	+				-0.3
1,082,553	+				-0.6
1,082,624	+				-4.8
1,082,666	+				-3.2
1,082,847	+		HMPREF1058_RS08650	0.24	-0.9
1,082,974	+		HMPREF1058_RS08650	0.36	-4.2
1,082,975	-		HMPREF1058_RS08650	0.36	-3.1
1,082,983	+		HMPREF1058_RS08650	0.37	-3.7
1,083,085	+		HMPREF1058_RS08650	0.46	-2.2
1,083,096	-		HMPREF1058_RS08650	0.47	-2.4
1,083,106	+		HMPREF1058_RS08650	0.48	-3.8
1,083,107	-		HMPREF1058_RS08650	0.48	-1.6
1,083,108	+		HMPREF1058_RS08650	0.48	-1.5
1,083,108	+		HMPREF1058_RS08650	0.48	-3.0
1,083,108	+		HMPREF1058_RS08650	0.48	-5.7
1,083,109	-		HMPREF1058_RS08650	0.49	-3.7
1,083,180	+		HMPREF1058_RS08650	0.55	-2.8
1,083,269	+		HMPREF1058_RS08650	0.63	-2.9
1,083,300	-		HMPREF1058_RS08650	0.66	-5.0
1,083,527	+		HMPREF1058_RS08650	0.87	-0.8
1,083,528	-		HMPREF1058_RS08650	0.87	-3.2
1,083,530	-		HMPREF1058_RS08650	0.87	-3.9
1,083,637	+				-3.4
1,083,637	+				-3.4
1,083,637	+				-2.8
1,083,638	-				-4.8
1,083,638	-				-4.3
1,083,638	-				-2.7
1,083,638	-				-2.8
1,083,638	-				-2.1
1,083,638	-				-5.4
1,083,642	+				-2.9
1,083,648	+				-2.0
1,083,714	-				-3.3
1,083,793	+				-2.2
1,083,793	+				-4.0
1,084,022	+		HMPREF1058_RS08645	0.25	-1.5
1,084,069	-		HMPREF1058_RS08645	0.29	-4.2
1,084,069	-		HMPREF1058_RS08645	0.29	-4.1
1,084,119	+		HMPREF1058_RS08645	0.33	-2.2
1,084,119	+		HMPREF1058_RS08645	0.33	-2.8
1,084,120	-		HMPREF1058_RS08645	0.33	-3.7
1,084,120	-		HMPREF1058_RS08645	0.33	-3.0
1,084,183	-		HMPREF1058_RS08645	0.38	-3.4
1,084,316	+		HMPREF1058_RS08645	0.49	-3.6
1,084,316	+		HMPREF1058_RS08645	0.49	-3.6
1,084,316	+		HMPREF1058_RS08645	0.49	-3.4
1,084,322	-		HMPREF1058_RS08645	0.49	-2.9
1,084,481	+		HMPREF1058_RS08645	0.62	-3.2
1,084,482	-		HMPREF1058_RS08645	0.62	-3.2
1,084,550	-		HMPREF1058_RS08645	0.68	-4.7
1,084,569	+		HMPREF1058_RS08645	0.69	-2.2
1,084,570	-		HMPREF1058_RS08645	0.69	+0.5
1,084,574	-		HMPREF1058_RS08645	0.69	-3.0
1,084,617	+		HMPREF1058_RS08645	0.73	-1.9