Experiment: D-Raffinose 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07415 and HMPREF1058_RS07410 are separated by 1 nucleotides HMPREF1058_RS07410 and HMPREF1058_RS07405 overlap by 4 nucleotides HMPREF1058_RS07405 and HMPREF1058_RS07400 are separated by 26 nucleotides
HMPREF1058_RS07415: HMPREF1058_RS07415 - family 20 glycosylhydrolase, at 232,765 to 234,771
_RS07415
HMPREF1058_RS07410: HMPREF1058_RS07410 - sialate O-acetylesterase, at 234,773 to 235,438
_RS07410
HMPREF1058_RS07405: HMPREF1058_RS07405 - sialate O-acetylesterase, at 235,435 to 237,498
_RS07405
HMPREF1058_RS07400: HMPREF1058_RS07400 - glycoside hydrolase family 2 protein, at 237,525 to 240,092
_RS07400
Position (kb) 235
236
237
238 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 234.466 kb on - strand, within HMPREF1058_RS07415 at 234.476 kb on - strand, within HMPREF1058_RS07415 at 234.477 kb on + strand, within HMPREF1058_RS07415 at 234.489 kb on + strand, within HMPREF1058_RS07415 at 234.615 kb on + strand at 234.697 kb on - strand at 234.748 kb on + strand at 234.782 kb on - strand at 234.789 kb on + strand at 234.790 kb on - strand at 234.843 kb on - strand, within HMPREF1058_RS07410 at 234.848 kb on - strand, within HMPREF1058_RS07410 at 235.011 kb on + strand, within HMPREF1058_RS07410 at 235.013 kb on + strand, within HMPREF1058_RS07410 at 235.126 kb on + strand, within HMPREF1058_RS07410 at 235.226 kb on - strand, within HMPREF1058_RS07410 at 235.226 kb on - strand, within HMPREF1058_RS07410 at 235.355 kb on + strand, within HMPREF1058_RS07410 at 235.356 kb on - strand, within HMPREF1058_RS07410 at 235.356 kb on - strand, within HMPREF1058_RS07410 at 235.524 kb on + strand at 235.531 kb on - strand at 235.541 kb on + strand at 235.542 kb on - strand at 235.542 kb on - strand at 235.542 kb on - strand at 235.542 kb on - strand at 235.639 kb on - strand at 235.668 kb on + strand, within HMPREF1058_RS07405 at 235.715 kb on + strand, within HMPREF1058_RS07405 at 235.932 kb on - strand, within HMPREF1058_RS07405 at 235.949 kb on - strand, within HMPREF1058_RS07405 at 235.986 kb on - strand, within HMPREF1058_RS07405 at 235.986 kb on - strand, within HMPREF1058_RS07405 at 235.986 kb on - strand, within HMPREF1058_RS07405 at 236.063 kb on - strand, within HMPREF1058_RS07405 at 236.183 kb on + strand, within HMPREF1058_RS07405 at 236.281 kb on - strand, within HMPREF1058_RS07405 at 236.428 kb on - strand, within HMPREF1058_RS07405 at 236.443 kb on + strand, within HMPREF1058_RS07405 at 236.522 kb on - strand, within HMPREF1058_RS07405 at 236.525 kb on - strand, within HMPREF1058_RS07405 at 236.527 kb on - strand, within HMPREF1058_RS07405 at 236.527 kb on - strand, within HMPREF1058_RS07405 at 236.613 kb on + strand, within HMPREF1058_RS07405 at 236.678 kb on + strand, within HMPREF1058_RS07405 at 236.718 kb on - strand, within HMPREF1058_RS07405 at 236.743 kb on - strand, within HMPREF1058_RS07405 at 236.780 kb on + strand, within HMPREF1058_RS07405 at 236.780 kb on + strand, within HMPREF1058_RS07405 at 236.781 kb on - strand, within HMPREF1058_RS07405 at 236.828 kb on - strand, within HMPREF1058_RS07405 at 236.880 kb on + strand, within HMPREF1058_RS07405 at 236.902 kb on - strand, within HMPREF1058_RS07405 at 237.014 kb on + strand, within HMPREF1058_RS07405 at 237.015 kb on - strand, within HMPREF1058_RS07405 at 237.233 kb on + strand, within HMPREF1058_RS07405 at 237.254 kb on - strand, within HMPREF1058_RS07405 at 237.256 kb on - strand, within HMPREF1058_RS07405 at 237.310 kb on - strand at 237.312 kb on - strand at 237.339 kb on - strand at 237.384 kb on - strand at 237.508 kb on + strand at 237.512 kb on - strand at 237.517 kb on + strand at 237.521 kb on + strand at 237.522 kb on - strand at 237.591 kb on + strand at 237.710 kb on + strand at 237.730 kb on - strand at 237.782 kb on + strand, within HMPREF1058_RS07400 at 237.783 kb on - strand, within HMPREF1058_RS07400 at 237.794 kb on + strand, within HMPREF1058_RS07400 at 237.859 kb on - strand, within HMPREF1058_RS07400 at 238.000 kb on + strand, within HMPREF1058_RS07400 at 238.067 kb on + strand, within HMPREF1058_RS07400 at 238.067 kb on + strand, within HMPREF1058_RS07400 at 238.068 kb on - strand, within HMPREF1058_RS07400 at 238.071 kb on + strand, within HMPREF1058_RS07400 at 238.188 kb on + strand, within HMPREF1058_RS07400 at 238.189 kb on - strand at 238.189 kb on - strand, within HMPREF1058_RS07400 at 238.192 kb on + strand, within HMPREF1058_RS07400 at 238.294 kb on - strand, within HMPREF1058_RS07400 at 238.302 kb on - strand, within HMPREF1058_RS07400 at 238.302 kb on - strand, within HMPREF1058_RS07400 at 238.381 kb on + strand, within HMPREF1058_RS07400 at 238.407 kb on - strand, within HMPREF1058_RS07400 at 238.407 kb on - strand, within HMPREF1058_RS07400 at 238.472 kb on - strand, within HMPREF1058_RS07400
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose 2.5 mg/ml (C) remove 234,466 - HMPREF1058_RS07415 0.85 -1.2 234,476 - HMPREF1058_RS07415 0.85 -0.4 234,477 + HMPREF1058_RS07415 0.85 -0.1 234,489 + HMPREF1058_RS07415 0.86 +0.0 234,615 + -1.8 234,697 - -0.4 234,748 + +0.3 234,782 - -0.4 234,789 + +3.2 234,790 - +0.1 234,843 - HMPREF1058_RS07410 0.11 -0.7 234,848 - HMPREF1058_RS07410 0.11 -0.3 235,011 + HMPREF1058_RS07410 0.36 -0.6 235,013 + HMPREF1058_RS07410 0.36 +0.4 235,126 + HMPREF1058_RS07410 0.53 -0.0 235,226 - HMPREF1058_RS07410 0.68 +0.0 235,226 - HMPREF1058_RS07410 0.68 +0.2 235,355 + HMPREF1058_RS07410 0.87 -0.3 235,356 - HMPREF1058_RS07410 0.88 +1.4 235,356 - HMPREF1058_RS07410 0.88 -0.6 235,524 + +0.5 235,531 - +0.2 235,541 + +0.4 235,542 - -0.5 235,542 - +0.3 235,542 - +0.1 235,542 - +1.2 235,639 - +0.1 235,668 + HMPREF1058_RS07405 0.11 +0.2 235,715 + HMPREF1058_RS07405 0.14 -0.0 235,932 - HMPREF1058_RS07405 0.24 -1.5 235,949 - HMPREF1058_RS07405 0.25 -0.3 235,986 - HMPREF1058_RS07405 0.27 +0.4 235,986 - HMPREF1058_RS07405 0.27 +0.1 235,986 - HMPREF1058_RS07405 0.27 -1.1 236,063 - HMPREF1058_RS07405 0.30 -0.0 236,183 + HMPREF1058_RS07405 0.36 +0.3 236,281 - HMPREF1058_RS07405 0.41 +0.1 236,428 - HMPREF1058_RS07405 0.48 -0.4 236,443 + HMPREF1058_RS07405 0.49 +0.5 236,522 - HMPREF1058_RS07405 0.53 -0.5 236,525 - HMPREF1058_RS07405 0.53 -0.0 236,527 - HMPREF1058_RS07405 0.53 +1.5 236,527 - HMPREF1058_RS07405 0.53 +0.4 236,613 + HMPREF1058_RS07405 0.57 -0.5 236,678 + HMPREF1058_RS07405 0.60 -0.1 236,718 - HMPREF1058_RS07405 0.62 -0.5 236,743 - HMPREF1058_RS07405 0.63 -0.5 236,780 + HMPREF1058_RS07405 0.65 +0.9 236,780 + HMPREF1058_RS07405 0.65 -1.3 236,781 - HMPREF1058_RS07405 0.65 -0.0 236,828 - HMPREF1058_RS07405 0.67 -0.1 236,880 + HMPREF1058_RS07405 0.70 -0.6 236,902 - HMPREF1058_RS07405 0.71 -1.8 237,014 + HMPREF1058_RS07405 0.77 -0.8 237,015 - HMPREF1058_RS07405 0.77 -0.5 237,233 + HMPREF1058_RS07405 0.87 -0.6 237,254 - HMPREF1058_RS07405 0.88 -1.4 237,256 - HMPREF1058_RS07405 0.88 -0.1 237,310 - +1.4 237,312 - +0.1 237,339 - -0.8 237,384 - -0.1 237,508 + -1.0 237,512 - -1.0 237,517 + -0.7 237,521 + -0.6 237,522 - +0.4 237,591 + +0.2 237,710 + -1.4 237,730 - +1.2 237,782 + HMPREF1058_RS07400 0.10 +0.6 237,783 - HMPREF1058_RS07400 0.10 +0.6 237,794 + HMPREF1058_RS07400 0.10 +1.2 237,859 - HMPREF1058_RS07400 0.13 +0.4 238,000 + HMPREF1058_RS07400 0.18 -0.9 238,067 + HMPREF1058_RS07400 0.21 +0.1 238,067 + HMPREF1058_RS07400 0.21 -1.3 238,068 - HMPREF1058_RS07400 0.21 -0.6 238,071 + HMPREF1058_RS07400 0.21 -1.4 238,188 + HMPREF1058_RS07400 0.26 -0.9 238,189 - -1.1 238,189 - HMPREF1058_RS07400 0.26 -0.7 238,192 + HMPREF1058_RS07400 0.26 -0.2 238,294 - HMPREF1058_RS07400 0.30 -1.6 238,302 - HMPREF1058_RS07400 0.30 +0.4 238,302 - HMPREF1058_RS07400 0.30 +0.1 238,381 + HMPREF1058_RS07400 0.33 -0.3 238,407 - HMPREF1058_RS07400 0.34 -0.3 238,407 - HMPREF1058_RS07400 0.34 -0.3 238,472 - HMPREF1058_RS07400 0.37 +0.3
Or see this region's nucleotide sequence