Experiment: D-Glucose 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06460 and HMPREF1058_RS06455 are separated by 351 nucleotides HMPREF1058_RS06455 and HMPREF1058_RS06450 are separated by 223 nucleotides HMPREF1058_RS06450 and HMPREF1058_RS06445 are separated by 31 nucleotides
HMPREF1058_RS06460: HMPREF1058_RS06460 - hypothetical protein, at 473,895 to 474,383
_RS06460
HMPREF1058_RS06455: HMPREF1058_RS06455 - DUF4248 domain-containing protein, at 474,735 to 474,953
_RS06455
HMPREF1058_RS06450: HMPREF1058_RS06450 - hypothetical protein, at 475,177 to 476,253
_RS06450
HMPREF1058_RS06445: HMPREF1058_RS06445 - hypothetical protein, at 476,285 to 478,360
_RS06445
Position (kb) 475
476
477 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 474.373 kb on + strand at 474.373 kb on + strand at 474.374 kb on - strand at 474.512 kb on - strand at 474.547 kb on + strand at 474.592 kb on + strand at 474.726 kb on - strand at 474.751 kb on + strand at 474.787 kb on - strand, within HMPREF1058_RS06455 at 474.903 kb on + strand, within HMPREF1058_RS06455 at 474.903 kb on + strand, within HMPREF1058_RS06455 at 474.904 kb on - strand, within HMPREF1058_RS06455 at 474.904 kb on - strand, within HMPREF1058_RS06455 at 475.074 kb on + strand at 475.075 kb on - strand at 475.076 kb on + strand at 475.116 kb on - strand at 475.117 kb on + strand at 475.118 kb on - strand at 475.186 kb on + strand at 475.352 kb on + strand, within HMPREF1058_RS06450 at 475.352 kb on + strand, within HMPREF1058_RS06450 at 475.353 kb on - strand, within HMPREF1058_RS06450 at 475.354 kb on + strand, within HMPREF1058_RS06450 at 475.670 kb on + strand, within HMPREF1058_RS06450 at 475.771 kb on + strand, within HMPREF1058_RS06450 at 475.771 kb on + strand, within HMPREF1058_RS06450 at 475.838 kb on + strand, within HMPREF1058_RS06450 at 475.945 kb on + strand, within HMPREF1058_RS06450 at 475.947 kb on + strand, within HMPREF1058_RS06450 at 476.113 kb on - strand, within HMPREF1058_RS06450 at 476.238 kb on - strand at 476.238 kb on - strand at 476.238 kb on - strand at 476.262 kb on + strand at 476.268 kb on - strand at 476.268 kb on - strand at 476.270 kb on + strand at 476.270 kb on + strand at 476.271 kb on - strand at 476.271 kb on - strand at 476.274 kb on + strand at 476.274 kb on + strand at 476.275 kb on - strand at 476.279 kb on - strand at 476.281 kb on - strand at 476.281 kb on - strand at 476.287 kb on - strand at 476.529 kb on + strand, within HMPREF1058_RS06445 at 476.594 kb on + strand, within HMPREF1058_RS06445 at 476.691 kb on - strand, within HMPREF1058_RS06445 at 476.694 kb on + strand, within HMPREF1058_RS06445 at 476.698 kb on + strand, within HMPREF1058_RS06445 at 476.721 kb on - strand, within HMPREF1058_RS06445 at 476.805 kb on - strand, within HMPREF1058_RS06445 at 476.843 kb on + strand, within HMPREF1058_RS06445 at 476.843 kb on + strand, within HMPREF1058_RS06445 at 476.911 kb on - strand, within HMPREF1058_RS06445 at 476.911 kb on - strand, within HMPREF1058_RS06445 at 477.094 kb on - strand, within HMPREF1058_RS06445 at 477.095 kb on + strand, within HMPREF1058_RS06445 at 477.095 kb on + strand, within HMPREF1058_RS06445 at 477.095 kb on + strand, within HMPREF1058_RS06445 at 477.095 kb on + strand, within HMPREF1058_RS06445 at 477.096 kb on - strand, within HMPREF1058_RS06445
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 2.5 mg/ml (C) remove 474,373 + +0.0 474,373 + +0.4 474,374 - -1.1 474,512 - +0.2 474,547 + -0.5 474,592 + +0.1 474,726 - -1.6 474,751 + +1.2 474,787 - HMPREF1058_RS06455 0.24 -1.1 474,903 + HMPREF1058_RS06455 0.77 -0.6 474,903 + HMPREF1058_RS06455 0.77 -0.5 474,904 - HMPREF1058_RS06455 0.77 -0.5 474,904 - HMPREF1058_RS06455 0.77 -0.8 475,074 + -1.2 475,075 - +0.1 475,076 + +1.4 475,116 - -0.5 475,117 + -1.6 475,118 - +0.2 475,186 + -0.9 475,352 + HMPREF1058_RS06450 0.16 -1.6 475,352 + HMPREF1058_RS06450 0.16 -0.4 475,353 - HMPREF1058_RS06450 0.16 -0.2 475,354 + HMPREF1058_RS06450 0.16 +0.4 475,670 + HMPREF1058_RS06450 0.46 -1.6 475,771 + HMPREF1058_RS06450 0.55 -1.3 475,771 + HMPREF1058_RS06450 0.55 -0.7 475,838 + HMPREF1058_RS06450 0.61 -0.9 475,945 + HMPREF1058_RS06450 0.71 +0.0 475,947 + HMPREF1058_RS06450 0.71 -1.3 476,113 - HMPREF1058_RS06450 0.87 -0.1 476,238 - +0.4 476,238 - +3.0 476,238 - -1.6 476,262 + -0.3 476,268 - +0.1 476,268 - -0.4 476,270 + -0.3 476,270 + +0.7 476,271 - -1.0 476,271 - -0.7 476,274 + -0.1 476,274 + -0.7 476,275 - +0.2 476,279 - -0.6 476,281 - -0.8 476,281 - -0.2 476,287 - -2.7 476,529 + HMPREF1058_RS06445 0.12 -0.8 476,594 + HMPREF1058_RS06445 0.15 -0.2 476,691 - HMPREF1058_RS06445 0.20 -0.4 476,694 + HMPREF1058_RS06445 0.20 +0.1 476,698 + HMPREF1058_RS06445 0.20 -0.3 476,721 - HMPREF1058_RS06445 0.21 -0.6 476,805 - HMPREF1058_RS06445 0.25 +0.3 476,843 + HMPREF1058_RS06445 0.27 -1.0 476,843 + HMPREF1058_RS06445 0.27 -0.3 476,911 - HMPREF1058_RS06445 0.30 -0.1 476,911 - HMPREF1058_RS06445 0.30 +0.6 477,094 - HMPREF1058_RS06445 0.39 -0.4 477,095 + HMPREF1058_RS06445 0.39 +0.2 477,095 + HMPREF1058_RS06445 0.39 +0.4 477,095 + HMPREF1058_RS06445 0.39 -0.8 477,095 + HMPREF1058_RS06445 0.39 -1.4 477,096 - HMPREF1058_RS06445 0.39 -0.6
Or see this region's nucleotide sequence