Experiment: D-Galactose 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15860 and HMPREF1058_RS15855 are separated by 105 nucleotides HMPREF1058_RS15855 and HMPREF1058_RS15850 overlap by 4 nucleotides HMPREF1058_RS15850 and HMPREF1058_RS15845 are separated by 12 nucleotides HMPREF1058_RS15845 and HMPREF1058_RS15840 overlap by 4 nucleotides
HMPREF1058_RS15860: HMPREF1058_RS15860 - Dabb family protein, at 818,902 to 819,201
_RS15860
HMPREF1058_RS15855: HMPREF1058_RS15855 - uridine kinase, at 819,307 to 819,918
_RS15855
HMPREF1058_RS15850: HMPREF1058_RS15850 - transglycosylase SLT domain-containing protein, at 819,915 to 821,294
_RS15850
HMPREF1058_RS15845: HMPREF1058_RS15845 - YjbH domain-containing protein, at 821,307 to 822,119
_RS15845
HMPREF1058_RS15840: HMPREF1058_RS15840 - glycosyltransferase family 4 protein, at 822,116 to 823,204
_RS15840
Position (kb) 819
820
821
822 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 819.074 kb on - strand, within HMPREF1058_RS15860 at 819.074 kb on - strand, within HMPREF1058_RS15860 at 819.084 kb on + strand, within HMPREF1058_RS15860 at 819.091 kb on + strand, within HMPREF1058_RS15860 at 819.124 kb on - strand, within HMPREF1058_RS15860 at 819.258 kb on + strand at 819.300 kb on + strand at 819.300 kb on + strand at 819.300 kb on + strand at 819.301 kb on - strand at 819.307 kb on - strand at 819.312 kb on - strand at 819.357 kb on - strand at 819.418 kb on + strand, within HMPREF1058_RS15855 at 819.419 kb on - strand, within HMPREF1058_RS15855 at 819.421 kb on + strand, within HMPREF1058_RS15855 at 819.421 kb on + strand, within HMPREF1058_RS15855 at 819.422 kb on - strand, within HMPREF1058_RS15855 at 819.424 kb on - strand, within HMPREF1058_RS15855 at 819.456 kb on + strand, within HMPREF1058_RS15855 at 819.562 kb on + strand, within HMPREF1058_RS15855 at 819.563 kb on - strand, within HMPREF1058_RS15855 at 819.566 kb on + strand, within HMPREF1058_RS15855 at 819.566 kb on + strand, within HMPREF1058_RS15855 at 819.569 kb on + strand, within HMPREF1058_RS15855 at 819.573 kb on + strand, within HMPREF1058_RS15855 at 819.643 kb on + strand, within HMPREF1058_RS15855 at 819.819 kb on + strand, within HMPREF1058_RS15855 at 819.819 kb on + strand, within HMPREF1058_RS15855 at 819.841 kb on - strand, within HMPREF1058_RS15855 at 819.841 kb on - strand, within HMPREF1058_RS15855 at 819.844 kb on - strand, within HMPREF1058_RS15855 at 819.890 kb on + strand at 819.950 kb on - strand at 820.016 kb on - strand at 820.218 kb on + strand, within HMPREF1058_RS15850 at 820.275 kb on - strand, within HMPREF1058_RS15850 at 820.349 kb on - strand, within HMPREF1058_RS15850 at 820.365 kb on + strand, within HMPREF1058_RS15850 at 820.370 kb on - strand, within HMPREF1058_RS15850 at 820.383 kb on + strand, within HMPREF1058_RS15850 at 820.409 kb on + strand, within HMPREF1058_RS15850 at 820.427 kb on + strand, within HMPREF1058_RS15850 at 820.548 kb on + strand, within HMPREF1058_RS15850 at 820.548 kb on + strand, within HMPREF1058_RS15850 at 820.610 kb on - strand, within HMPREF1058_RS15850 at 820.613 kb on + strand, within HMPREF1058_RS15850 at 820.646 kb on + strand, within HMPREF1058_RS15850 at 820.647 kb on - strand, within HMPREF1058_RS15850 at 820.781 kb on - strand, within HMPREF1058_RS15850 at 820.791 kb on + strand, within HMPREF1058_RS15850 at 820.967 kb on + strand, within HMPREF1058_RS15850 at 820.967 kb on + strand, within HMPREF1058_RS15850 at 820.968 kb on - strand, within HMPREF1058_RS15850 at 820.969 kb on + strand, within HMPREF1058_RS15850 at 820.987 kb on - strand, within HMPREF1058_RS15850 at 820.987 kb on - strand, within HMPREF1058_RS15850 at 821.075 kb on - strand, within HMPREF1058_RS15850 at 821.084 kb on - strand, within HMPREF1058_RS15850 at 821.112 kb on + strand, within HMPREF1058_RS15850 at 821.124 kb on - strand, within HMPREF1058_RS15850 at 821.127 kb on + strand, within HMPREF1058_RS15850 at 821.127 kb on + strand, within HMPREF1058_RS15850 at 821.128 kb on - strand, within HMPREF1058_RS15850 at 821.128 kb on - strand, within HMPREF1058_RS15850 at 821.131 kb on + strand, within HMPREF1058_RS15850 at 821.150 kb on + strand, within HMPREF1058_RS15850 at 821.151 kb on - strand, within HMPREF1058_RS15850 at 821.155 kb on - strand, within HMPREF1058_RS15850 at 821.156 kb on + strand, within HMPREF1058_RS15850 at 821.156 kb on + strand, within HMPREF1058_RS15850 at 821.156 kb on + strand, within HMPREF1058_RS15850 at 821.385 kb on - strand at 821.405 kb on - strand, within HMPREF1058_RS15845 at 821.415 kb on + strand, within HMPREF1058_RS15845 at 821.415 kb on + strand, within HMPREF1058_RS15845 at 821.415 kb on + strand, within HMPREF1058_RS15845 at 821.415 kb on + strand, within HMPREF1058_RS15845 at 821.416 kb on - strand, within HMPREF1058_RS15845 at 821.416 kb on - strand, within HMPREF1058_RS15845 at 821.416 kb on - strand, within HMPREF1058_RS15845 at 821.417 kb on + strand, within HMPREF1058_RS15845 at 821.437 kb on + strand, within HMPREF1058_RS15845 at 821.510 kb on + strand, within HMPREF1058_RS15845 at 821.517 kb on + strand, within HMPREF1058_RS15845 at 821.518 kb on - strand, within HMPREF1058_RS15845 at 821.540 kb on - strand, within HMPREF1058_RS15845 at 821.557 kb on + strand, within HMPREF1058_RS15845 at 821.557 kb on + strand, within HMPREF1058_RS15845 at 821.563 kb on + strand, within HMPREF1058_RS15845 at 821.563 kb on + strand, within HMPREF1058_RS15845 at 821.564 kb on - strand, within HMPREF1058_RS15845 at 821.581 kb on - strand, within HMPREF1058_RS15845 at 821.591 kb on + strand, within HMPREF1058_RS15845 at 821.592 kb on - strand, within HMPREF1058_RS15845 at 821.600 kb on + strand, within HMPREF1058_RS15845 at 821.615 kb on + strand at 821.661 kb on - strand, within HMPREF1058_RS15845 at 821.669 kb on + strand, within HMPREF1058_RS15845 at 821.675 kb on + strand, within HMPREF1058_RS15845 at 821.840 kb on - strand, within HMPREF1058_RS15845 at 821.877 kb on - strand, within HMPREF1058_RS15845 at 821.877 kb on - strand, within HMPREF1058_RS15845 at 821.878 kb on + strand, within HMPREF1058_RS15845 at 821.909 kb on + strand, within HMPREF1058_RS15845 at 821.920 kb on + strand, within HMPREF1058_RS15845 at 821.925 kb on - strand, within HMPREF1058_RS15845 at 821.935 kb on + strand, within HMPREF1058_RS15845 at 822.158 kb on + strand at 822.174 kb on + strand at 822.174 kb on + strand at 822.195 kb on - strand at 822.248 kb on + strand, within HMPREF1058_RS15840 at 822.249 kb on - strand, within HMPREF1058_RS15840
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 2.5 mg/ml (C) remove 819,074 - HMPREF1058_RS15860 0.57 -1.0 819,074 - HMPREF1058_RS15860 0.57 +0.5 819,084 + HMPREF1058_RS15860 0.61 -0.3 819,091 + HMPREF1058_RS15860 0.63 -0.5 819,124 - HMPREF1058_RS15860 0.74 +0.5 819,258 + -1.4 819,300 + -0.3 819,300 + -0.7 819,300 + -0.7 819,301 - -1.8 819,307 - -1.3 819,312 - -1.4 819,357 - -0.5 819,418 + HMPREF1058_RS15855 0.18 -1.2 819,419 - HMPREF1058_RS15855 0.18 -2.3 819,421 + HMPREF1058_RS15855 0.19 -0.7 819,421 + HMPREF1058_RS15855 0.19 +0.6 819,422 - HMPREF1058_RS15855 0.19 -1.8 819,424 - HMPREF1058_RS15855 0.19 -1.2 819,456 + HMPREF1058_RS15855 0.24 -1.4 819,562 + HMPREF1058_RS15855 0.42 -0.2 819,563 - HMPREF1058_RS15855 0.42 -1.5 819,566 + HMPREF1058_RS15855 0.42 -1.0 819,566 + HMPREF1058_RS15855 0.42 -1.4 819,569 + HMPREF1058_RS15855 0.43 -0.8 819,573 + HMPREF1058_RS15855 0.43 -2.2 819,643 + HMPREF1058_RS15855 0.55 -0.7 819,819 + HMPREF1058_RS15855 0.84 -0.6 819,819 + HMPREF1058_RS15855 0.84 -1.2 819,841 - HMPREF1058_RS15855 0.87 -0.7 819,841 - HMPREF1058_RS15855 0.87 -0.6 819,844 - HMPREF1058_RS15855 0.88 -3.9 819,890 + -1.5 819,950 - -0.4 820,016 - +0.1 820,218 + HMPREF1058_RS15850 0.22 -0.3 820,275 - HMPREF1058_RS15850 0.26 -1.6 820,349 - HMPREF1058_RS15850 0.31 -1.7 820,365 + HMPREF1058_RS15850 0.33 -2.3 820,370 - HMPREF1058_RS15850 0.33 -0.2 820,383 + HMPREF1058_RS15850 0.34 -0.3 820,409 + HMPREF1058_RS15850 0.36 -0.4 820,427 + HMPREF1058_RS15850 0.37 -1.7 820,548 + HMPREF1058_RS15850 0.46 -1.2 820,548 + HMPREF1058_RS15850 0.46 -0.6 820,610 - HMPREF1058_RS15850 0.50 -0.6 820,613 + HMPREF1058_RS15850 0.51 -0.5 820,646 + HMPREF1058_RS15850 0.53 -0.3 820,647 - HMPREF1058_RS15850 0.53 -0.8 820,781 - HMPREF1058_RS15850 0.63 +0.5 820,791 + HMPREF1058_RS15850 0.63 -1.2 820,967 + HMPREF1058_RS15850 0.76 +0.6 820,967 + HMPREF1058_RS15850 0.76 -0.9 820,968 - HMPREF1058_RS15850 0.76 -0.7 820,969 + HMPREF1058_RS15850 0.76 +0.0 820,987 - HMPREF1058_RS15850 0.78 -2.1 820,987 - HMPREF1058_RS15850 0.78 -0.9 821,075 - HMPREF1058_RS15850 0.84 -3.5 821,084 - HMPREF1058_RS15850 0.85 -0.5 821,112 + HMPREF1058_RS15850 0.87 -1.7 821,124 - HMPREF1058_RS15850 0.88 -1.2 821,127 + HMPREF1058_RS15850 0.88 -0.8 821,127 + HMPREF1058_RS15850 0.88 -1.1 821,128 - HMPREF1058_RS15850 0.88 +0.4 821,128 - HMPREF1058_RS15850 0.88 -1.0 821,131 + HMPREF1058_RS15850 0.88 -0.8 821,150 + HMPREF1058_RS15850 0.89 -1.3 821,151 - HMPREF1058_RS15850 0.90 -1.4 821,155 - HMPREF1058_RS15850 0.90 -0.3 821,156 + HMPREF1058_RS15850 0.90 +0.1 821,156 + HMPREF1058_RS15850 0.90 -1.4 821,156 + HMPREF1058_RS15850 0.90 -0.6 821,385 - -2.8 821,405 - HMPREF1058_RS15845 0.12 +0.5 821,415 + HMPREF1058_RS15845 0.13 -0.6 821,415 + HMPREF1058_RS15845 0.13 +0.6 821,415 + HMPREF1058_RS15845 0.13 +0.4 821,415 + HMPREF1058_RS15845 0.13 +0.1 821,416 - HMPREF1058_RS15845 0.13 -0.2 821,416 - HMPREF1058_RS15845 0.13 -2.5 821,416 - HMPREF1058_RS15845 0.13 -0.3 821,417 + HMPREF1058_RS15845 0.14 +0.1 821,437 + HMPREF1058_RS15845 0.16 +0.2 821,510 + HMPREF1058_RS15845 0.25 +0.9 821,517 + HMPREF1058_RS15845 0.26 +0.0 821,518 - HMPREF1058_RS15845 0.26 -0.3 821,540 - HMPREF1058_RS15845 0.29 -0.7 821,557 + HMPREF1058_RS15845 0.31 -2.1 821,557 + HMPREF1058_RS15845 0.31 -1.2 821,563 + HMPREF1058_RS15845 0.31 -0.4 821,563 + HMPREF1058_RS15845 0.31 -2.0 821,564 - HMPREF1058_RS15845 0.32 +0.6 821,581 - HMPREF1058_RS15845 0.34 -1.0 821,591 + HMPREF1058_RS15845 0.35 +0.3 821,592 - HMPREF1058_RS15845 0.35 +0.8 821,600 + HMPREF1058_RS15845 0.36 -0.3 821,615 + +0.9 821,661 - HMPREF1058_RS15845 0.44 +0.0 821,669 + HMPREF1058_RS15845 0.45 -0.1 821,675 + HMPREF1058_RS15845 0.45 +0.3 821,840 - HMPREF1058_RS15845 0.66 -0.3 821,877 - HMPREF1058_RS15845 0.70 +0.6 821,877 - HMPREF1058_RS15845 0.70 -0.4 821,878 + HMPREF1058_RS15845 0.70 -0.6 821,909 + HMPREF1058_RS15845 0.74 -2.2 821,920 + HMPREF1058_RS15845 0.75 -0.4 821,925 - HMPREF1058_RS15845 0.76 +0.4 821,935 + HMPREF1058_RS15845 0.77 +0.3 822,158 + -0.5 822,174 + +0.8 822,174 + -1.2 822,195 - -1.4 822,248 + HMPREF1058_RS15840 0.12 -0.0 822,249 - HMPREF1058_RS15840 0.12 -0.3
Or see this region's nucleotide sequence