Experiment: D-Galactose 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00260 and HMPREF1058_RS00255 are separated by 62 nucleotides HMPREF1058_RS00255 and HMPREF1058_RS00250 are separated by 10 nucleotides
HMPREF1058_RS00260: HMPREF1058_RS00260 - xylosidase, at 19,924 to 22,122
_RS00260
HMPREF1058_RS00255: HMPREF1058_RS00255 - transposase family protein, at 22,185 to 22,535
_RS00255
HMPREF1058_RS00250: HMPREF1058_RS00250 - transposase, at 22,546 to 23,550
_RS00250
Position (kb) 22
23 Strain fitness (log2 ratio) -1
0
1
2 at 21.335 kb on + strand, within HMPREF1058_RS00260 at 21.335 kb on + strand, within HMPREF1058_RS00260 at 21.336 kb on - strand, within HMPREF1058_RS00260 at 21.350 kb on + strand, within HMPREF1058_RS00260 at 21.367 kb on - strand, within HMPREF1058_RS00260 at 21.460 kb on + strand, within HMPREF1058_RS00260 at 21.460 kb on + strand, within HMPREF1058_RS00260 at 21.469 kb on - strand, within HMPREF1058_RS00260 at 21.469 kb on - strand, within HMPREF1058_RS00260 at 21.502 kb on - strand, within HMPREF1058_RS00260 at 21.502 kb on - strand, within HMPREF1058_RS00260 at 21.518 kb on - strand, within HMPREF1058_RS00260 at 21.518 kb on - strand, within HMPREF1058_RS00260 at 21.542 kb on + strand, within HMPREF1058_RS00260 at 21.562 kb on - strand, within HMPREF1058_RS00260 at 21.604 kb on - strand, within HMPREF1058_RS00260 at 21.604 kb on - strand, within HMPREF1058_RS00260 at 21.622 kb on + strand, within HMPREF1058_RS00260 at 21.623 kb on - strand, within HMPREF1058_RS00260 at 21.642 kb on + strand, within HMPREF1058_RS00260 at 21.670 kb on + strand, within HMPREF1058_RS00260 at 21.671 kb on - strand, within HMPREF1058_RS00260 at 21.671 kb on - strand, within HMPREF1058_RS00260 at 21.672 kb on + strand, within HMPREF1058_RS00260 at 21.677 kb on - strand, within HMPREF1058_RS00260 at 21.681 kb on + strand, within HMPREF1058_RS00260 at 21.705 kb on + strand, within HMPREF1058_RS00260 at 21.754 kb on - strand, within HMPREF1058_RS00260 at 21.778 kb on + strand, within HMPREF1058_RS00260 at 21.778 kb on + strand, within HMPREF1058_RS00260 at 21.779 kb on - strand, within HMPREF1058_RS00260 at 21.816 kb on - strand, within HMPREF1058_RS00260 at 21.827 kb on - strand, within HMPREF1058_RS00260 at 22.052 kb on + strand at 22.052 kb on + strand at 22.052 kb on + strand at 22.053 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 2.5 mg/ml (C) remove 21,335 + HMPREF1058_RS00260 0.64 -1.2 21,335 + HMPREF1058_RS00260 0.64 -0.1 21,336 - HMPREF1058_RS00260 0.64 +0.6 21,350 + HMPREF1058_RS00260 0.65 +0.9 21,367 - HMPREF1058_RS00260 0.66 +0.2 21,460 + HMPREF1058_RS00260 0.70 +0.3 21,460 + HMPREF1058_RS00260 0.70 +1.3 21,469 - HMPREF1058_RS00260 0.70 +0.5 21,469 - HMPREF1058_RS00260 0.70 -0.4 21,502 - HMPREF1058_RS00260 0.72 +0.1 21,502 - HMPREF1058_RS00260 0.72 -0.0 21,518 - HMPREF1058_RS00260 0.72 -0.1 21,518 - HMPREF1058_RS00260 0.72 +0.2 21,542 + HMPREF1058_RS00260 0.74 +0.3 21,562 - HMPREF1058_RS00260 0.74 -0.1 21,604 - HMPREF1058_RS00260 0.76 -0.1 21,604 - HMPREF1058_RS00260 0.76 -0.5 21,622 + HMPREF1058_RS00260 0.77 +0.2 21,623 - HMPREF1058_RS00260 0.77 -1.1 21,642 + HMPREF1058_RS00260 0.78 -1.5 21,670 + HMPREF1058_RS00260 0.79 +0.3 21,671 - HMPREF1058_RS00260 0.79 -1.5 21,671 - HMPREF1058_RS00260 0.79 -0.3 21,672 + HMPREF1058_RS00260 0.79 -0.4 21,677 - HMPREF1058_RS00260 0.80 +0.7 21,681 + HMPREF1058_RS00260 0.80 -1.7 21,705 + HMPREF1058_RS00260 0.81 +1.3 21,754 - HMPREF1058_RS00260 0.83 -0.7 21,778 + HMPREF1058_RS00260 0.84 -0.5 21,778 + HMPREF1058_RS00260 0.84 -0.7 21,779 - HMPREF1058_RS00260 0.84 +0.7 21,816 - HMPREF1058_RS00260 0.86 +1.0 21,827 - HMPREF1058_RS00260 0.87 -1.0 22,052 + +2.3 22,052 + +0.2 22,052 + +0.5 22,053 - -0.3
Or see this region's nucleotide sequence