Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08780

Experiment: D-Galactose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Galactose 2.5 mg/ml (C)
1,035,765	+		HMPREF1058_RS08785	0.32	-1.4
1,035,790	+		HMPREF1058_RS08785	0.34	+0.2
1,035,836	-		HMPREF1058_RS08785	0.37	-0.2
1,036,042	+		HMPREF1058_RS08785	0.52	+0.3
1,036,042	+		HMPREF1058_RS08785	0.52	-1.1
1,036,042	+		HMPREF1058_RS08785	0.52	-2.0
1,036,046	+		HMPREF1058_RS08785	0.52	-0.9
1,036,088	-		HMPREF1058_RS08785	0.55	-0.6
1,036,249	+		HMPREF1058_RS08785	0.67	-0.7
1,036,286	-		HMPREF1058_RS08785	0.69	-0.8
1,036,287	+		HMPREF1058_RS08785	0.70	-0.4
1,036,318	+		HMPREF1058_RS08785	0.72	+1.1
1,036,421	-		HMPREF1058_RS08785	0.79	-0.2
1,036,426	-		HMPREF1058_RS08785	0.80	-1.2
1,036,473	+		HMPREF1058_RS08785	0.83	-1.3
1,036,473	+		HMPREF1058_RS08785	0.83	-1.2
1,036,474	-		HMPREF1058_RS08785	0.83	+2.0
1,036,553	+		HMPREF1058_RS08785	0.89	-0.6
1,036,566	+		HMPREF1058_RS08785	0.90	-1.7
1,036,618	-				-0.8
1,036,676	-				-0.6
1,036,676	-				-0.7
1,036,676	-				+1.3
1,036,732	-				-0.7
1,036,742	+				+0.1
1,036,743	-				-0.5
1,036,751	+				-0.7
1,036,752	-				-0.4
1,036,756	+				-0.9
1,036,785	-				+1.2
1,036,855	+				-1.0
1,036,889	-				-0.9
1,037,084	-		HMPREF1058_RS08780	0.22	-0.0
1,037,121	+		HMPREF1058_RS08780	0.25	-0.7
1,037,167	-		HMPREF1058_RS08780	0.28	-3.1
1,037,376	+		HMPREF1058_RS08780	0.41	+0.2
1,037,376	+		HMPREF1058_RS08780	0.41	-0.8
1,037,377	-		HMPREF1058_RS08780	0.42	-1.4
1,037,408	+		HMPREF1058_RS08780	0.44	-0.6
1,037,539	+		HMPREF1058_RS08780	0.52	-1.1
1,037,544	+		HMPREF1058_RS08780	0.52	-1.0
1,037,548	+		HMPREF1058_RS08780	0.53	-1.2
1,037,642	+		HMPREF1058_RS08780	0.59	-1.8
1,037,747	+		HMPREF1058_RS08780	0.66	-0.7
1,037,748	-		HMPREF1058_RS08780	0.66	-0.9
1,037,926	-		HMPREF1058_RS08780	0.77	-0.8
1,037,959	+		HMPREF1058_RS08780	0.80	-0.9
1,037,959	+		HMPREF1058_RS08780	0.80	-0.9
1,037,959	+		HMPREF1058_RS08780	0.80	-1.3
1,037,960	-		HMPREF1058_RS08780	0.80	-0.9
1,038,047	+		HMPREF1058_RS08780	0.85	-0.0
1,038,067	+		HMPREF1058_RS08780	0.87	-2.1
1,038,107	+		HMPREF1058_RS08780	0.89	-1.5
1,038,123	-				-0.2
1,038,150	-				-0.9
1,038,230	+				-2.3
1,038,235	-				+0.0
1,038,235	-				-1.3
1,038,497	+		HMPREF1058_RS08775	0.50	-1.8
1,038,547	+		HMPREF1058_RS08775	0.62	-1.6
1,038,630	-		HMPREF1058_RS08775	0.82	+0.4
1,038,630	-		HMPREF1058_RS08775	0.82	-0.0
1,038,653	-		HMPREF1058_RS08775	0.87	+0.1
1,038,749	+				-1.8
1,038,787	+				-1.5
1,038,787	+				-1.5
1,038,788	-				-0.2
1,038,964	+		HMPREF1058_RS08770	0.14	-4.3
1,038,992	+		HMPREF1058_RS08770	0.19	-1.5
1,039,021	+		HMPREF1058_RS08770	0.25	-3.4
1,039,022	-		HMPREF1058_RS08770	0.25	+0.4
1,039,059	-		HMPREF1058_RS08770	0.32	-0.5
1,039,078	-		HMPREF1058_RS08770	0.35	+0.6
1,039,080	+		HMPREF1058_RS08770	0.35	-2.4
1,039,099	+		HMPREF1058_RS08770	0.39	-2.6
1,039,099	+		HMPREF1058_RS08770	0.39	-4.6
1,039,099	+		HMPREF1058_RS08770	0.39	-2.4
1,039,166	-		HMPREF1058_RS08770	0.51	-0.0
1,039,169	+		HMPREF1058_RS08770	0.51	-1.9
1,039,170	-		HMPREF1058_RS08770	0.52	-0.2
1,039,201	+		HMPREF1058_RS08770	0.57	-2.1