Experiment: D-Galactose 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02865 and HMPREF1058_RS02860 are separated by 19 nucleotides HMPREF1058_RS02860 and HMPREF1058_RS02855 are separated by 425 nucleotides HMPREF1058_RS02855 and HMPREF1058_RS0119985 are separated by 447 nucleotides
HMPREF1058_RS02865: HMPREF1058_RS02865 - PQQ-binding-like beta-propeller repeat protein, at 66,912 to 69,368
_RS02865
HMPREF1058_RS02860: HMPREF1058_RS02860 - hypothetical protein, at 69,388 to 69,903
_RS02860
HMPREF1058_RS02855: HMPREF1058_RS02855 - DEAD/DEAH box helicase, at 70,329 to 71,633
_RS02855
HMPREF1058_RS0119985: HMPREF1058_RS0119985 - NAD(P)H-dependent oxidoreductase subunit E, at 72,081 to 72,417
_RS0119985
Position (kb) 70
71
72 Strain fitness (log2 ratio) -2
-1
0
1
2 at 69.351 kb on + strand at 69.363 kb on - strand at 69.384 kb on + strand at 69.387 kb on + strand at 69.388 kb on - strand at 69.388 kb on - strand at 69.421 kb on + strand at 69.421 kb on + strand at 69.421 kb on + strand at 69.456 kb on + strand, within HMPREF1058_RS02860 at 69.457 kb on - strand, within HMPREF1058_RS02860 at 69.477 kb on - strand, within HMPREF1058_RS02860 at 69.492 kb on - strand, within HMPREF1058_RS02860 at 69.616 kb on - strand, within HMPREF1058_RS02860 at 69.617 kb on + strand, within HMPREF1058_RS02860 at 69.622 kb on - strand, within HMPREF1058_RS02860 at 69.631 kb on - strand, within HMPREF1058_RS02860 at 69.646 kb on + strand, within HMPREF1058_RS02860 at 69.648 kb on + strand, within HMPREF1058_RS02860 at 69.649 kb on - strand, within HMPREF1058_RS02860 at 69.655 kb on + strand, within HMPREF1058_RS02860 at 69.739 kb on + strand, within HMPREF1058_RS02860 at 69.739 kb on + strand, within HMPREF1058_RS02860 at 69.742 kb on - strand, within HMPREF1058_RS02860 at 69.744 kb on - strand, within HMPREF1058_RS02860 at 69.754 kb on + strand, within HMPREF1058_RS02860 at 69.784 kb on + strand, within HMPREF1058_RS02860 at 69.784 kb on + strand, within HMPREF1058_RS02860 at 69.784 kb on + strand, within HMPREF1058_RS02860 at 69.784 kb on + strand, within HMPREF1058_RS02860 at 69.796 kb on + strand, within HMPREF1058_RS02860 at 70.129 kb on - strand at 70.178 kb on + strand at 70.182 kb on + strand at 70.222 kb on + strand at 70.222 kb on + strand at 70.269 kb on - strand at 70.292 kb on + strand at 70.337 kb on + strand at 70.352 kb on + strand at 70.391 kb on + strand at 70.391 kb on + strand at 70.392 kb on - strand at 70.392 kb on - strand at 70.432 kb on + strand at 70.432 kb on + strand at 70.435 kb on + strand at 70.507 kb on + strand, within HMPREF1058_RS02855 at 70.507 kb on + strand, within HMPREF1058_RS02855 at 70.555 kb on + strand, within HMPREF1058_RS02855 at 70.580 kb on + strand, within HMPREF1058_RS02855 at 70.582 kb on + strand, within HMPREF1058_RS02855 at 70.588 kb on + strand, within HMPREF1058_RS02855 at 70.620 kb on - strand, within HMPREF1058_RS02855 at 70.816 kb on + strand, within HMPREF1058_RS02855 at 70.817 kb on - strand, within HMPREF1058_RS02855 at 70.897 kb on + strand, within HMPREF1058_RS02855 at 70.961 kb on + strand, within HMPREF1058_RS02855 at 70.962 kb on - strand, within HMPREF1058_RS02855 at 70.990 kb on - strand, within HMPREF1058_RS02855 at 71.050 kb on + strand, within HMPREF1058_RS02855 at 71.138 kb on + strand, within HMPREF1058_RS02855 at 71.225 kb on + strand, within HMPREF1058_RS02855 at 71.225 kb on + strand, within HMPREF1058_RS02855 at 71.225 kb on + strand, within HMPREF1058_RS02855 at 71.275 kb on - strand at 71.301 kb on + strand, within HMPREF1058_RS02855 at 71.347 kb on + strand, within HMPREF1058_RS02855 at 71.387 kb on - strand, within HMPREF1058_RS02855 at 71.407 kb on + strand, within HMPREF1058_RS02855 at 71.521 kb on - strand at 71.665 kb on - strand at 71.669 kb on + strand at 71.671 kb on + strand at 71.671 kb on + strand at 71.672 kb on - strand at 71.683 kb on + strand at 71.707 kb on + strand at 71.767 kb on - strand at 71.839 kb on - strand at 71.850 kb on - strand at 71.863 kb on - strand at 71.866 kb on - strand at 71.867 kb on + strand at 71.874 kb on - strand at 71.877 kb on + strand at 72.008 kb on + strand at 72.142 kb on + strand, within HMPREF1058_RS0119985 at 72.143 kb on - strand, within HMPREF1058_RS0119985 at 72.148 kb on + strand, within HMPREF1058_RS0119985 at 72.176 kb on - strand, within HMPREF1058_RS0119985 at 72.232 kb on + strand at 72.358 kb on - strand, within HMPREF1058_RS0119985 at 72.369 kb on - strand, within HMPREF1058_RS0119985 at 72.377 kb on + strand, within HMPREF1058_RS0119985 at 72.409 kb on - strand at 72.409 kb on - strand at 72.413 kb on + strand at 72.482 kb on + strand at 72.517 kb on - strand at 72.620 kb on - strand at 72.620 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 2.5 mg/ml (C) remove 69,351 + +0.3 69,363 - -0.7 69,384 + -1.4 69,387 + -1.0 69,388 - -0.2 69,388 - +0.4 69,421 + +0.6 69,421 + +0.0 69,421 + -0.5 69,456 + HMPREF1058_RS02860 0.13 +0.4 69,457 - HMPREF1058_RS02860 0.13 +0.1 69,477 - HMPREF1058_RS02860 0.17 -0.1 69,492 - HMPREF1058_RS02860 0.20 +1.8 69,616 - HMPREF1058_RS02860 0.44 +0.4 69,617 + HMPREF1058_RS02860 0.44 -0.1 69,622 - HMPREF1058_RS02860 0.45 -0.4 69,631 - HMPREF1058_RS02860 0.47 -1.8 69,646 + HMPREF1058_RS02860 0.50 -0.3 69,648 + HMPREF1058_RS02860 0.50 -0.1 69,649 - HMPREF1058_RS02860 0.51 +0.4 69,655 + HMPREF1058_RS02860 0.52 +0.0 69,739 + HMPREF1058_RS02860 0.68 -0.4 69,739 + HMPREF1058_RS02860 0.68 -0.6 69,742 - HMPREF1058_RS02860 0.69 -0.1 69,744 - HMPREF1058_RS02860 0.69 -0.1 69,754 + HMPREF1058_RS02860 0.71 +0.7 69,784 + HMPREF1058_RS02860 0.77 -1.3 69,784 + HMPREF1058_RS02860 0.77 +0.3 69,784 + HMPREF1058_RS02860 0.77 -0.5 69,784 + HMPREF1058_RS02860 0.77 -0.1 69,796 + HMPREF1058_RS02860 0.79 -0.6 70,129 - -1.0 70,178 + +0.6 70,182 + -0.3 70,222 + -0.0 70,222 + +0.5 70,269 - +0.4 70,292 + +0.8 70,337 + +0.4 70,352 + +0.2 70,391 + +0.4 70,391 + +0.4 70,392 - +1.9 70,392 - +0.4 70,432 + +0.2 70,432 + -0.3 70,435 + +1.0 70,507 + HMPREF1058_RS02855 0.14 +0.7 70,507 + HMPREF1058_RS02855 0.14 +0.6 70,555 + HMPREF1058_RS02855 0.17 +1.2 70,580 + HMPREF1058_RS02855 0.19 +0.5 70,582 + HMPREF1058_RS02855 0.19 +0.2 70,588 + HMPREF1058_RS02855 0.20 +0.3 70,620 - HMPREF1058_RS02855 0.22 +1.0 70,816 + HMPREF1058_RS02855 0.37 +0.6 70,817 - HMPREF1058_RS02855 0.37 +0.2 70,897 + HMPREF1058_RS02855 0.44 +0.0 70,961 + HMPREF1058_RS02855 0.48 +0.4 70,962 - HMPREF1058_RS02855 0.49 +0.4 70,990 - HMPREF1058_RS02855 0.51 -1.2 71,050 + HMPREF1058_RS02855 0.55 +0.0 71,138 + HMPREF1058_RS02855 0.62 -0.0 71,225 + HMPREF1058_RS02855 0.69 +1.2 71,225 + HMPREF1058_RS02855 0.69 +0.1 71,225 + HMPREF1058_RS02855 0.69 +0.4 71,275 - -0.4 71,301 + HMPREF1058_RS02855 0.74 +0.1 71,347 + HMPREF1058_RS02855 0.78 -0.0 71,387 - HMPREF1058_RS02855 0.81 +0.5 71,407 + HMPREF1058_RS02855 0.83 +0.7 71,521 - +0.1 71,665 - -0.3 71,669 + +0.5 71,671 + +1.0 71,671 + +0.5 71,672 - +0.9 71,683 + +0.9 71,707 + -1.3 71,767 - +0.1 71,839 - +0.8 71,850 - +0.8 71,863 - -0.1 71,866 - +0.3 71,867 + +0.8 71,874 - -0.4 71,877 + -1.0 72,008 + -0.2 72,142 + HMPREF1058_RS0119985 0.18 -1.0 72,143 - HMPREF1058_RS0119985 0.18 +1.2 72,148 + HMPREF1058_RS0119985 0.20 -0.1 72,176 - HMPREF1058_RS0119985 0.28 +0.2 72,232 + -0.8 72,358 - HMPREF1058_RS0119985 0.82 -0.5 72,369 - HMPREF1058_RS0119985 0.85 -0.1 72,377 + HMPREF1058_RS0119985 0.88 +0.1 72,409 - -0.5 72,409 - -0.2 72,413 + -0.9 72,482 + +0.1 72,517 - -0.4 72,620 - +0.9 72,620 - -0.3
Or see this region's nucleotide sequence