Experiment: (+)-Arabinogalactan; autoclaved 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16055 and HMPREF1058_RS16050 are separated by 7 nucleotides HMPREF1058_RS16050 and HMPREF1058_RS16045 are separated by 1 nucleotides HMPREF1058_RS16045 and HMPREF1058_RS16040 overlap by 4 nucleotides
HMPREF1058_RS16055: HMPREF1058_RS16055 - AAA family ATPase, at 769,057 to 770,673
_RS16055
HMPREF1058_RS16050: HMPREF1058_RS16050 - hypothetical protein, at 770,681 to 771,319
_RS16050
HMPREF1058_RS16045: HMPREF1058_RS16045 - hypothetical protein, at 771,321 to 773,771
_RS16045
HMPREF1058_RS16040: HMPREF1058_RS16040 - AAA family ATPase, at 773,768 to 777,652
_RS16040
Position (kb) 771
772
773
774 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 770.330 kb on + strand, within HMPREF1058_RS16055 at 770.358 kb on - strand, within HMPREF1058_RS16055 at 770.391 kb on + strand, within HMPREF1058_RS16055 at 770.643 kb on + strand at 770.694 kb on - strand at 770.696 kb on - strand at 770.750 kb on - strand, within HMPREF1058_RS16050 at 770.857 kb on + strand, within HMPREF1058_RS16050 at 770.937 kb on - strand, within HMPREF1058_RS16050 at 770.950 kb on + strand, within HMPREF1058_RS16050 at 770.950 kb on + strand, within HMPREF1058_RS16050 at 770.994 kb on + strand, within HMPREF1058_RS16050 at 770.999 kb on - strand, within HMPREF1058_RS16050 at 771.042 kb on + strand, within HMPREF1058_RS16050 at 771.061 kb on - strand, within HMPREF1058_RS16050 at 771.106 kb on + strand, within HMPREF1058_RS16050 at 771.108 kb on + strand, within HMPREF1058_RS16050 at 771.109 kb on - strand, within HMPREF1058_RS16050 at 771.109 kb on - strand, within HMPREF1058_RS16050 at 771.111 kb on + strand, within HMPREF1058_RS16050 at 771.112 kb on - strand, within HMPREF1058_RS16050 at 771.118 kb on + strand, within HMPREF1058_RS16050 at 771.119 kb on - strand, within HMPREF1058_RS16050 at 771.119 kb on - strand, within HMPREF1058_RS16050 at 771.119 kb on - strand, within HMPREF1058_RS16050 at 771.120 kb on + strand, within HMPREF1058_RS16050 at 771.121 kb on - strand, within HMPREF1058_RS16050 at 771.121 kb on - strand, within HMPREF1058_RS16050 at 771.121 kb on - strand, within HMPREF1058_RS16050 at 771.125 kb on + strand, within HMPREF1058_RS16050 at 771.125 kb on + strand, within HMPREF1058_RS16050 at 771.203 kb on + strand, within HMPREF1058_RS16050 at 771.203 kb on + strand, within HMPREF1058_RS16050 at 771.225 kb on + strand, within HMPREF1058_RS16050 at 771.256 kb on + strand at 771.262 kb on + strand at 771.262 kb on + strand at 771.262 kb on + strand at 771.266 kb on + strand at 771.266 kb on + strand at 771.266 kb on + strand at 771.267 kb on - strand at 771.319 kb on + strand at 771.332 kb on + strand at 771.333 kb on - strand at 771.355 kb on - strand at 771.512 kb on + strand at 771.512 kb on + strand at 771.513 kb on - strand at 771.514 kb on + strand at 771.514 kb on + strand at 771.515 kb on - strand at 771.519 kb on - strand at 771.572 kb on + strand, within HMPREF1058_RS16045 at 771.573 kb on - strand, within HMPREF1058_RS16045 at 771.814 kb on - strand, within HMPREF1058_RS16045 at 771.919 kb on - strand, within HMPREF1058_RS16045 at 771.933 kb on - strand, within HMPREF1058_RS16045 at 771.951 kb on + strand at 771.952 kb on - strand, within HMPREF1058_RS16045 at 771.995 kb on + strand, within HMPREF1058_RS16045 at 771.996 kb on - strand, within HMPREF1058_RS16045 at 772.026 kb on - strand, within HMPREF1058_RS16045 at 772.038 kb on + strand, within HMPREF1058_RS16045 at 772.110 kb on - strand, within HMPREF1058_RS16045 at 772.137 kb on + strand, within HMPREF1058_RS16045 at 772.163 kb on + strand, within HMPREF1058_RS16045 at 772.220 kb on + strand, within HMPREF1058_RS16045 at 772.233 kb on - strand, within HMPREF1058_RS16045 at 772.265 kb on + strand, within HMPREF1058_RS16045 at 772.265 kb on + strand, within HMPREF1058_RS16045 at 772.265 kb on + strand, within HMPREF1058_RS16045 at 772.265 kb on + strand, within HMPREF1058_RS16045 at 772.306 kb on + strand, within HMPREF1058_RS16045 at 772.310 kb on + strand, within HMPREF1058_RS16045 at 772.357 kb on - strand, within HMPREF1058_RS16045 at 772.541 kb on + strand, within HMPREF1058_RS16045 at 772.542 kb on - strand, within HMPREF1058_RS16045 at 772.542 kb on - strand, within HMPREF1058_RS16045 at 772.559 kb on + strand, within HMPREF1058_RS16045 at 772.559 kb on + strand, within HMPREF1058_RS16045 at 772.644 kb on - strand, within HMPREF1058_RS16045 at 772.681 kb on - strand, within HMPREF1058_RS16045 at 772.681 kb on - strand, within HMPREF1058_RS16045 at 772.734 kb on + strand, within HMPREF1058_RS16045 at 772.744 kb on + strand, within HMPREF1058_RS16045 at 772.849 kb on - strand, within HMPREF1058_RS16045 at 772.851 kb on + strand, within HMPREF1058_RS16045 at 772.851 kb on + strand, within HMPREF1058_RS16045 at 772.926 kb on + strand, within HMPREF1058_RS16045 at 772.959 kb on - strand, within HMPREF1058_RS16045 at 772.959 kb on - strand, within HMPREF1058_RS16045 at 772.961 kb on + strand at 773.085 kb on - strand, within HMPREF1058_RS16045 at 773.104 kb on + strand, within HMPREF1058_RS16045 at 773.105 kb on - strand, within HMPREF1058_RS16045 at 773.105 kb on - strand, within HMPREF1058_RS16045 at 773.106 kb on + strand, within HMPREF1058_RS16045 at 773.107 kb on - strand, within HMPREF1058_RS16045 at 773.107 kb on - strand, within HMPREF1058_RS16045 at 773.107 kb on - strand, within HMPREF1058_RS16045 at 773.159 kb on - strand, within HMPREF1058_RS16045 at 773.296 kb on - strand, within HMPREF1058_RS16045 at 773.310 kb on + strand, within HMPREF1058_RS16045 at 773.329 kb on + strand, within HMPREF1058_RS16045 at 773.329 kb on + strand, within HMPREF1058_RS16045 at 773.329 kb on + strand, within HMPREF1058_RS16045 at 773.332 kb on - strand, within HMPREF1058_RS16045 at 773.334 kb on - strand, within HMPREF1058_RS16045 at 773.350 kb on + strand, within HMPREF1058_RS16045 at 773.354 kb on + strand, within HMPREF1058_RS16045 at 773.355 kb on - strand, within HMPREF1058_RS16045 at 773.381 kb on - strand, within HMPREF1058_RS16045 at 773.409 kb on - strand, within HMPREF1058_RS16045 at 773.409 kb on - strand, within HMPREF1058_RS16045 at 773.557 kb on - strand at 773.617 kb on + strand at 773.617 kb on + strand at 773.617 kb on + strand at 773.617 kb on + strand at 773.618 kb on - strand at 773.618 kb on - strand at 773.618 kb on - strand at 773.621 kb on + strand at 773.621 kb on + strand at 773.622 kb on - strand at 773.622 kb on - strand at 773.622 kb on - strand at 773.637 kb on - strand at 773.651 kb on + strand at 773.691 kb on + strand at 773.717 kb on + strand at 773.718 kb on - strand at 773.727 kb on + strand at 773.775 kb on - strand at 773.833 kb on - strand at 773.842 kb on + strand at 773.876 kb on - strand at 773.911 kb on + strand at 773.911 kb on + strand at 773.912 kb on - strand at 774.022 kb on + strand at 774.023 kb on - strand at 774.024 kb on + strand at 774.072 kb on + strand at 774.072 kb on + strand at 774.079 kb on + strand at 774.089 kb on + strand at 774.174 kb on - strand, within HMPREF1058_RS16040 at 774.212 kb on + strand, within HMPREF1058_RS16040 at 774.213 kb on - strand, within HMPREF1058_RS16040 at 774.216 kb on + strand, within HMPREF1058_RS16040 at 774.216 kb on + strand, within HMPREF1058_RS16040 at 774.271 kb on + strand, within HMPREF1058_RS16040 at 774.279 kb on - strand, within HMPREF1058_RS16040 at 774.286 kb on + strand, within HMPREF1058_RS16040 at 774.299 kb on - strand, within HMPREF1058_RS16040 at 774.332 kb on - strand, within HMPREF1058_RS16040 at 774.332 kb on - strand, within HMPREF1058_RS16040 at 774.341 kb on + strand, within HMPREF1058_RS16040 at 774.341 kb on + strand, within HMPREF1058_RS16040 at 774.385 kb on - strand, within HMPREF1058_RS16040 at 774.400 kb on + strand, within HMPREF1058_RS16040 at 774.421 kb on + strand, within HMPREF1058_RS16040 at 774.422 kb on - strand, within HMPREF1058_RS16040 at 774.422 kb on - strand, within HMPREF1058_RS16040 at 774.422 kb on - strand, within HMPREF1058_RS16040 at 774.566 kb on - strand, within HMPREF1058_RS16040 at 774.566 kb on - strand, within HMPREF1058_RS16040 at 774.623 kb on - strand, within HMPREF1058_RS16040 at 774.679 kb on - strand, within HMPREF1058_RS16040 at 774.680 kb on - strand, within HMPREF1058_RS16040 at 774.683 kb on + strand, within HMPREF1058_RS16040 at 774.684 kb on - strand, within HMPREF1058_RS16040 at 774.766 kb on + strand, within HMPREF1058_RS16040 at 774.766 kb on + strand, within HMPREF1058_RS16040 at 774.766 kb on + strand, within HMPREF1058_RS16040 at 774.767 kb on - strand, within HMPREF1058_RS16040 at 774.769 kb on + strand, within HMPREF1058_RS16040
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; autoclaved 5 mg/ml (C) remove 770,330 + HMPREF1058_RS16055 0.79 +2.0 770,358 - HMPREF1058_RS16055 0.80 -0.4 770,391 + HMPREF1058_RS16055 0.82 +0.2 770,643 + +2.0 770,694 - +1.4 770,696 - -1.0 770,750 - HMPREF1058_RS16050 0.11 +0.2 770,857 + HMPREF1058_RS16050 0.28 +2.6 770,937 - HMPREF1058_RS16050 0.40 -0.3 770,950 + HMPREF1058_RS16050 0.42 +0.0 770,950 + HMPREF1058_RS16050 0.42 +2.4 770,994 + HMPREF1058_RS16050 0.49 +1.0 770,999 - HMPREF1058_RS16050 0.50 -0.7 771,042 + HMPREF1058_RS16050 0.56 -0.7 771,061 - HMPREF1058_RS16050 0.59 +0.1 771,106 + HMPREF1058_RS16050 0.67 +0.6 771,108 + HMPREF1058_RS16050 0.67 -0.2 771,109 - HMPREF1058_RS16050 0.67 -0.2 771,109 - HMPREF1058_RS16050 0.67 -0.7 771,111 + HMPREF1058_RS16050 0.67 +0.3 771,112 - HMPREF1058_RS16050 0.67 -0.6 771,118 + HMPREF1058_RS16050 0.68 +1.5 771,119 - HMPREF1058_RS16050 0.69 +5.0 771,119 - HMPREF1058_RS16050 0.69 +0.2 771,119 - HMPREF1058_RS16050 0.69 +0.8 771,120 + HMPREF1058_RS16050 0.69 +0.0 771,121 - HMPREF1058_RS16050 0.69 -1.1 771,121 - HMPREF1058_RS16050 0.69 +0.8 771,121 - HMPREF1058_RS16050 0.69 +0.5 771,125 + HMPREF1058_RS16050 0.69 -1.5 771,125 + HMPREF1058_RS16050 0.69 +1.1 771,203 + HMPREF1058_RS16050 0.82 -0.1 771,203 + HMPREF1058_RS16050 0.82 -2.1 771,225 + HMPREF1058_RS16050 0.85 +2.0 771,256 + +1.2 771,262 + -0.6 771,262 + +0.2 771,262 + +0.3 771,266 + +0.6 771,266 + +1.0 771,266 + +1.0 771,267 - +0.7 771,319 + +0.4 771,332 + +0.6 771,333 - -0.8 771,355 - +0.1 771,512 + +0.1 771,512 + +0.2 771,513 - -0.1 771,514 + +0.0 771,514 + +1.4 771,515 - +0.6 771,519 - -1.4 771,572 + HMPREF1058_RS16045 0.10 +0.6 771,573 - HMPREF1058_RS16045 0.10 +0.6 771,814 - HMPREF1058_RS16045 0.20 -0.0 771,919 - HMPREF1058_RS16045 0.24 +4.3 771,933 - HMPREF1058_RS16045 0.25 +0.4 771,951 + -1.2 771,952 - HMPREF1058_RS16045 0.26 -0.3 771,995 + HMPREF1058_RS16045 0.27 +0.6 771,996 - HMPREF1058_RS16045 0.28 +1.8 772,026 - HMPREF1058_RS16045 0.29 -1.7 772,038 + HMPREF1058_RS16045 0.29 -0.4 772,110 - HMPREF1058_RS16045 0.32 -0.0 772,137 + HMPREF1058_RS16045 0.33 -0.1 772,163 + HMPREF1058_RS16045 0.34 -0.9 772,220 + HMPREF1058_RS16045 0.37 -0.0 772,233 - HMPREF1058_RS16045 0.37 -1.6 772,265 + HMPREF1058_RS16045 0.39 +0.4 772,265 + HMPREF1058_RS16045 0.39 +0.6 772,265 + HMPREF1058_RS16045 0.39 -2.1 772,265 + HMPREF1058_RS16045 0.39 +0.3 772,306 + HMPREF1058_RS16045 0.40 +1.6 772,310 + HMPREF1058_RS16045 0.40 +1.3 772,357 - HMPREF1058_RS16045 0.42 +2.0 772,541 + HMPREF1058_RS16045 0.50 -0.6 772,542 - HMPREF1058_RS16045 0.50 -0.0 772,542 - HMPREF1058_RS16045 0.50 +0.7 772,559 + HMPREF1058_RS16045 0.51 -1.0 772,559 + HMPREF1058_RS16045 0.51 +2.0 772,644 - HMPREF1058_RS16045 0.54 +0.5 772,681 - HMPREF1058_RS16045 0.55 -0.5 772,681 - HMPREF1058_RS16045 0.55 -1.0 772,734 + HMPREF1058_RS16045 0.58 -0.0 772,744 + HMPREF1058_RS16045 0.58 +1.1 772,849 - HMPREF1058_RS16045 0.62 +0.5 772,851 + HMPREF1058_RS16045 0.62 +0.9 772,851 + HMPREF1058_RS16045 0.62 +0.5 772,926 + HMPREF1058_RS16045 0.65 +1.8 772,959 - HMPREF1058_RS16045 0.67 -2.6 772,959 - HMPREF1058_RS16045 0.67 -0.2 772,961 + +1.6 773,085 - HMPREF1058_RS16045 0.72 +5.2 773,104 + HMPREF1058_RS16045 0.73 -0.0 773,105 - HMPREF1058_RS16045 0.73 +2.7 773,105 - HMPREF1058_RS16045 0.73 +0.2 773,106 + HMPREF1058_RS16045 0.73 +1.7 773,107 - HMPREF1058_RS16045 0.73 -1.0 773,107 - HMPREF1058_RS16045 0.73 -1.0 773,107 - HMPREF1058_RS16045 0.73 -0.4 773,159 - HMPREF1058_RS16045 0.75 -0.0 773,296 - HMPREF1058_RS16045 0.81 -0.0 773,310 + HMPREF1058_RS16045 0.81 +0.4 773,329 + HMPREF1058_RS16045 0.82 +0.5 773,329 + HMPREF1058_RS16045 0.82 +0.0 773,329 + HMPREF1058_RS16045 0.82 -0.8 773,332 - HMPREF1058_RS16045 0.82 +0.3 773,334 - HMPREF1058_RS16045 0.82 +0.6 773,350 + HMPREF1058_RS16045 0.83 +5.4 773,354 + HMPREF1058_RS16045 0.83 +2.8 773,355 - HMPREF1058_RS16045 0.83 +0.0 773,381 - HMPREF1058_RS16045 0.84 +0.6 773,409 - HMPREF1058_RS16045 0.85 +0.6 773,409 - HMPREF1058_RS16045 0.85 -0.6 773,557 - +0.1 773,617 + -0.5 773,617 + +0.6 773,617 + -2.6 773,617 + +0.6 773,618 - +0.0 773,618 - -0.1 773,618 - +1.0 773,621 + -0.0 773,621 + +1.7 773,622 - +0.3 773,622 - +0.8 773,622 - -0.0 773,637 - +0.4 773,651 + +0.0 773,691 + -0.6 773,717 + +0.7 773,718 - +0.2 773,727 + -0.5 773,775 - -0.1 773,833 - -0.0 773,842 + +1.2 773,876 - -1.9 773,911 + +0.1 773,911 + -1.3 773,912 - -0.7 774,022 + +1.7 774,023 - -0.6 774,024 + +0.6 774,072 + -0.0 774,072 + +2.2 774,079 + -1.0 774,089 + -0.3 774,174 - HMPREF1058_RS16040 0.10 -2.0 774,212 + HMPREF1058_RS16040 0.11 +1.1 774,213 - HMPREF1058_RS16040 0.11 -3.1 774,216 + HMPREF1058_RS16040 0.12 -0.0 774,216 + HMPREF1058_RS16040 0.12 +0.3 774,271 + HMPREF1058_RS16040 0.13 +0.5 774,279 - HMPREF1058_RS16040 0.13 -3.1 774,286 + HMPREF1058_RS16040 0.13 +1.0 774,299 - HMPREF1058_RS16040 0.14 +0.6 774,332 - HMPREF1058_RS16040 0.15 -1.0 774,332 - HMPREF1058_RS16040 0.15 -2.2 774,341 + HMPREF1058_RS16040 0.15 -0.6 774,341 + HMPREF1058_RS16040 0.15 -1.3 774,385 - HMPREF1058_RS16040 0.16 -1.8 774,400 + HMPREF1058_RS16040 0.16 +0.3 774,421 + HMPREF1058_RS16040 0.17 -0.4 774,422 - HMPREF1058_RS16040 0.17 -2.4 774,422 - HMPREF1058_RS16040 0.17 -1.2 774,422 - HMPREF1058_RS16040 0.17 -1.6 774,566 - HMPREF1058_RS16040 0.21 -0.6 774,566 - HMPREF1058_RS16040 0.21 -3.3 774,623 - HMPREF1058_RS16040 0.22 -1.5 774,679 - HMPREF1058_RS16040 0.23 +0.5 774,680 - HMPREF1058_RS16040 0.23 +0.7 774,683 + HMPREF1058_RS16040 0.24 -0.3 774,684 - HMPREF1058_RS16040 0.24 -0.3 774,766 + HMPREF1058_RS16040 0.26 +0.4 774,766 + HMPREF1058_RS16040 0.26 -0.0 774,766 + HMPREF1058_RS16040 0.26 +0.1 774,767 - HMPREF1058_RS16040 0.26 +0.7 774,769 + HMPREF1058_RS16040 0.26 +4.8
Or see this region's nucleotide sequence