Experiment: (+)-Arabinogalactan; autoclaved 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09050 and HMPREF1058_RS09045 are separated by 140 nucleotides HMPREF1058_RS09045 and HMPREF1058_RS09040 are separated by 95 nucleotides
HMPREF1058_RS09050: HMPREF1058_RS09050 - hypothetical protein, at 956,382 to 957,221
_RS09050
HMPREF1058_RS09045: HMPREF1058_RS09045 - leucyl/phenylalanyl-tRNA--protein transferase, at 957,362 to 958,015
_RS09045
HMPREF1058_RS09040: HMPREF1058_RS09040 - AAA family ATPase, at 958,111 to 960,339
_RS09040
Position (kb) 957
958
959 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 956.427 kb on + strand at 956.520 kb on + strand, within HMPREF1058_RS09050 at 956.522 kb on + strand, within HMPREF1058_RS09050 at 956.567 kb on - strand, within HMPREF1058_RS09050 at 956.597 kb on - strand, within HMPREF1058_RS09050 at 956.602 kb on + strand, within HMPREF1058_RS09050 at 956.602 kb on + strand, within HMPREF1058_RS09050 at 956.603 kb on - strand, within HMPREF1058_RS09050 at 956.603 kb on - strand, within HMPREF1058_RS09050 at 956.608 kb on - strand, within HMPREF1058_RS09050 at 956.625 kb on - strand, within HMPREF1058_RS09050 at 956.625 kb on - strand, within HMPREF1058_RS09050 at 956.625 kb on - strand, within HMPREF1058_RS09050 at 956.659 kb on + strand, within HMPREF1058_RS09050 at 956.659 kb on + strand, within HMPREF1058_RS09050 at 956.660 kb on - strand, within HMPREF1058_RS09050 at 956.745 kb on - strand, within HMPREF1058_RS09050 at 956.795 kb on + strand, within HMPREF1058_RS09050 at 956.804 kb on + strand, within HMPREF1058_RS09050 at 956.828 kb on + strand, within HMPREF1058_RS09050 at 956.829 kb on - strand, within HMPREF1058_RS09050 at 956.830 kb on + strand, within HMPREF1058_RS09050 at 956.851 kb on + strand, within HMPREF1058_RS09050 at 956.863 kb on + strand, within HMPREF1058_RS09050 at 956.863 kb on + strand, within HMPREF1058_RS09050 at 956.864 kb on - strand, within HMPREF1058_RS09050 at 956.873 kb on - strand, within HMPREF1058_RS09050 at 956.873 kb on - strand, within HMPREF1058_RS09050 at 956.891 kb on - strand, within HMPREF1058_RS09050 at 956.926 kb on + strand, within HMPREF1058_RS09050 at 956.927 kb on - strand, within HMPREF1058_RS09050 at 956.953 kb on - strand, within HMPREF1058_RS09050 at 956.991 kb on + strand, within HMPREF1058_RS09050 at 957.054 kb on + strand, within HMPREF1058_RS09050 at 957.096 kb on + strand, within HMPREF1058_RS09050 at 957.097 kb on - strand, within HMPREF1058_RS09050 at 957.132 kb on - strand, within HMPREF1058_RS09050 at 957.140 kb on + strand at 957.188 kb on + strand at 957.210 kb on + strand at 957.211 kb on - strand at 957.284 kb on - strand at 957.310 kb on - strand at 957.310 kb on - strand at 957.312 kb on - strand at 957.390 kb on + strand at 957.390 kb on + strand at 957.391 kb on - strand at 957.397 kb on + strand at 957.397 kb on + strand at 957.399 kb on + strand at 957.400 kb on - strand at 957.400 kb on - strand at 957.413 kb on + strand at 957.413 kb on + strand at 957.414 kb on - strand at 957.417 kb on + strand at 957.417 kb on + strand at 957.438 kb on - strand, within HMPREF1058_RS09045 at 957.468 kb on - strand, within HMPREF1058_RS09045 at 957.468 kb on - strand, within HMPREF1058_RS09045 at 957.504 kb on + strand, within HMPREF1058_RS09045 at 957.508 kb on + strand, within HMPREF1058_RS09045 at 957.618 kb on - strand, within HMPREF1058_RS09045 at 957.788 kb on - strand, within HMPREF1058_RS09045 at 957.857 kb on + strand, within HMPREF1058_RS09045 at 957.879 kb on + strand, within HMPREF1058_RS09045 at 957.879 kb on + strand, within HMPREF1058_RS09045 at 957.891 kb on - strand, within HMPREF1058_RS09045 at 958.015 kb on + strand at 958.040 kb on + strand at 958.040 kb on + strand at 958.040 kb on + strand at 958.041 kb on - strand at 958.041 kb on - strand at 958.046 kb on - strand at 958.104 kb on - strand at 958.124 kb on - strand at 958.167 kb on + strand at 958.167 kb on + strand at 958.206 kb on + strand at 958.206 kb on + strand at 958.230 kb on + strand at 958.230 kb on + strand at 958.276 kb on + strand at 958.294 kb on - strand at 958.296 kb on - strand at 958.296 kb on - strand at 958.321 kb on + strand at 958.321 kb on + strand at 958.399 kb on - strand, within HMPREF1058_RS09040 at 958.507 kb on + strand, within HMPREF1058_RS09040 at 958.554 kb on + strand, within HMPREF1058_RS09040 at 958.554 kb on + strand, within HMPREF1058_RS09040 at 958.555 kb on - strand, within HMPREF1058_RS09040 at 958.555 kb on - strand, within HMPREF1058_RS09040 at 958.558 kb on + strand, within HMPREF1058_RS09040 at 958.558 kb on + strand, within HMPREF1058_RS09040 at 958.558 kb on + strand, within HMPREF1058_RS09040 at 958.559 kb on - strand, within HMPREF1058_RS09040 at 958.559 kb on - strand, within HMPREF1058_RS09040 at 958.560 kb on + strand, within HMPREF1058_RS09040 at 958.639 kb on + strand, within HMPREF1058_RS09040 at 958.639 kb on + strand, within HMPREF1058_RS09040 at 958.640 kb on - strand, within HMPREF1058_RS09040 at 958.640 kb on - strand, within HMPREF1058_RS09040 at 958.735 kb on + strand, within HMPREF1058_RS09040 at 958.735 kb on + strand, within HMPREF1058_RS09040 at 958.736 kb on - strand, within HMPREF1058_RS09040 at 958.736 kb on - strand, within HMPREF1058_RS09040 at 958.737 kb on + strand, within HMPREF1058_RS09040 at 958.818 kb on + strand, within HMPREF1058_RS09040 at 958.819 kb on - strand, within HMPREF1058_RS09040 at 958.838 kb on - strand, within HMPREF1058_RS09040 at 959.000 kb on + strand, within HMPREF1058_RS09040 at 959.001 kb on - strand, within HMPREF1058_RS09040
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; autoclaved 5 mg/ml (C) remove 956,427 + -0.4 956,520 + HMPREF1058_RS09050 0.16 -0.4 956,522 + HMPREF1058_RS09050 0.17 +1.0 956,567 - HMPREF1058_RS09050 0.22 -0.1 956,597 - HMPREF1058_RS09050 0.26 +0.2 956,602 + HMPREF1058_RS09050 0.26 -0.9 956,602 + HMPREF1058_RS09050 0.26 -1.5 956,603 - HMPREF1058_RS09050 0.26 +0.6 956,603 - HMPREF1058_RS09050 0.26 -0.4 956,608 - HMPREF1058_RS09050 0.27 +1.1 956,625 - HMPREF1058_RS09050 0.29 -0.0 956,625 - HMPREF1058_RS09050 0.29 -1.0 956,625 - HMPREF1058_RS09050 0.29 +0.7 956,659 + HMPREF1058_RS09050 0.33 +1.1 956,659 + HMPREF1058_RS09050 0.33 -1.0 956,660 - HMPREF1058_RS09050 0.33 -0.6 956,745 - HMPREF1058_RS09050 0.43 -1.5 956,795 + HMPREF1058_RS09050 0.49 +0.0 956,804 + HMPREF1058_RS09050 0.50 +0.2 956,828 + HMPREF1058_RS09050 0.53 +0.1 956,829 - HMPREF1058_RS09050 0.53 -0.5 956,830 + HMPREF1058_RS09050 0.53 -0.4 956,851 + HMPREF1058_RS09050 0.56 -0.1 956,863 + HMPREF1058_RS09050 0.57 +0.5 956,863 + HMPREF1058_RS09050 0.57 +0.6 956,864 - HMPREF1058_RS09050 0.57 -1.0 956,873 - HMPREF1058_RS09050 0.58 -0.4 956,873 - HMPREF1058_RS09050 0.58 +0.2 956,891 - HMPREF1058_RS09050 0.61 +0.4 956,926 + HMPREF1058_RS09050 0.65 -0.8 956,927 - HMPREF1058_RS09050 0.65 -0.5 956,953 - HMPREF1058_RS09050 0.68 -0.9 956,991 + HMPREF1058_RS09050 0.72 +1.0 957,054 + HMPREF1058_RS09050 0.80 -0.5 957,096 + HMPREF1058_RS09050 0.85 +1.8 957,097 - HMPREF1058_RS09050 0.85 +0.5 957,132 - HMPREF1058_RS09050 0.89 -0.1 957,140 + +0.0 957,188 + -0.2 957,210 + -1.2 957,211 - +0.3 957,284 - -0.2 957,310 - +0.4 957,310 - -0.3 957,312 - -0.2 957,390 + +0.5 957,390 + +1.1 957,391 - +1.0 957,397 + -0.1 957,397 + -0.4 957,399 + -0.3 957,400 - +0.1 957,400 - -0.3 957,413 + -1.4 957,413 + -0.2 957,414 - +3.7 957,417 + -0.4 957,417 + +1.4 957,438 - HMPREF1058_RS09045 0.12 -0.9 957,468 - HMPREF1058_RS09045 0.16 -0.4 957,468 - HMPREF1058_RS09045 0.16 -0.4 957,504 + HMPREF1058_RS09045 0.22 -0.6 957,508 + HMPREF1058_RS09045 0.22 -0.2 957,618 - HMPREF1058_RS09045 0.39 +1.4 957,788 - HMPREF1058_RS09045 0.65 +0.6 957,857 + HMPREF1058_RS09045 0.76 -2.2 957,879 + HMPREF1058_RS09045 0.79 -0.1 957,879 + HMPREF1058_RS09045 0.79 -1.2 957,891 - HMPREF1058_RS09045 0.81 +0.7 958,015 + -1.6 958,040 + -1.6 958,040 + -1.0 958,040 + -1.2 958,041 - -0.6 958,041 - +0.3 958,046 - +0.8 958,104 - +0.8 958,124 - -0.2 958,167 + -0.3 958,167 + +1.9 958,206 + +0.5 958,206 + -0.8 958,230 + -1.4 958,230 + +1.8 958,276 + -0.4 958,294 - -0.9 958,296 - +0.2 958,296 - -0.5 958,321 + +0.8 958,321 + +0.2 958,399 - HMPREF1058_RS09040 0.13 +1.2 958,507 + HMPREF1058_RS09040 0.18 +0.7 958,554 + HMPREF1058_RS09040 0.20 +1.6 958,554 + HMPREF1058_RS09040 0.20 +1.3 958,555 - HMPREF1058_RS09040 0.20 -0.4 958,555 - HMPREF1058_RS09040 0.20 -0.5 958,558 + HMPREF1058_RS09040 0.20 +0.9 958,558 + HMPREF1058_RS09040 0.20 -0.5 958,558 + HMPREF1058_RS09040 0.20 -0.9 958,559 - HMPREF1058_RS09040 0.20 +0.6 958,559 - HMPREF1058_RS09040 0.20 +1.9 958,560 + HMPREF1058_RS09040 0.20 -0.7 958,639 + HMPREF1058_RS09040 0.24 -0.6 958,639 + HMPREF1058_RS09040 0.24 +0.7 958,640 - HMPREF1058_RS09040 0.24 -0.5 958,640 - HMPREF1058_RS09040 0.24 +0.6 958,735 + HMPREF1058_RS09040 0.28 +0.0 958,735 + HMPREF1058_RS09040 0.28 +0.8 958,736 - HMPREF1058_RS09040 0.28 -2.2 958,736 - HMPREF1058_RS09040 0.28 +0.1 958,737 + HMPREF1058_RS09040 0.28 -1.8 958,818 + HMPREF1058_RS09040 0.32 +0.2 958,819 - HMPREF1058_RS09040 0.32 +0.5 958,838 - HMPREF1058_RS09040 0.33 -1.5 959,000 + HMPREF1058_RS09040 0.40 -0.2 959,001 - HMPREF1058_RS09040 0.40 -0.2
Or see this region's nucleotide sequence