Experiment: (+)-Arabinogalactan; autoclaved 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04795 and HMPREF1058_RS04790 are separated by 28 nucleotides HMPREF1058_RS04790 and HMPREF1058_RS04785 are separated by 31 nucleotides
HMPREF1058_RS04795: HMPREF1058_RS04795 - ankyrin repeat domain-containing protein, at 316,470 to 317,444
_RS04795
HMPREF1058_RS04790: HMPREF1058_RS04790 - DUF1266 domain-containing protein, at 317,473 to 318,510
_RS04790
HMPREF1058_RS04785: HMPREF1058_RS04785 - DUF1266 domain-containing protein, at 318,542 to 319,339
_RS04785
Position (kb) 317
318
319 Strain fitness (log2 ratio) -1
0
1
2 at 316.723 kb on + strand, within HMPREF1058_RS04795 at 316.723 kb on + strand, within HMPREF1058_RS04795 at 316.724 kb on - strand, within HMPREF1058_RS04795 at 316.781 kb on + strand, within HMPREF1058_RS04795 at 316.782 kb on - strand, within HMPREF1058_RS04795 at 316.782 kb on - strand, within HMPREF1058_RS04795 at 316.809 kb on - strand, within HMPREF1058_RS04795 at 316.899 kb on - strand, within HMPREF1058_RS04795 at 317.016 kb on - strand, within HMPREF1058_RS04795 at 317.040 kb on - strand, within HMPREF1058_RS04795 at 317.169 kb on - strand, within HMPREF1058_RS04795 at 317.298 kb on - strand, within HMPREF1058_RS04795 at 317.301 kb on - strand, within HMPREF1058_RS04795 at 317.323 kb on + strand, within HMPREF1058_RS04795 at 317.377 kb on - strand at 317.451 kb on - strand at 317.455 kb on + strand at 317.456 kb on - strand at 317.746 kb on + strand, within HMPREF1058_RS04790 at 317.747 kb on - strand, within HMPREF1058_RS04790 at 317.932 kb on + strand, within HMPREF1058_RS04790 at 317.933 kb on - strand, within HMPREF1058_RS04790 at 318.031 kb on - strand, within HMPREF1058_RS04790 at 318.031 kb on - strand, within HMPREF1058_RS04790 at 318.157 kb on - strand, within HMPREF1058_RS04790 at 318.171 kb on - strand, within HMPREF1058_RS04790 at 318.171 kb on - strand, within HMPREF1058_RS04790 at 318.171 kb on - strand, within HMPREF1058_RS04790 at 318.407 kb on + strand at 318.449 kb on + strand at 318.452 kb on + strand at 318.509 kb on - strand at 318.534 kb on + strand at 318.582 kb on + strand at 318.603 kb on - strand at 318.604 kb on + strand at 318.604 kb on + strand at 318.605 kb on - strand at 318.605 kb on - strand at 318.605 kb on - strand at 318.605 kb on - strand at 318.605 kb on - strand at 318.605 kb on - strand at 318.663 kb on + strand, within HMPREF1058_RS04785 at 318.728 kb on + strand, within HMPREF1058_RS04785 at 318.729 kb on - strand, within HMPREF1058_RS04785 at 318.729 kb on - strand, within HMPREF1058_RS04785 at 318.729 kb on - strand, within HMPREF1058_RS04785 at 318.795 kb on + strand, within HMPREF1058_RS04785 at 318.852 kb on - strand, within HMPREF1058_RS04785 at 318.893 kb on + strand, within HMPREF1058_RS04785 at 319.131 kb on - strand, within HMPREF1058_RS04785 at 319.230 kb on + strand, within HMPREF1058_RS04785 at 319.231 kb on - strand, within HMPREF1058_RS04785 at 319.231 kb on - strand, within HMPREF1058_RS04785 at 319.329 kb on - strand at 319.338 kb on - strand at 319.354 kb on + strand at 319.386 kb on - strand at 319.403 kb on - strand at 319.403 kb on - strand at 319.403 kb on - strand at 319.404 kb on + strand at 319.405 kb on - strand at 319.407 kb on - strand at 319.444 kb on - strand at 319.444 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; autoclaved 5 mg/ml (C) remove 316,723 + HMPREF1058_RS04795 0.26 -1.6 316,723 + HMPREF1058_RS04795 0.26 -0.6 316,724 - HMPREF1058_RS04795 0.26 +2.0 316,781 + HMPREF1058_RS04795 0.32 +0.1 316,782 - HMPREF1058_RS04795 0.32 -0.2 316,782 - HMPREF1058_RS04795 0.32 +0.0 316,809 - HMPREF1058_RS04795 0.35 -0.1 316,899 - HMPREF1058_RS04795 0.44 +0.1 317,016 - HMPREF1058_RS04795 0.56 -0.7 317,040 - HMPREF1058_RS04795 0.58 +1.0 317,169 - HMPREF1058_RS04795 0.72 +0.6 317,298 - HMPREF1058_RS04795 0.85 -0.3 317,301 - HMPREF1058_RS04795 0.85 +0.4 317,323 + HMPREF1058_RS04795 0.87 -1.6 317,377 - -1.0 317,451 - -1.4 317,455 + +2.2 317,456 - +0.0 317,746 + HMPREF1058_RS04790 0.26 +0.6 317,747 - HMPREF1058_RS04790 0.26 -0.8 317,932 + HMPREF1058_RS04790 0.44 +0.4 317,933 - HMPREF1058_RS04790 0.44 +1.6 318,031 - HMPREF1058_RS04790 0.54 -0.3 318,031 - HMPREF1058_RS04790 0.54 -0.3 318,157 - HMPREF1058_RS04790 0.66 -0.4 318,171 - HMPREF1058_RS04790 0.67 +0.4 318,171 - HMPREF1058_RS04790 0.67 -0.5 318,171 - HMPREF1058_RS04790 0.67 -0.1 318,407 + -1.0 318,449 + -0.3 318,452 + -1.0 318,509 - -0.2 318,534 + +0.9 318,582 + +2.0 318,603 - +1.1 318,604 + +0.7 318,604 + +0.5 318,605 - +0.0 318,605 - +0.0 318,605 - -1.6 318,605 - +1.0 318,605 - +0.7 318,605 - -0.1 318,663 + HMPREF1058_RS04785 0.15 -1.4 318,728 + HMPREF1058_RS04785 0.23 +2.0 318,729 - HMPREF1058_RS04785 0.23 -0.5 318,729 - HMPREF1058_RS04785 0.23 -0.9 318,729 - HMPREF1058_RS04785 0.23 +0.0 318,795 + HMPREF1058_RS04785 0.32 -0.8 318,852 - HMPREF1058_RS04785 0.39 +0.2 318,893 + HMPREF1058_RS04785 0.44 -0.7 319,131 - HMPREF1058_RS04785 0.74 +0.8 319,230 + HMPREF1058_RS04785 0.86 -0.1 319,231 - HMPREF1058_RS04785 0.86 -0.7 319,231 - HMPREF1058_RS04785 0.86 -0.7 319,329 - -0.0 319,338 - -1.0 319,354 + +0.1 319,386 - -0.1 319,403 - +0.6 319,403 - +0.8 319,403 - +0.5 319,404 + -0.6 319,405 - -0.1 319,407 - +1.1 319,444 - -0.4 319,444 - +0.7
Or see this region's nucleotide sequence