Experiment: (+)-Arabinogalactan; autoclaved 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17930 and HMPREF1058_RS17925 are separated by 180 nucleotides HMPREF1058_RS17925 and HMPREF1058_RS17920 are separated by 482 nucleotides
HMPREF1058_RS17930: HMPREF1058_RS17930 - glycogen debranching enzyme N-terminal domain-containing protein, at 297,590 to 299,530
_RS17930
HMPREF1058_RS17925: HMPREF1058_RS17925 - rhomboid family intramembrane serine protease, at 299,711 to 300,376
_RS17925
HMPREF1058_RS17920: HMPREF1058_RS17920 - formate-dependent phosphoribosylglycinamide formyltransferase, at 300,859 to 302,028
_RS17920
Position (kb) 299
300
301 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 298.723 kb on + strand, within HMPREF1058_RS17930 at 298.774 kb on + strand, within HMPREF1058_RS17930 at 298.830 kb on - strand, within HMPREF1058_RS17930 at 298.830 kb on - strand, within HMPREF1058_RS17930 at 298.964 kb on - strand, within HMPREF1058_RS17930 at 298.966 kb on - strand, within HMPREF1058_RS17930 at 298.966 kb on - strand, within HMPREF1058_RS17930 at 298.966 kb on - strand, within HMPREF1058_RS17930 at 298.968 kb on - strand, within HMPREF1058_RS17930 at 299.053 kb on + strand, within HMPREF1058_RS17930 at 299.056 kb on - strand, within HMPREF1058_RS17930 at 299.101 kb on + strand, within HMPREF1058_RS17930 at 299.129 kb on - strand, within HMPREF1058_RS17930 at 299.130 kb on + strand, within HMPREF1058_RS17930 at 299.204 kb on + strand, within HMPREF1058_RS17930 at 299.205 kb on - strand at 299.205 kb on - strand, within HMPREF1058_RS17930 at 299.207 kb on - strand, within HMPREF1058_RS17930 at 299.207 kb on - strand, within HMPREF1058_RS17930 at 299.212 kb on + strand, within HMPREF1058_RS17930 at 299.244 kb on + strand, within HMPREF1058_RS17930 at 299.244 kb on + strand, within HMPREF1058_RS17930 at 299.245 kb on - strand, within HMPREF1058_RS17930 at 299.245 kb on - strand, within HMPREF1058_RS17930 at 299.245 kb on - strand, within HMPREF1058_RS17930 at 299.245 kb on - strand, within HMPREF1058_RS17930 at 299.265 kb on + strand, within HMPREF1058_RS17930 at 299.281 kb on - strand, within HMPREF1058_RS17930 at 299.318 kb on + strand, within HMPREF1058_RS17930 at 299.348 kb on + strand at 299.348 kb on + strand at 299.349 kb on - strand at 299.349 kb on - strand at 299.349 kb on - strand at 299.431 kb on + strand at 299.520 kb on - strand at 299.520 kb on - strand at 299.530 kb on + strand at 299.531 kb on - strand at 299.531 kb on - strand at 299.542 kb on + strand at 299.677 kb on - strand at 299.679 kb on + strand at 299.699 kb on - strand at 299.834 kb on + strand, within HMPREF1058_RS17925 at 299.856 kb on + strand, within HMPREF1058_RS17925 at 299.905 kb on - strand, within HMPREF1058_RS17925 at 299.938 kb on - strand, within HMPREF1058_RS17925 at 299.978 kb on - strand, within HMPREF1058_RS17925 at 299.979 kb on + strand, within HMPREF1058_RS17925 at 300.021 kb on + strand, within HMPREF1058_RS17925 at 300.043 kb on + strand, within HMPREF1058_RS17925 at 300.058 kb on + strand, within HMPREF1058_RS17925 at 300.060 kb on + strand, within HMPREF1058_RS17925 at 300.123 kb on + strand, within HMPREF1058_RS17925 at 300.151 kb on - strand, within HMPREF1058_RS17925 at 300.152 kb on + strand, within HMPREF1058_RS17925 at 300.452 kb on + strand at 300.481 kb on - strand at 300.481 kb on - strand at 300.524 kb on + strand at 300.525 kb on - strand at 300.529 kb on + strand at 300.644 kb on + strand at 300.644 kb on + strand at 300.677 kb on + strand at 300.682 kb on + strand at 300.748 kb on + strand at 300.838 kb on + strand at 300.839 kb on - strand at 300.850 kb on + strand at 300.851 kb on - strand at 300.851 kb on - strand at 300.857 kb on + strand at 300.857 kb on + strand at 300.936 kb on - strand at 300.972 kb on + strand at 300.973 kb on - strand at 300.991 kb on - strand, within HMPREF1058_RS17920 at 300.999 kb on - strand, within HMPREF1058_RS17920 at 301.002 kb on + strand, within HMPREF1058_RS17920 at 301.002 kb on + strand, within HMPREF1058_RS17920
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; autoclaved 5 mg/ml (C) remove 298,723 + HMPREF1058_RS17930 0.58 +0.9 298,774 + HMPREF1058_RS17930 0.61 -1.9 298,830 - HMPREF1058_RS17930 0.64 -0.2 298,830 - HMPREF1058_RS17930 0.64 +0.3 298,964 - HMPREF1058_RS17930 0.71 +1.1 298,966 - HMPREF1058_RS17930 0.71 -1.4 298,966 - HMPREF1058_RS17930 0.71 -2.0 298,966 - HMPREF1058_RS17930 0.71 -1.7 298,968 - HMPREF1058_RS17930 0.71 +0.0 299,053 + HMPREF1058_RS17930 0.75 -0.1 299,056 - HMPREF1058_RS17930 0.76 -1.5 299,101 + HMPREF1058_RS17930 0.78 +0.5 299,129 - HMPREF1058_RS17930 0.79 -0.4 299,130 + HMPREF1058_RS17930 0.79 -0.7 299,204 + HMPREF1058_RS17930 0.83 +0.1 299,205 - +1.1 299,205 - HMPREF1058_RS17930 0.83 +0.3 299,207 - HMPREF1058_RS17930 0.83 -0.4 299,207 - HMPREF1058_RS17930 0.83 +1.4 299,212 + HMPREF1058_RS17930 0.84 -0.9 299,244 + HMPREF1058_RS17930 0.85 -1.5 299,244 + HMPREF1058_RS17930 0.85 +0.1 299,245 - HMPREF1058_RS17930 0.85 -1.6 299,245 - HMPREF1058_RS17930 0.85 -1.5 299,245 - HMPREF1058_RS17930 0.85 -1.1 299,245 - HMPREF1058_RS17930 0.85 -1.4 299,265 + HMPREF1058_RS17930 0.86 -0.9 299,281 - HMPREF1058_RS17930 0.87 +0.9 299,318 + HMPREF1058_RS17930 0.89 +0.3 299,348 + -0.1 299,348 + +1.4 299,349 - -1.6 299,349 - -1.2 299,349 - -1.9 299,431 + +0.3 299,520 - -0.5 299,520 - +1.7 299,530 + -0.3 299,531 - -0.5 299,531 - +0.4 299,542 + +0.3 299,677 - -0.1 299,679 + -0.5 299,699 - -2.0 299,834 + HMPREF1058_RS17925 0.18 +1.2 299,856 + HMPREF1058_RS17925 0.22 +0.9 299,905 - HMPREF1058_RS17925 0.29 +0.4 299,938 - HMPREF1058_RS17925 0.34 -1.3 299,978 - HMPREF1058_RS17925 0.40 +3.4 299,979 + HMPREF1058_RS17925 0.40 -0.9 300,021 + HMPREF1058_RS17925 0.47 +0.1 300,043 + HMPREF1058_RS17925 0.50 -0.7 300,058 + HMPREF1058_RS17925 0.52 +1.3 300,060 + HMPREF1058_RS17925 0.52 -1.5 300,123 + HMPREF1058_RS17925 0.62 +4.5 300,151 - HMPREF1058_RS17925 0.66 +0.9 300,152 + HMPREF1058_RS17925 0.66 +1.9 300,452 + -0.4 300,481 - +1.4 300,481 - +0.9 300,524 + +0.9 300,525 - +0.6 300,529 + +3.8 300,644 + -0.2 300,644 + -0.2 300,677 + -0.2 300,682 + -1.1 300,748 + -0.5 300,838 + +1.3 300,839 - -1.1 300,850 + -0.1 300,851 - +0.0 300,851 - +0.7 300,857 + -1.1 300,857 + -2.5 300,936 - -0.6 300,972 + -1.7 300,973 - -0.6 300,991 - HMPREF1058_RS17920 0.11 -1.4 300,999 - HMPREF1058_RS17920 0.12 -0.9 301,002 + HMPREF1058_RS17920 0.12 -0.3 301,002 + HMPREF1058_RS17920 0.12 -0.7
Or see this region's nucleotide sequence