Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03690

Experiment: (+)-Arabinogalactan; autoclaved 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)
214,679	-		HMPREF1058_RS03690	0.24	+1.2
214,679	-		HMPREF1058_RS03690	0.24	+0.6
214,742	-		HMPREF1058_RS03690	0.53	+5.1
214,743	-		HMPREF1058_RS03690	0.53	+2.1
214,951	+				-1.5
214,962	+				+0.9
214,966	+				-0.3
214,988	-				+0.2
215,029	-				+0.0
215,039	-				-0.4
215,373	-				+0.9
215,373	-				+1.9
215,728	+				-0.4
215,729	-				-0.6
215,732	+				-1.3
215,732	+				-1.1
215,733	-				-1.9
215,733	-				-0.7
215,734	+				-0.3
215,734	-				-0.8
215,839	-				-0.3