Experiment: (+)-Arabinogalactan; autoclaved 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02670 and HMPREF1058_RS02665 are separated by 1 nucleotides HMPREF1058_RS02665 and HMPREF1058_RS02660 overlap by 4 nucleotides HMPREF1058_RS02660 and HMPREF1058_RS02655 are separated by 21 nucleotides HMPREF1058_RS02655 and HMPREF1058_RS02650 are separated by 9 nucleotides
HMPREF1058_RS02670: HMPREF1058_RS02670 - Bro-N domain-containing protein, at 130,756 to 131,616
_RS02670
HMPREF1058_RS02665: HMPREF1058_RS02665 - type I-C CRISPR-associated protein Cas5, at 131,618 to 132,298
_RS02665
HMPREF1058_RS02660: HMPREF1058_RS02660 - type I-C CRISPR-associated protein Cas8c/Csd1, at 132,295 to 134,016
_RS02660
HMPREF1058_RS02655: HMPREF1058_RS02655 - type I-C CRISPR-associated protein Cas7/Csd2, at 134,038 to 134,889
_RS02655
HMPREF1058_RS02650: HMPREF1058_RS02650 - CRISPR-associated protein Cas4, at 134,899 to 135,564
_RS02650
Position (kb) 132
133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 131.321 kb on - strand, within HMPREF1058_RS02670 at 131.365 kb on - strand, within HMPREF1058_RS02670 at 131.388 kb on + strand, within HMPREF1058_RS02670 at 131.418 kb on + strand, within HMPREF1058_RS02670 at 131.419 kb on - strand, within HMPREF1058_RS02670 at 131.425 kb on - strand, within HMPREF1058_RS02670 at 131.457 kb on + strand, within HMPREF1058_RS02670 at 131.538 kb on - strand at 131.639 kb on + strand at 131.695 kb on - strand, within HMPREF1058_RS02665 at 131.815 kb on + strand, within HMPREF1058_RS02665 at 131.869 kb on + strand, within HMPREF1058_RS02665 at 131.884 kb on + strand, within HMPREF1058_RS02665 at 131.885 kb on - strand, within HMPREF1058_RS02665 at 131.885 kb on - strand, within HMPREF1058_RS02665 at 131.936 kb on + strand, within HMPREF1058_RS02665 at 132.020 kb on - strand, within HMPREF1058_RS02665 at 132.027 kb on - strand, within HMPREF1058_RS02665 at 132.175 kb on + strand, within HMPREF1058_RS02665 at 132.233 kb on - strand at 132.312 kb on - strand at 132.319 kb on + strand at 132.320 kb on - strand at 132.397 kb on - strand at 132.435 kb on - strand at 132.439 kb on - strand at 132.522 kb on + strand, within HMPREF1058_RS02660 at 132.526 kb on + strand, within HMPREF1058_RS02660 at 132.531 kb on - strand, within HMPREF1058_RS02660 at 132.566 kb on + strand, within HMPREF1058_RS02660 at 132.567 kb on - strand, within HMPREF1058_RS02660 at 132.570 kb on + strand, within HMPREF1058_RS02660 at 132.571 kb on - strand, within HMPREF1058_RS02660 at 132.571 kb on - strand, within HMPREF1058_RS02660 at 132.571 kb on - strand, within HMPREF1058_RS02660 at 132.584 kb on + strand, within HMPREF1058_RS02660 at 132.585 kb on - strand, within HMPREF1058_RS02660 at 132.607 kb on - strand, within HMPREF1058_RS02660 at 132.609 kb on - strand, within HMPREF1058_RS02660 at 132.611 kb on - strand, within HMPREF1058_RS02660 at 132.685 kb on - strand, within HMPREF1058_RS02660 at 132.717 kb on + strand, within HMPREF1058_RS02660 at 132.718 kb on - strand, within HMPREF1058_RS02660 at 132.718 kb on - strand, within HMPREF1058_RS02660 at 132.764 kb on + strand, within HMPREF1058_RS02660 at 132.765 kb on - strand, within HMPREF1058_RS02660 at 132.903 kb on - strand, within HMPREF1058_RS02660 at 132.903 kb on - strand, within HMPREF1058_RS02660 at 132.903 kb on - strand, within HMPREF1058_RS02660 at 132.976 kb on - strand, within HMPREF1058_RS02660 at 132.982 kb on + strand, within HMPREF1058_RS02660 at 132.983 kb on - strand, within HMPREF1058_RS02660 at 133.019 kb on - strand, within HMPREF1058_RS02660 at 133.020 kb on + strand, within HMPREF1058_RS02660 at 133.021 kb on - strand, within HMPREF1058_RS02660 at 133.088 kb on - strand, within HMPREF1058_RS02660 at 133.142 kb on + strand, within HMPREF1058_RS02660 at 133.205 kb on + strand, within HMPREF1058_RS02660 at 133.206 kb on - strand, within HMPREF1058_RS02660 at 133.208 kb on - strand, within HMPREF1058_RS02660 at 133.228 kb on + strand, within HMPREF1058_RS02660 at 133.228 kb on + strand, within HMPREF1058_RS02660 at 133.229 kb on - strand at 133.307 kb on + strand, within HMPREF1058_RS02660 at 133.310 kb on + strand, within HMPREF1058_RS02660 at 133.310 kb on + strand, within HMPREF1058_RS02660 at 133.310 kb on + strand, within HMPREF1058_RS02660 at 133.311 kb on - strand, within HMPREF1058_RS02660 at 133.352 kb on + strand, within HMPREF1058_RS02660 at 133.409 kb on - strand, within HMPREF1058_RS02660 at 133.500 kb on + strand, within HMPREF1058_RS02660 at 133.501 kb on - strand, within HMPREF1058_RS02660 at 133.502 kb on + strand, within HMPREF1058_RS02660 at 133.502 kb on + strand, within HMPREF1058_RS02660 at 133.581 kb on - strand, within HMPREF1058_RS02660 at 133.581 kb on - strand, within HMPREF1058_RS02660 at 133.607 kb on - strand, within HMPREF1058_RS02660 at 133.684 kb on + strand, within HMPREF1058_RS02660 at 133.740 kb on + strand, within HMPREF1058_RS02660 at 133.764 kb on + strand, within HMPREF1058_RS02660 at 133.832 kb on + strand, within HMPREF1058_RS02660 at 133.864 kb on + strand at 133.888 kb on - strand at 133.927 kb on - strand at 134.024 kb on - strand at 134.038 kb on - strand at 134.127 kb on - strand, within HMPREF1058_RS02655 at 134.127 kb on - strand, within HMPREF1058_RS02655 at 134.201 kb on + strand, within HMPREF1058_RS02655 at 134.238 kb on - strand, within HMPREF1058_RS02655 at 134.244 kb on - strand, within HMPREF1058_RS02655 at 134.394 kb on + strand, within HMPREF1058_RS02655 at 134.445 kb on + strand, within HMPREF1058_RS02655 at 134.447 kb on + strand, within HMPREF1058_RS02655 at 134.447 kb on + strand, within HMPREF1058_RS02655 at 134.448 kb on - strand, within HMPREF1058_RS02655 at 134.448 kb on - strand, within HMPREF1058_RS02655 at 134.475 kb on + strand, within HMPREF1058_RS02655 at 134.476 kb on - strand, within HMPREF1058_RS02655 at 134.493 kb on - strand, within HMPREF1058_RS02655 at 134.535 kb on + strand, within HMPREF1058_RS02655 at 134.536 kb on - strand, within HMPREF1058_RS02655 at 134.564 kb on - strand, within HMPREF1058_RS02655 at 134.572 kb on + strand, within HMPREF1058_RS02655 at 134.573 kb on - strand, within HMPREF1058_RS02655 at 134.598 kb on + strand, within HMPREF1058_RS02655 at 134.835 kb on + strand at 134.835 kb on + strand at 134.840 kb on + strand at 134.840 kb on + strand at 134.840 kb on + strand at 134.841 kb on - strand at 134.845 kb on - strand at 134.887 kb on + strand at 134.898 kb on + strand at 134.902 kb on + strand at 134.903 kb on - strand at 134.922 kb on + strand at 134.923 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan; autoclaved 5 mg/ml (C) remove 131,321 - HMPREF1058_RS02670 0.66 +0.7 131,365 - HMPREF1058_RS02670 0.71 -1.6 131,388 + HMPREF1058_RS02670 0.73 -0.3 131,418 + HMPREF1058_RS02670 0.77 -1.1 131,419 - HMPREF1058_RS02670 0.77 -0.5 131,425 - HMPREF1058_RS02670 0.78 +1.0 131,457 + HMPREF1058_RS02670 0.81 -1.1 131,538 - +1.4 131,639 + -0.9 131,695 - HMPREF1058_RS02665 0.11 -0.1 131,815 + HMPREF1058_RS02665 0.29 +0.1 131,869 + HMPREF1058_RS02665 0.37 +1.8 131,884 + HMPREF1058_RS02665 0.39 +0.2 131,885 - HMPREF1058_RS02665 0.39 +0.4 131,885 - HMPREF1058_RS02665 0.39 -0.1 131,936 + HMPREF1058_RS02665 0.47 +0.7 132,020 - HMPREF1058_RS02665 0.59 -2.1 132,027 - HMPREF1058_RS02665 0.60 +0.7 132,175 + HMPREF1058_RS02665 0.82 -1.5 132,233 - +0.6 132,312 - +0.3 132,319 + +0.4 132,320 - -0.1 132,397 - -0.3 132,435 - -2.0 132,439 - -0.5 132,522 + HMPREF1058_RS02660 0.13 +1.2 132,526 + HMPREF1058_RS02660 0.13 +1.2 132,531 - HMPREF1058_RS02660 0.14 -0.5 132,566 + HMPREF1058_RS02660 0.16 -0.5 132,567 - HMPREF1058_RS02660 0.16 -0.9 132,570 + HMPREF1058_RS02660 0.16 +1.2 132,571 - HMPREF1058_RS02660 0.16 -2.2 132,571 - HMPREF1058_RS02660 0.16 -0.6 132,571 - HMPREF1058_RS02660 0.16 +0.5 132,584 + HMPREF1058_RS02660 0.17 +0.2 132,585 - HMPREF1058_RS02660 0.17 +1.0 132,607 - HMPREF1058_RS02660 0.18 +1.3 132,609 - HMPREF1058_RS02660 0.18 -0.6 132,611 - HMPREF1058_RS02660 0.18 +0.9 132,685 - HMPREF1058_RS02660 0.23 +0.5 132,717 + HMPREF1058_RS02660 0.25 +0.0 132,718 - HMPREF1058_RS02660 0.25 -1.0 132,718 - HMPREF1058_RS02660 0.25 -0.5 132,764 + HMPREF1058_RS02660 0.27 -0.7 132,765 - HMPREF1058_RS02660 0.27 -0.6 132,903 - HMPREF1058_RS02660 0.35 +0.1 132,903 - HMPREF1058_RS02660 0.35 +0.5 132,903 - HMPREF1058_RS02660 0.35 +1.9 132,976 - HMPREF1058_RS02660 0.40 +3.0 132,982 + HMPREF1058_RS02660 0.40 -0.1 132,983 - HMPREF1058_RS02660 0.40 -0.9 133,019 - HMPREF1058_RS02660 0.42 +1.1 133,020 + HMPREF1058_RS02660 0.42 -0.2 133,021 - HMPREF1058_RS02660 0.42 -0.8 133,088 - HMPREF1058_RS02660 0.46 +2.8 133,142 + HMPREF1058_RS02660 0.49 -0.1 133,205 + HMPREF1058_RS02660 0.53 -0.3 133,206 - HMPREF1058_RS02660 0.53 +3.4 133,208 - HMPREF1058_RS02660 0.53 -0.0 133,228 + HMPREF1058_RS02660 0.54 -1.6 133,228 + HMPREF1058_RS02660 0.54 +1.2 133,229 - +0.7 133,307 + HMPREF1058_RS02660 0.59 +1.2 133,310 + HMPREF1058_RS02660 0.59 +2.0 133,310 + HMPREF1058_RS02660 0.59 -0.9 133,310 + HMPREF1058_RS02660 0.59 +0.7 133,311 - HMPREF1058_RS02660 0.59 +1.7 133,352 + HMPREF1058_RS02660 0.61 -1.6 133,409 - HMPREF1058_RS02660 0.65 +0.5 133,500 + HMPREF1058_RS02660 0.70 +0.7 133,501 - HMPREF1058_RS02660 0.70 -0.7 133,502 + HMPREF1058_RS02660 0.70 +0.3 133,502 + HMPREF1058_RS02660 0.70 +1.7 133,581 - HMPREF1058_RS02660 0.75 -0.3 133,581 - HMPREF1058_RS02660 0.75 -1.1 133,607 - HMPREF1058_RS02660 0.76 +1.7 133,684 + HMPREF1058_RS02660 0.81 +0.3 133,740 + HMPREF1058_RS02660 0.84 -0.1 133,764 + HMPREF1058_RS02660 0.85 -1.6 133,832 + HMPREF1058_RS02660 0.89 -1.1 133,864 + -0.2 133,888 - +0.0 133,927 - -0.3 134,024 - -2.0 134,038 - +0.1 134,127 - HMPREF1058_RS02655 0.10 -0.4 134,127 - HMPREF1058_RS02655 0.10 -0.0 134,201 + HMPREF1058_RS02655 0.19 -0.0 134,238 - HMPREF1058_RS02655 0.23 -1.1 134,244 - HMPREF1058_RS02655 0.24 -0.5 134,394 + HMPREF1058_RS02655 0.42 -2.8 134,445 + HMPREF1058_RS02655 0.48 -1.7 134,447 + HMPREF1058_RS02655 0.48 +0.1 134,447 + HMPREF1058_RS02655 0.48 +0.3 134,448 - HMPREF1058_RS02655 0.48 +0.2 134,448 - HMPREF1058_RS02655 0.48 -0.3 134,475 + HMPREF1058_RS02655 0.51 +3.7 134,476 - HMPREF1058_RS02655 0.51 +0.4 134,493 - HMPREF1058_RS02655 0.53 +0.1 134,535 + HMPREF1058_RS02655 0.58 +0.1 134,536 - HMPREF1058_RS02655 0.58 -0.5 134,564 - HMPREF1058_RS02655 0.62 +1.0 134,572 + HMPREF1058_RS02655 0.63 -0.4 134,573 - HMPREF1058_RS02655 0.63 +1.8 134,598 + HMPREF1058_RS02655 0.66 +0.4 134,835 + +1.3 134,835 + +0.2 134,840 + -1.5 134,840 + +1.2 134,840 + +0.4 134,841 - +0.2 134,845 - +0.5 134,887 + -1.2 134,898 + +1.1 134,902 + +0.8 134,903 - -0.5 134,922 + +0.2 134,923 - -1.7
Or see this region's nucleotide sequence