Experiment: D-Glucose 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17035 and HMPREF1058_RS17030 are separated by 26 nucleotides HMPREF1058_RS17030 and HMPREF1058_RS17025 are separated by 25 nucleotides
HMPREF1058_RS17035: HMPREF1058_RS17035 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 532,554 to 533,654
_RS17035
HMPREF1058_RS17030: HMPREF1058_RS17030 - DUF4837 family protein, at 533,681 to 534,745
_RS17030
HMPREF1058_RS17025: HMPREF1058_RS17025 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 534,771 to 535,820
_RS17025
Position (kb) 533
534
535 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 532.688 kb on - strand, within HMPREF1058_RS17035 at 532.688 kb on - strand, within HMPREF1058_RS17035 at 532.688 kb on - strand, within HMPREF1058_RS17035 at 532.692 kb on - strand, within HMPREF1058_RS17035 at 532.748 kb on + strand, within HMPREF1058_RS17035 at 532.770 kb on + strand, within HMPREF1058_RS17035 at 532.770 kb on + strand, within HMPREF1058_RS17035 at 532.770 kb on + strand, within HMPREF1058_RS17035 at 532.792 kb on + strand, within HMPREF1058_RS17035 at 532.793 kb on - strand, within HMPREF1058_RS17035 at 532.850 kb on - strand, within HMPREF1058_RS17035 at 532.850 kb on - strand, within HMPREF1058_RS17035 at 532.879 kb on + strand, within HMPREF1058_RS17035 at 532.965 kb on + strand, within HMPREF1058_RS17035 at 532.967 kb on + strand, within HMPREF1058_RS17035 at 533.034 kb on + strand, within HMPREF1058_RS17035 at 533.034 kb on + strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.067 kb on + strand, within HMPREF1058_RS17035 at 533.067 kb on + strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.117 kb on + strand, within HMPREF1058_RS17035 at 533.136 kb on + strand, within HMPREF1058_RS17035 at 533.228 kb on + strand at 533.231 kb on - strand, within HMPREF1058_RS17035 at 533.274 kb on - strand, within HMPREF1058_RS17035 at 533.274 kb on - strand, within HMPREF1058_RS17035 at 533.280 kb on - strand, within HMPREF1058_RS17035 at 533.499 kb on - strand, within HMPREF1058_RS17035 at 533.544 kb on - strand, within HMPREF1058_RS17035 at 533.586 kb on + strand at 533.594 kb on - strand at 533.641 kb on + strand at 533.656 kb on + strand at 533.657 kb on - strand at 533.658 kb on + strand at 533.661 kb on + strand at 533.662 kb on - strand at 533.662 kb on - strand at 533.662 kb on - strand at 533.662 kb on - strand at 533.663 kb on + strand at 533.664 kb on - strand at 533.664 kb on - strand at 533.669 kb on - strand at 533.669 kb on - strand at 533.671 kb on - strand at 533.702 kb on - strand at 533.736 kb on - strand at 534.010 kb on - strand, within HMPREF1058_RS17030 at 534.750 kb on - strand at 534.752 kb on - strand at 534.873 kb on + strand at 534.945 kb on - strand, within HMPREF1058_RS17025 at 535.019 kb on - strand, within HMPREF1058_RS17025 at 535.048 kb on - strand, within HMPREF1058_RS17025 at 535.053 kb on - strand, within HMPREF1058_RS17025 at 535.055 kb on - strand, within HMPREF1058_RS17025 at 535.095 kb on - strand, within HMPREF1058_RS17025 at 535.095 kb on - strand, within HMPREF1058_RS17025 at 535.103 kb on + strand, within HMPREF1058_RS17025 at 535.103 kb on + strand, within HMPREF1058_RS17025 at 535.103 kb on + strand, within HMPREF1058_RS17025 at 535.103 kb on + strand, within HMPREF1058_RS17025 at 535.103 kb on + strand, within HMPREF1058_RS17025 at 535.104 kb on - strand, within HMPREF1058_RS17025 at 535.146 kb on + strand, within HMPREF1058_RS17025 at 535.181 kb on + strand, within HMPREF1058_RS17025 at 535.182 kb on - strand, within HMPREF1058_RS17025 at 535.237 kb on - strand, within HMPREF1058_RS17025 at 535.368 kb on - strand, within HMPREF1058_RS17025 at 535.396 kb on + strand, within HMPREF1058_RS17025 at 535.407 kb on + strand, within HMPREF1058_RS17025 at 535.467 kb on - strand, within HMPREF1058_RS17025 at 535.527 kb on + strand, within HMPREF1058_RS17025 at 535.528 kb on - strand, within HMPREF1058_RS17025 at 535.528 kb on - strand, within HMPREF1058_RS17025 at 535.530 kb on - strand, within HMPREF1058_RS17025 at 535.708 kb on + strand, within HMPREF1058_RS17025 at 535.708 kb on + strand, within HMPREF1058_RS17025
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 5 mg/ml (C) remove 532,688 - HMPREF1058_RS17035 0.12 -2.6 532,688 - HMPREF1058_RS17035 0.12 -1.1 532,688 - HMPREF1058_RS17035 0.12 -2.7 532,692 - HMPREF1058_RS17035 0.13 -3.1 532,748 + HMPREF1058_RS17035 0.18 -1.4 532,770 + HMPREF1058_RS17035 0.20 -1.4 532,770 + HMPREF1058_RS17035 0.20 +0.6 532,770 + HMPREF1058_RS17035 0.20 +0.6 532,792 + HMPREF1058_RS17035 0.22 +0.0 532,793 - HMPREF1058_RS17035 0.22 -3.8 532,850 - HMPREF1058_RS17035 0.27 -2.3 532,850 - HMPREF1058_RS17035 0.27 -3.1 532,879 + HMPREF1058_RS17035 0.30 -2.8 532,965 + HMPREF1058_RS17035 0.37 -2.3 532,967 + HMPREF1058_RS17035 0.38 -1.0 533,034 + HMPREF1058_RS17035 0.44 -3.0 533,034 + HMPREF1058_RS17035 0.44 -2.0 533,035 - HMPREF1058_RS17035 0.44 -1.0 533,035 - HMPREF1058_RS17035 0.44 -1.3 533,035 - HMPREF1058_RS17035 0.44 -2.4 533,035 - HMPREF1058_RS17035 0.44 -1.5 533,035 - HMPREF1058_RS17035 0.44 -3.8 533,067 + HMPREF1058_RS17035 0.47 -2.5 533,067 + HMPREF1058_RS17035 0.47 -0.4 533,103 - HMPREF1058_RS17035 0.50 -3.5 533,103 - HMPREF1058_RS17035 0.50 -3.4 533,103 - HMPREF1058_RS17035 0.50 -1.0 533,103 - HMPREF1058_RS17035 0.50 -1.7 533,103 - HMPREF1058_RS17035 0.50 -2.8 533,117 + HMPREF1058_RS17035 0.51 -1.7 533,136 + HMPREF1058_RS17035 0.53 -1.8 533,228 + -1.0 533,231 - HMPREF1058_RS17035 0.61 -2.3 533,274 - HMPREF1058_RS17035 0.65 -2.5 533,274 - HMPREF1058_RS17035 0.65 -3.4 533,280 - HMPREF1058_RS17035 0.66 -2.1 533,499 - HMPREF1058_RS17035 0.86 -2.0 533,544 - HMPREF1058_RS17035 0.90 -1.8 533,586 + -2.0 533,594 - -2.2 533,641 + -3.8 533,656 + -1.0 533,657 - -4.1 533,658 + -2.2 533,661 + -2.7 533,662 - -1.1 533,662 - -0.5 533,662 - -2.5 533,662 - -2.0 533,663 + -0.4 533,664 - -1.2 533,664 - -0.6 533,669 - -0.4 533,669 - -0.2 533,671 - -0.2 533,702 - +0.1 533,736 - +0.3 534,010 - HMPREF1058_RS17030 0.31 -0.7 534,750 - -2.2 534,752 - -4.0 534,873 + -1.5 534,945 - HMPREF1058_RS17025 0.17 -0.5 535,019 - HMPREF1058_RS17025 0.24 -2.2 535,048 - HMPREF1058_RS17025 0.26 -0.5 535,053 - HMPREF1058_RS17025 0.27 -0.8 535,055 - HMPREF1058_RS17025 0.27 -0.2 535,095 - HMPREF1058_RS17025 0.31 -1.4 535,095 - HMPREF1058_RS17025 0.31 -2.6 535,103 + HMPREF1058_RS17025 0.32 +0.0 535,103 + HMPREF1058_RS17025 0.32 -1.5 535,103 + HMPREF1058_RS17025 0.32 -1.4 535,103 + HMPREF1058_RS17025 0.32 -2.8 535,103 + HMPREF1058_RS17025 0.32 -2.5 535,104 - HMPREF1058_RS17025 0.32 -1.0 535,146 + HMPREF1058_RS17025 0.36 -1.2 535,181 + HMPREF1058_RS17025 0.39 -2.4 535,182 - HMPREF1058_RS17025 0.39 -1.0 535,237 - HMPREF1058_RS17025 0.44 -0.5 535,368 - HMPREF1058_RS17025 0.57 -0.2 535,396 + HMPREF1058_RS17025 0.60 -4.2 535,407 + HMPREF1058_RS17025 0.61 -0.4 535,467 - HMPREF1058_RS17025 0.66 -1.0 535,527 + HMPREF1058_RS17025 0.72 -4.5 535,528 - HMPREF1058_RS17025 0.72 -0.6 535,528 - HMPREF1058_RS17025 0.72 -0.6 535,530 - HMPREF1058_RS17025 0.72 -1.7 535,708 + HMPREF1058_RS17025 0.89 -2.8 535,708 + HMPREF1058_RS17025 0.89 -1.4
Or see this region's nucleotide sequence