Experiment: D-Glucose 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16080 and HMPREF1058_RS16075 are separated by 90 nucleotides HMPREF1058_RS16075 and HMPREF1058_RS16070 are separated by 4 nucleotides HMPREF1058_RS16070 and HMPREF1058_RS16065 are separated by 2 nucleotides
HMPREF1058_RS16080: HMPREF1058_RS16080 - SIR2 family protein, at 762,733 to 766,209
_RS16080
HMPREF1058_RS16075: HMPREF1058_RS16075 - hypothetical protein, at 766,300 to 767,286
_RS16075
HMPREF1058_RS16070: HMPREF1058_RS16070 - helix-turn-helix transcriptional regulator, at 767,291 to 767,578
_RS16070
HMPREF1058_RS16065: HMPREF1058_RS16065 - DUF1016 family protein, at 767,581 to 768,639
_RS16065
Position (kb) 766
767
768 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 765.307 kb on - strand, within HMPREF1058_RS16080 at 765.358 kb on - strand, within HMPREF1058_RS16080 at 765.359 kb on + strand, within HMPREF1058_RS16080 at 765.359 kb on + strand, within HMPREF1058_RS16080 at 765.360 kb on - strand, within HMPREF1058_RS16080 at 765.360 kb on - strand, within HMPREF1058_RS16080 at 765.460 kb on - strand, within HMPREF1058_RS16080 at 765.480 kb on + strand, within HMPREF1058_RS16080 at 765.481 kb on - strand, within HMPREF1058_RS16080 at 765.482 kb on + strand, within HMPREF1058_RS16080 at 765.599 kb on - strand, within HMPREF1058_RS16080 at 765.676 kb on - strand, within HMPREF1058_RS16080 at 765.685 kb on + strand, within HMPREF1058_RS16080 at 765.685 kb on + strand, within HMPREF1058_RS16080 at 765.685 kb on + strand, within HMPREF1058_RS16080 at 765.735 kb on - strand, within HMPREF1058_RS16080 at 765.735 kb on - strand, within HMPREF1058_RS16080 at 765.740 kb on - strand, within HMPREF1058_RS16080 at 765.784 kb on + strand, within HMPREF1058_RS16080 at 765.877 kb on + strand at 765.878 kb on - strand at 765.916 kb on + strand at 765.972 kb on + strand at 765.973 kb on - strand at 765.979 kb on + strand at 765.980 kb on - strand at 765.980 kb on - strand at 766.010 kb on - strand at 766.053 kb on + strand at 766.054 kb on - strand at 766.100 kb on - strand at 766.103 kb on - strand at 766.126 kb on + strand at 766.127 kb on - strand at 766.127 kb on - strand at 766.127 kb on - strand at 766.134 kb on + strand at 766.134 kb on + strand at 766.134 kb on + strand at 766.134 kb on + strand at 766.138 kb on + strand at 766.138 kb on + strand at 766.179 kb on + strand at 766.180 kb on - strand at 766.184 kb on - strand at 766.197 kb on + strand at 766.197 kb on + strand at 766.228 kb on - strand at 766.242 kb on + strand at 766.243 kb on - strand at 766.248 kb on + strand at 766.273 kb on - strand at 766.273 kb on - strand at 766.351 kb on + strand at 766.351 kb on + strand at 766.351 kb on + strand at 766.352 kb on - strand at 766.377 kb on + strand at 766.378 kb on - strand at 766.378 kb on - strand at 766.378 kb on - strand at 766.446 kb on - strand, within HMPREF1058_RS16075 at 766.526 kb on - strand, within HMPREF1058_RS16075 at 766.665 kb on + strand, within HMPREF1058_RS16075 at 766.666 kb on - strand, within HMPREF1058_RS16075 at 766.676 kb on + strand, within HMPREF1058_RS16075 at 766.811 kb on - strand, within HMPREF1058_RS16075 at 766.960 kb on - strand, within HMPREF1058_RS16075 at 767.043 kb on - strand, within HMPREF1058_RS16075 at 767.043 kb on - strand, within HMPREF1058_RS16075 at 767.048 kb on + strand, within HMPREF1058_RS16075 at 767.049 kb on - strand, within HMPREF1058_RS16075 at 767.101 kb on + strand, within HMPREF1058_RS16075 at 767.131 kb on + strand, within HMPREF1058_RS16075 at 767.159 kb on - strand, within HMPREF1058_RS16075 at 767.195 kb on + strand at 767.195 kb on + strand at 767.196 kb on - strand at 767.422 kb on - strand, within HMPREF1058_RS16070 at 767.453 kb on - strand, within HMPREF1058_RS16070 at 767.498 kb on + strand, within HMPREF1058_RS16070 at 767.498 kb on + strand, within HMPREF1058_RS16070 at 767.508 kb on - strand, within HMPREF1058_RS16070 at 767.563 kb on + strand at 767.573 kb on + strand at 767.582 kb on + strand at 767.583 kb on - strand at 767.702 kb on + strand, within HMPREF1058_RS16065 at 767.713 kb on + strand, within HMPREF1058_RS16065 at 767.713 kb on + strand, within HMPREF1058_RS16065 at 767.737 kb on + strand, within HMPREF1058_RS16065 at 767.882 kb on + strand, within HMPREF1058_RS16065 at 767.883 kb on - strand, within HMPREF1058_RS16065 at 767.924 kb on - strand, within HMPREF1058_RS16065 at 767.931 kb on - strand, within HMPREF1058_RS16065 at 768.048 kb on + strand, within HMPREF1058_RS16065 at 768.188 kb on - strand, within HMPREF1058_RS16065 at 768.231 kb on - strand, within HMPREF1058_RS16065
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 5 mg/ml (C) remove 765,307 - HMPREF1058_RS16080 0.74 +0.4 765,358 - HMPREF1058_RS16080 0.75 +0.1 765,359 + HMPREF1058_RS16080 0.76 +0.1 765,359 + HMPREF1058_RS16080 0.76 -1.3 765,360 - HMPREF1058_RS16080 0.76 +0.8 765,360 - HMPREF1058_RS16080 0.76 +0.1 765,460 - HMPREF1058_RS16080 0.78 +0.6 765,480 + HMPREF1058_RS16080 0.79 -0.8 765,481 - HMPREF1058_RS16080 0.79 +0.1 765,482 + HMPREF1058_RS16080 0.79 +0.8 765,599 - HMPREF1058_RS16080 0.82 +0.7 765,676 - HMPREF1058_RS16080 0.85 -0.1 765,685 + HMPREF1058_RS16080 0.85 +1.1 765,685 + HMPREF1058_RS16080 0.85 -0.9 765,685 + HMPREF1058_RS16080 0.85 -0.3 765,735 - HMPREF1058_RS16080 0.86 +0.4 765,735 - HMPREF1058_RS16080 0.86 -0.1 765,740 - HMPREF1058_RS16080 0.86 -0.0 765,784 + HMPREF1058_RS16080 0.88 -1.4 765,877 + +0.7 765,878 - -0.5 765,916 + -0.1 765,972 + +1.4 765,973 - +0.7 765,979 + +1.1 765,980 - +1.0 765,980 - +0.3 766,010 - -0.5 766,053 + -0.6 766,054 - +0.1 766,100 - +0.3 766,103 - +1.3 766,126 + +0.8 766,127 - +0.6 766,127 - -0.7 766,127 - -0.1 766,134 + -0.4 766,134 + +2.8 766,134 + -0.8 766,134 + -1.2 766,138 + +1.3 766,138 + -1.5 766,179 + +0.1 766,180 - -0.1 766,184 - +0.5 766,197 + +0.5 766,197 + +0.1 766,228 - -0.5 766,242 + +1.5 766,243 - -0.6 766,248 + +0.4 766,273 - -0.4 766,273 - +1.0 766,351 + -0.8 766,351 + -0.5 766,351 + +0.0 766,352 - -0.9 766,377 + +0.4 766,378 - +0.7 766,378 - +0.7 766,378 - +0.0 766,446 - HMPREF1058_RS16075 0.15 +1.5 766,526 - HMPREF1058_RS16075 0.23 +0.3 766,665 + HMPREF1058_RS16075 0.37 -0.3 766,666 - HMPREF1058_RS16075 0.37 +0.1 766,676 + HMPREF1058_RS16075 0.38 -0.3 766,811 - HMPREF1058_RS16075 0.52 -0.2 766,960 - HMPREF1058_RS16075 0.67 +0.3 767,043 - HMPREF1058_RS16075 0.75 +0.9 767,043 - HMPREF1058_RS16075 0.75 +0.1 767,048 + HMPREF1058_RS16075 0.76 -0.2 767,049 - HMPREF1058_RS16075 0.76 +0.3 767,101 + HMPREF1058_RS16075 0.81 +0.1 767,131 + HMPREF1058_RS16075 0.84 +1.4 767,159 - HMPREF1058_RS16075 0.87 +0.1 767,195 + -0.3 767,195 + +0.2 767,196 - +0.2 767,422 - HMPREF1058_RS16070 0.45 -0.4 767,453 - HMPREF1058_RS16070 0.56 -0.3 767,498 + HMPREF1058_RS16070 0.72 -0.7 767,498 + HMPREF1058_RS16070 0.72 +0.2 767,508 - HMPREF1058_RS16070 0.75 -0.5 767,563 + -0.2 767,573 + -1.1 767,582 + -0.2 767,583 - -0.6 767,702 + HMPREF1058_RS16065 0.11 -1.6 767,713 + HMPREF1058_RS16065 0.12 -0.8 767,713 + HMPREF1058_RS16065 0.12 -0.5 767,737 + HMPREF1058_RS16065 0.15 -0.6 767,882 + HMPREF1058_RS16065 0.28 +0.1 767,883 - HMPREF1058_RS16065 0.29 -0.7 767,924 - HMPREF1058_RS16065 0.32 -0.2 767,931 - HMPREF1058_RS16065 0.33 -1.1 768,048 + HMPREF1058_RS16065 0.44 -0.7 768,188 - HMPREF1058_RS16065 0.57 +1.5 768,231 - HMPREF1058_RS16065 0.61 -2.4
Or see this region's nucleotide sequence