Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08435

Experiment: D-Glucose 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose 5 mg/ml (C)
1,147,561	-		HMPREF1058_RS08440	0.72	+0.0
1,147,576	-		HMPREF1058_RS08440	0.72	-0.7
1,147,576	-		HMPREF1058_RS08440	0.72	-0.5
1,147,582	+		HMPREF1058_RS08440	0.73	+0.0
1,147,606	+		HMPREF1058_RS08440	0.74	-0.8
1,147,610	+		HMPREF1058_RS08440	0.74	-1.5
1,147,611	-		HMPREF1058_RS08440	0.74	-0.8
1,147,611	-		HMPREF1058_RS08440	0.74	+0.2
1,147,633	+		HMPREF1058_RS08440	0.75	-1.7
1,147,634	-		HMPREF1058_RS08440	0.75	-0.9
1,147,674	-		HMPREF1058_RS08440	0.77	-0.6
1,147,708	-		HMPREF1058_RS08440	0.79	-0.5
1,147,715	+		HMPREF1058_RS08440	0.79	-0.4
1,147,715	+		HMPREF1058_RS08440	0.79	-0.7
1,147,715	+		HMPREF1058_RS08440	0.79	-1.0
1,147,846	-		HMPREF1058_RS08440	0.86	-0.9
1,147,855	-		HMPREF1058_RS08440	0.86	-0.3
1,147,903	+		HMPREF1058_RS08440	0.88	-1.4
1,147,903	+		HMPREF1058_RS08440	0.88	-1.3
1,147,903	+		HMPREF1058_RS08440	0.88	-0.2
1,147,905	+		HMPREF1058_RS08440	0.89	-1.7
1,147,912	-		HMPREF1058_RS08440	0.89	-0.7
1,147,944	+				-1.8
1,147,981	-				-2.1
1,148,026	-				+0.2
1,148,028	+				+0.4
1,148,060	-				+0.1
1,148,091	+				-1.2
1,148,135	-				-2.0
1,148,141	-				+0.0
1,148,203	+				+3.0
1,148,204	-				-1.0
1,148,260	+				+2.3
1,148,324	+				+2.7
1,148,403	+				+2.9
1,148,404	-				-1.2
1,148,409	+				+2.5
1,148,416	+				+1.4
1,148,482	-				-1.4
1,148,514	+				+2.9
1,148,515	-				-1.8
1,148,516	+				+3.2
1,148,522	-				-1.7
1,148,692	+				-0.9
1,148,749	+				-1.8
1,148,768	-				-0.9
1,148,783	-				+0.8
1,148,828	+				+0.4
1,148,829	-				-0.8
1,148,831	-				-1.0
1,148,831	-				-0.9
1,148,832	+				-1.4
1,148,832	+				-1.8
1,148,837	+				-1.9
1,148,837	+				+0.4
1,148,839	+				-2.0
1,148,839	+				-0.7
1,148,840	-				-1.9
1,149,018	+		HMPREF1058_RS08435	0.15	-0.4
1,149,019	-		HMPREF1058_RS08435	0.15	-2.4
1,149,019	-		HMPREF1058_RS08435	0.15	-1.7
1,149,019	-		HMPREF1058_RS08435	0.15	-1.8
1,149,021	+		HMPREF1058_RS08435	0.16	-0.8
1,149,021	+		HMPREF1058_RS08435	0.16	-1.7
1,149,055	+		HMPREF1058_RS08435	0.17	-1.7
1,149,140	+		HMPREF1058_RS08435	0.19	-0.7
1,149,141	-		HMPREF1058_RS08435	0.19	+2.0
1,149,142	+		HMPREF1058_RS08435	0.19	-0.3
1,149,142	-		HMPREF1058_RS08435	0.19	-1.2
1,149,143	-		HMPREF1058_RS08435	0.19	-0.1
1,149,143	-		HMPREF1058_RS08435	0.19	-1.5
1,149,181	+		HMPREF1058_RS08435	0.21	-1.3
1,149,254	+		HMPREF1058_RS08435	0.23	-1.4
1,149,290	-		HMPREF1058_RS08435	0.24	+1.0
1,149,293	-		HMPREF1058_RS08435	0.24	-1.1
1,149,413	+				-1.0
1,149,414	-		HMPREF1058_RS08435	0.28	-1.5
1,149,443	+		HMPREF1058_RS08435	0.29	-0.8
1,149,444	-		HMPREF1058_RS08435	0.29	-1.2
1,149,468	-		HMPREF1058_RS08435	0.30	-0.7
1,149,552	+		HMPREF1058_RS08435	0.33	-0.2
1,149,553	-		HMPREF1058_RS08435	0.33	-2.7
1,149,605	-		HMPREF1058_RS08435	0.34	-1.9
1,149,638	+		HMPREF1058_RS08435	0.35	-2.5
1,149,659	-		HMPREF1058_RS08435	0.36	-1.8
1,149,671	-		HMPREF1058_RS08435	0.36	-2.1
1,149,686	+		HMPREF1058_RS08435	0.37	-2.0
1,149,689	-		HMPREF1058_RS08435	0.37	-1.2
1,149,703	+		HMPREF1058_RS08435	0.37	-2.2
1,149,710	+		HMPREF1058_RS08435	0.38	-1.7
1,149,711	-		HMPREF1058_RS08435	0.38	-1.7
1,149,714	+		HMPREF1058_RS08435	0.38	-1.3
1,149,714	+		HMPREF1058_RS08435	0.38	-0.4
1,149,714	+		HMPREF1058_RS08435	0.38	-0.5
1,149,715	-		HMPREF1058_RS08435	0.38	-2.0
1,149,824	+		HMPREF1058_RS08435	0.41	-1.9
1,149,824	+		HMPREF1058_RS08435	0.41	-2.7
1,149,842	-		HMPREF1058_RS08435	0.42	-0.6
1,149,899	-		HMPREF1058_RS08435	0.44	-0.2
1,149,983	+		HMPREF1058_RS08435	0.47	-3.1
1,149,983	+		HMPREF1058_RS08435	0.47	-2.2
1,149,983	+		HMPREF1058_RS08435	0.47	-1.0
1,149,983	+		HMPREF1058_RS08435	0.47	-2.3
1,149,984	-		HMPREF1058_RS08435	0.47	-1.7
1,149,984	-		HMPREF1058_RS08435	0.47	-2.4
1,149,984	-		HMPREF1058_RS08435	0.47	-3.1
1,149,985	+		HMPREF1058_RS08435	0.47	-1.3
1,149,999	-				+0.3
1,150,003	+		HMPREF1058_RS08435	0.47	-0.9
1,150,008	-		HMPREF1058_RS08435	0.47	-2.1
1,150,008	-		HMPREF1058_RS08435	0.47	-1.2
1,150,008	-		HMPREF1058_RS08435	0.47	-2.3
1,150,028	-		HMPREF1058_RS08435	0.48	+1.8
1,150,031	-		HMPREF1058_RS08435	0.48	-0.8
1,150,041	-		HMPREF1058_RS08435	0.48	-0.3
1,150,073	+		HMPREF1058_RS08435	0.49	-1.1
1,150,076	-		HMPREF1058_RS08435	0.50	-0.9
1,150,097	+		HMPREF1058_RS08435	0.50	-1.6
1,150,097	+		HMPREF1058_RS08435	0.50	-1.1
1,150,220	-		HMPREF1058_RS08435	0.54	-2.6
1,150,220	-		HMPREF1058_RS08435	0.54	-0.8
1,150,244	-		HMPREF1058_RS08435	0.55	-0.5
1,150,244	-				+1.0
1,150,248	+		HMPREF1058_RS08435	0.55	-0.6
1,150,256	+		HMPREF1058_RS08435	0.55	-1.1
1,150,259	-		HMPREF1058_RS08435	0.55	+0.2
1,150,269	-		HMPREF1058_RS08435	0.56	-3.3
1,150,269	-		HMPREF1058_RS08435	0.56	+0.0
1,150,269	-		HMPREF1058_RS08435	0.56	-0.9
1,150,271	-		HMPREF1058_RS08435	0.56	-2.0
1,150,297	+		HMPREF1058_RS08435	0.57	-1.4
1,150,320	-		HMPREF1058_RS08435	0.57	-1.0
1,150,333	+		HMPREF1058_RS08435	0.58	+0.0
1,150,370	-		HMPREF1058_RS08435	0.59	-1.2
1,150,380	-		HMPREF1058_RS08435	0.59	-0.7
1,150,513	-		HMPREF1058_RS08435	0.64	-0.2
1,150,514	+		HMPREF1058_RS08435	0.64	-1.2
1,150,514	+		HMPREF1058_RS08435	0.64	-2.2
1,150,578	+		HMPREF1058_RS08435	0.66	-0.4
1,150,681	+		HMPREF1058_RS08435	0.69	-0.9
1,150,684	+		HMPREF1058_RS08435	0.69	-2.0
1,150,694	+		HMPREF1058_RS08435	0.69	-1.6
1,150,729	+		HMPREF1058_RS08435	0.71	-1.1
1,150,734	+		HMPREF1058_RS08435	0.71	-1.6
1,150,764	-		HMPREF1058_RS08435	0.72	-1.2
1,150,771	+		HMPREF1058_RS08435	0.72	-1.9
1,150,786	+		HMPREF1058_RS08435	0.72	-1.0
1,150,958	+		HMPREF1058_RS08435	0.78	-0.8
1,150,959	-		HMPREF1058_RS08435	0.78	-0.2
1,150,966	+		HMPREF1058_RS08435	0.78	-1.5
1,150,967	-		HMPREF1058_RS08435	0.78	-0.3
1,150,967	-		HMPREF1058_RS08435	0.78	-1.2
1,150,967	-		HMPREF1058_RS08435	0.78	+2.1
1,151,172	-		HMPREF1058_RS08435	0.85	+2.0
1,151,192	-		HMPREF1058_RS08435	0.85	-1.3
1,151,192	-		HMPREF1058_RS08435	0.85	-1.1
1,151,272	+		HMPREF1058_RS08435	0.88	-0.1
1,151,335	+				-1.8
1,151,381	+				-1.9
1,151,381	+				-1.6
1,151,382	-				-1.8
1,151,383	+				-1.1
1,151,384	-				-1.8
1,151,384	-				-1.2
1,151,390	-				-2.2
1,151,465	+				-0.9
1,151,465	+				-1.0
1,151,532	+				+0.0
1,151,545	+				-0.6
1,151,560	+				-1.8
1,151,561	-				-0.8
1,151,577	+				-1.7
1,151,580	-				-1.2
1,151,605	+				+0.7
1,151,675	-				-0.9
1,151,677	+				+1.6
1,151,822	+				-0.5
1,151,823	-				-0.5
1,151,823	-				+0.4
1,151,854	+		HMPREF1058_RS08430	0.12	-1.0
1,151,855	-		HMPREF1058_RS08430	0.12	+1.5
1,151,881	+		HMPREF1058_RS08430	0.13	-0.8
1,151,881	+		HMPREF1058_RS08430	0.13	-0.7
1,151,882	-		HMPREF1058_RS08430	0.13	-1.1
1,151,982	+		HMPREF1058_RS08430	0.19	-0.4
1,152,075	+		HMPREF1058_RS08430	0.25	-0.6
1,152,076	-		HMPREF1058_RS08430	0.25	-1.4
1,152,076	-		HMPREF1058_RS08430	0.25	-0.6
1,152,081	+		HMPREF1058_RS08430	0.25	-1.5
1,152,081	+		HMPREF1058_RS08430	0.25	-1.2
1,152,086	+		HMPREF1058_RS08430	0.25	-1.4
1,152,086	+		HMPREF1058_RS08430	0.25	-0.2
1,152,086	+		HMPREF1058_RS08430	0.25	-1.7
1,152,087	-		HMPREF1058_RS08430	0.26	+0.4
1,152,119	-		HMPREF1058_RS08430	0.27	-0.1
1,152,131	+		HMPREF1058_RS08430	0.28	-0.7
1,152,132	-		HMPREF1058_RS08430	0.28	-2.6
1,152,134	+		HMPREF1058_RS08430	0.28	-1.1
1,152,207	+		HMPREF1058_RS08430	0.33	-1.6
1,152,207	+		HMPREF1058_RS08430	0.33	+0.8
1,152,219	-		HMPREF1058_RS08430	0.33	-0.7
1,152,297	+		HMPREF1058_RS08430	0.38	+1.0
1,152,297	+		HMPREF1058_RS08430	0.38	-1.6
1,152,298	-		HMPREF1058_RS08430	0.38	-2.1
1,152,363	-		HMPREF1058_RS08430	0.42	-1.6
1,152,364	+		HMPREF1058_RS08430	0.42	-1.6
1,152,379	-		HMPREF1058_RS08430	0.43	-0.9
1,152,379	-		HMPREF1058_RS08430	0.43	-0.2
1,152,399	+		HMPREF1058_RS08430	0.44	-0.8
1,152,404	+		HMPREF1058_RS08430	0.44	-0.8
1,152,430	-		HMPREF1058_RS08430	0.46	-0.4
1,152,432	+		HMPREF1058_RS08430	0.46	-1.6
1,152,440	+		HMPREF1058_RS08430	0.46	-1.1
1,152,489	-		HMPREF1058_RS08430	0.49	-1.8
1,152,513	-		HMPREF1058_RS08430	0.51	-1.3
1,152,594	-		HMPREF1058_RS08430	0.55	-1.3
1,152,626	+		HMPREF1058_RS08430	0.57	-0.4