Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03695

Experiment: D-Glucose 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03700 and HMPREF1058_RS03695 are separated by 1 nucleotidesHMPREF1058_RS03695 and HMPREF1058_RS03690 overlap by 4 nucleotides HMPREF1058_RS03700: HMPREF1058_RS03700 - DNA cytosine methyltransferase, at 211,595 to 212,761 _RS03700 HMPREF1058_RS03695: HMPREF1058_RS03695 - N-6 DNA methylase, at 212,763 to 214,628 _RS03695 HMPREF1058_RS03690: HMPREF1058_RS03690 - helix-turn-helix transcriptional regulator, at 214,625 to 214,846 _RS03690 Position (kb) 212 213 214 215Strain fitness (log2 ratio) -1 0 1 2 3at 214.679 kb on - strand, within HMPREF1058_RS03690at 214.679 kb on - strand, within HMPREF1058_RS03690at 214.742 kb on - strand, within HMPREF1058_RS03690at 214.743 kb on - strand, within HMPREF1058_RS03690at 214.951 kb on + strandat 214.962 kb on + strandat 214.966 kb on + strandat 214.988 kb on - strandat 215.029 kb on - strandat 215.039 kb on - strandat 215.373 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 5 mg/ml (C)
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214,679 - HMPREF1058_RS03690 0.24 +0.8
214,679 - HMPREF1058_RS03690 0.24 -0.3
214,742 - HMPREF1058_RS03690 0.53 +3.4
214,743 - HMPREF1058_RS03690 0.53 +1.3
214,951 + +1.7
214,962 + +0.3
214,966 + -0.7
214,988 - +0.3
215,029 - -0.1
215,039 - +0.5
215,373 - +1.8

Or see this region's nucleotide sequence