Experiment: D-Glucose 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02190 and HMPREF1058_RS02185 are separated by 14 nucleotides HMPREF1058_RS02185 and HMPREF1058_RS02180 are separated by 6 nucleotides
HMPREF1058_RS02190: HMPREF1058_RS02190 - ABC transporter permease, at 260,983 to 262,233
_RS02190
HMPREF1058_RS02185: HMPREF1058_RS02185 - ABC transporter permease, at 262,248 to 263,423
_RS02185
HMPREF1058_RS02180: HMPREF1058_RS02180 - efflux RND transporter periplasmic adaptor subunit, at 263,430 to 264,416
_RS02180
Position (kb) 262
263
264 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 261.268 kb on + strand, within HMPREF1058_RS02190 at 261.269 kb on - strand, within HMPREF1058_RS02190 at 261.269 kb on - strand, within HMPREF1058_RS02190 at 261.304 kb on - strand, within HMPREF1058_RS02190 at 261.304 kb on - strand, within HMPREF1058_RS02190 at 261.364 kb on + strand, within HMPREF1058_RS02190 at 261.366 kb on + strand, within HMPREF1058_RS02190 at 261.368 kb on + strand, within HMPREF1058_RS02190 at 261.369 kb on - strand, within HMPREF1058_RS02190 at 261.406 kb on + strand, within HMPREF1058_RS02190 at 261.407 kb on - strand, within HMPREF1058_RS02190 at 261.447 kb on + strand, within HMPREF1058_RS02190 at 261.447 kb on + strand, within HMPREF1058_RS02190 at 261.449 kb on + strand, within HMPREF1058_RS02190 at 261.449 kb on + strand, within HMPREF1058_RS02190 at 261.450 kb on - strand, within HMPREF1058_RS02190 at 261.450 kb on - strand, within HMPREF1058_RS02190 at 261.467 kb on + strand, within HMPREF1058_RS02190 at 261.467 kb on + strand, within HMPREF1058_RS02190 at 261.467 kb on + strand, within HMPREF1058_RS02190 at 261.468 kb on - strand, within HMPREF1058_RS02190 at 261.468 kb on - strand, within HMPREF1058_RS02190 at 261.468 kb on - strand, within HMPREF1058_RS02190 at 261.469 kb on + strand, within HMPREF1058_RS02190 at 261.470 kb on - strand, within HMPREF1058_RS02190 at 261.470 kb on - strand, within HMPREF1058_RS02190 at 261.479 kb on + strand, within HMPREF1058_RS02190 at 261.480 kb on - strand, within HMPREF1058_RS02190 at 261.583 kb on + strand, within HMPREF1058_RS02190 at 261.584 kb on - strand, within HMPREF1058_RS02190 at 261.596 kb on - strand, within HMPREF1058_RS02190 at 261.754 kb on + strand, within HMPREF1058_RS02190 at 261.809 kb on + strand, within HMPREF1058_RS02190 at 261.809 kb on + strand, within HMPREF1058_RS02190 at 261.813 kb on - strand, within HMPREF1058_RS02190 at 261.814 kb on + strand, within HMPREF1058_RS02190 at 261.814 kb on + strand, within HMPREF1058_RS02190 at 261.814 kb on + strand, within HMPREF1058_RS02190 at 261.814 kb on + strand, within HMPREF1058_RS02190 at 261.819 kb on + strand, within HMPREF1058_RS02190 at 261.968 kb on - strand, within HMPREF1058_RS02190 at 261.992 kb on - strand, within HMPREF1058_RS02190 at 262.036 kb on + strand, within HMPREF1058_RS02190 at 262.075 kb on - strand, within HMPREF1058_RS02190 at 262.076 kb on + strand, within HMPREF1058_RS02190 at 262.076 kb on + strand, within HMPREF1058_RS02190 at 262.076 kb on + strand, within HMPREF1058_RS02190 at 262.077 kb on - strand, within HMPREF1058_RS02190 at 262.077 kb on - strand, within HMPREF1058_RS02190 at 262.078 kb on + strand, within HMPREF1058_RS02190 at 262.078 kb on + strand, within HMPREF1058_RS02190 at 262.079 kb on - strand, within HMPREF1058_RS02190 at 262.079 kb on - strand, within HMPREF1058_RS02190 at 262.080 kb on + strand, within HMPREF1058_RS02190 at 262.081 kb on - strand, within HMPREF1058_RS02190 at 262.088 kb on + strand, within HMPREF1058_RS02190 at 262.089 kb on - strand, within HMPREF1058_RS02190 at 262.129 kb on - strand at 262.209 kb on + strand at 262.210 kb on - strand at 262.257 kb on - strand at 262.259 kb on - strand at 262.259 kb on - strand at 262.259 kb on - strand at 262.260 kb on + strand at 262.260 kb on + strand at 262.260 kb on + strand at 262.260 kb on + strand at 262.260 kb on + strand at 262.261 kb on - strand at 262.261 kb on - strand at 262.261 kb on - strand at 262.261 kb on - strand at 262.261 kb on - strand at 262.264 kb on + strand at 262.265 kb on - strand at 262.270 kb on - strand at 262.351 kb on + strand at 262.383 kb on + strand, within HMPREF1058_RS02185 at 262.399 kb on + strand, within HMPREF1058_RS02185 at 262.400 kb on - strand, within HMPREF1058_RS02185 at 262.434 kb on + strand, within HMPREF1058_RS02185 at 262.554 kb on + strand, within HMPREF1058_RS02185 at 262.582 kb on - strand, within HMPREF1058_RS02185 at 262.584 kb on + strand, within HMPREF1058_RS02185 at 262.651 kb on + strand, within HMPREF1058_RS02185 at 262.651 kb on + strand, within HMPREF1058_RS02185 at 262.652 kb on - strand, within HMPREF1058_RS02185 at 262.659 kb on - strand, within HMPREF1058_RS02185 at 262.661 kb on - strand, within HMPREF1058_RS02185 at 262.793 kb on - strand, within HMPREF1058_RS02185 at 262.852 kb on + strand, within HMPREF1058_RS02185 at 262.852 kb on + strand, within HMPREF1058_RS02185 at 262.855 kb on - strand, within HMPREF1058_RS02185 at 262.861 kb on + strand, within HMPREF1058_RS02185 at 262.938 kb on - strand, within HMPREF1058_RS02185 at 262.938 kb on - strand, within HMPREF1058_RS02185 at 262.951 kb on + strand, within HMPREF1058_RS02185 at 262.952 kb on - strand, within HMPREF1058_RS02185 at 262.953 kb on + strand, within HMPREF1058_RS02185 at 262.953 kb on + strand, within HMPREF1058_RS02185 at 262.953 kb on + strand, within HMPREF1058_RS02185 at 262.953 kb on + strand, within HMPREF1058_RS02185 at 263.010 kb on - strand, within HMPREF1058_RS02185 at 263.011 kb on + strand, within HMPREF1058_RS02185 at 263.035 kb on + strand, within HMPREF1058_RS02185 at 263.036 kb on - strand, within HMPREF1058_RS02185 at 263.041 kb on + strand, within HMPREF1058_RS02185 at 263.041 kb on + strand, within HMPREF1058_RS02185 at 263.049 kb on - strand, within HMPREF1058_RS02185 at 263.050 kb on + strand, within HMPREF1058_RS02185 at 263.051 kb on - strand, within HMPREF1058_RS02185 at 263.110 kb on + strand, within HMPREF1058_RS02185 at 263.111 kb on - strand, within HMPREF1058_RS02185 at 263.114 kb on - strand, within HMPREF1058_RS02185 at 263.114 kb on - strand, within HMPREF1058_RS02185 at 263.123 kb on - strand, within HMPREF1058_RS02185 at 263.123 kb on - strand, within HMPREF1058_RS02185 at 263.329 kb on - strand at 263.347 kb on + strand at 263.347 kb on + strand at 263.348 kb on - strand at 263.350 kb on - strand at 263.431 kb on + strand at 263.554 kb on + strand, within HMPREF1058_RS02180 at 263.554 kb on + strand, within HMPREF1058_RS02180 at 263.554 kb on - strand, within HMPREF1058_RS02180 at 263.555 kb on - strand, within HMPREF1058_RS02180 at 263.559 kb on - strand, within HMPREF1058_RS02180 at 263.574 kb on - strand, within HMPREF1058_RS02180 at 263.575 kb on + strand, within HMPREF1058_RS02180 at 263.575 kb on + strand, within HMPREF1058_RS02180 at 263.575 kb on + strand, within HMPREF1058_RS02180 at 263.576 kb on - strand, within HMPREF1058_RS02180 at 263.576 kb on - strand, within HMPREF1058_RS02180 at 263.672 kb on + strand, within HMPREF1058_RS02180 at 263.802 kb on + strand, within HMPREF1058_RS02180 at 263.844 kb on + strand, within HMPREF1058_RS02180 at 264.168 kb on + strand, within HMPREF1058_RS02180 at 264.169 kb on - strand, within HMPREF1058_RS02180 at 264.349 kb on - strand at 264.374 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 5 mg/ml (C) remove 261,268 + HMPREF1058_RS02190 0.23 -1.2 261,269 - HMPREF1058_RS02190 0.23 -0.7 261,269 - HMPREF1058_RS02190 0.23 -0.0 261,304 - HMPREF1058_RS02190 0.26 -1.3 261,304 - HMPREF1058_RS02190 0.26 -0.3 261,364 + HMPREF1058_RS02190 0.30 -0.7 261,366 + HMPREF1058_RS02190 0.31 -0.7 261,368 + HMPREF1058_RS02190 0.31 +0.6 261,369 - HMPREF1058_RS02190 0.31 -1.5 261,406 + HMPREF1058_RS02190 0.34 -0.4 261,407 - HMPREF1058_RS02190 0.34 -0.0 261,447 + HMPREF1058_RS02190 0.37 -0.7 261,447 + HMPREF1058_RS02190 0.37 -1.8 261,449 + HMPREF1058_RS02190 0.37 -0.9 261,449 + HMPREF1058_RS02190 0.37 -0.9 261,450 - HMPREF1058_RS02190 0.37 -2.1 261,450 - HMPREF1058_RS02190 0.37 +0.3 261,467 + HMPREF1058_RS02190 0.39 -2.4 261,467 + HMPREF1058_RS02190 0.39 -1.9 261,467 + HMPREF1058_RS02190 0.39 -1.7 261,468 - HMPREF1058_RS02190 0.39 -1.4 261,468 - HMPREF1058_RS02190 0.39 -0.6 261,468 - HMPREF1058_RS02190 0.39 -2.2 261,469 + HMPREF1058_RS02190 0.39 -2.3 261,470 - HMPREF1058_RS02190 0.39 -1.3 261,470 - HMPREF1058_RS02190 0.39 -0.6 261,479 + HMPREF1058_RS02190 0.40 -1.9 261,480 - HMPREF1058_RS02190 0.40 +0.3 261,583 + HMPREF1058_RS02190 0.48 -0.8 261,584 - HMPREF1058_RS02190 0.48 -1.7 261,596 - HMPREF1058_RS02190 0.49 -2.1 261,754 + HMPREF1058_RS02190 0.62 -1.2 261,809 + HMPREF1058_RS02190 0.66 -1.4 261,809 + HMPREF1058_RS02190 0.66 -0.1 261,813 - HMPREF1058_RS02190 0.66 -1.1 261,814 + HMPREF1058_RS02190 0.66 -0.0 261,814 + HMPREF1058_RS02190 0.66 -1.7 261,814 + HMPREF1058_RS02190 0.66 -2.0 261,814 + HMPREF1058_RS02190 0.66 -1.5 261,819 + HMPREF1058_RS02190 0.67 -1.5 261,968 - HMPREF1058_RS02190 0.79 -1.1 261,992 - HMPREF1058_RS02190 0.81 -2.2 262,036 + HMPREF1058_RS02190 0.84 -1.1 262,075 - HMPREF1058_RS02190 0.87 -1.0 262,076 + HMPREF1058_RS02190 0.87 -0.5 262,076 + HMPREF1058_RS02190 0.87 -0.3 262,076 + HMPREF1058_RS02190 0.87 -0.7 262,077 - HMPREF1058_RS02190 0.87 -1.7 262,077 - HMPREF1058_RS02190 0.87 +0.3 262,078 + HMPREF1058_RS02190 0.88 -0.8 262,078 + HMPREF1058_RS02190 0.88 -1.0 262,079 - HMPREF1058_RS02190 0.88 -1.5 262,079 - HMPREF1058_RS02190 0.88 -0.6 262,080 + HMPREF1058_RS02190 0.88 -1.1 262,081 - HMPREF1058_RS02190 0.88 -1.3 262,088 + HMPREF1058_RS02190 0.88 +1.0 262,089 - HMPREF1058_RS02190 0.88 -2.6 262,129 - -1.7 262,209 + -1.0 262,210 - -0.4 262,257 - -0.7 262,259 - -1.5 262,259 - -1.3 262,259 - -1.1 262,260 + -0.9 262,260 + -2.1 262,260 + -1.0 262,260 + -0.6 262,260 + -2.5 262,261 - +0.3 262,261 - +1.1 262,261 - -1.2 262,261 - -0.8 262,261 - -0.5 262,264 + -1.8 262,265 - -1.5 262,270 - -2.6 262,351 + -0.6 262,383 + HMPREF1058_RS02185 0.11 -0.6 262,399 + HMPREF1058_RS02185 0.13 -1.8 262,400 - HMPREF1058_RS02185 0.13 -2.5 262,434 + HMPREF1058_RS02185 0.16 -0.3 262,554 + HMPREF1058_RS02185 0.26 -0.7 262,582 - HMPREF1058_RS02185 0.28 -1.6 262,584 + HMPREF1058_RS02185 0.29 -1.2 262,651 + HMPREF1058_RS02185 0.34 -0.5 262,651 + HMPREF1058_RS02185 0.34 -1.0 262,652 - HMPREF1058_RS02185 0.34 -0.3 262,659 - HMPREF1058_RS02185 0.35 -0.7 262,661 - HMPREF1058_RS02185 0.35 +1.3 262,793 - HMPREF1058_RS02185 0.46 -1.9 262,852 + HMPREF1058_RS02185 0.51 -0.7 262,852 + HMPREF1058_RS02185 0.51 +0.3 262,855 - HMPREF1058_RS02185 0.52 +0.0 262,861 + HMPREF1058_RS02185 0.52 -1.5 262,938 - HMPREF1058_RS02185 0.59 +0.1 262,938 - HMPREF1058_RS02185 0.59 -0.7 262,951 + HMPREF1058_RS02185 0.60 -1.6 262,952 - HMPREF1058_RS02185 0.60 -0.9 262,953 + HMPREF1058_RS02185 0.60 -1.3 262,953 + HMPREF1058_RS02185 0.60 -0.7 262,953 + HMPREF1058_RS02185 0.60 -1.5 262,953 + HMPREF1058_RS02185 0.60 -1.2 263,010 - HMPREF1058_RS02185 0.65 -1.2 263,011 + HMPREF1058_RS02185 0.65 -1.2 263,035 + HMPREF1058_RS02185 0.67 -1.2 263,036 - HMPREF1058_RS02185 0.67 -2.3 263,041 + HMPREF1058_RS02185 0.67 -0.2 263,041 + HMPREF1058_RS02185 0.67 -0.0 263,049 - HMPREF1058_RS02185 0.68 -0.8 263,050 + HMPREF1058_RS02185 0.68 -1.4 263,051 - HMPREF1058_RS02185 0.68 -1.8 263,110 + HMPREF1058_RS02185 0.73 -2.0 263,111 - HMPREF1058_RS02185 0.73 -1.1 263,114 - HMPREF1058_RS02185 0.74 -0.3 263,114 - HMPREF1058_RS02185 0.74 -1.0 263,123 - HMPREF1058_RS02185 0.74 -0.6 263,123 - HMPREF1058_RS02185 0.74 -1.7 263,329 - -1.1 263,347 + -0.6 263,347 + -0.0 263,348 - -1.2 263,350 - -0.8 263,431 + +0.7 263,554 + HMPREF1058_RS02180 0.13 -1.4 263,554 + HMPREF1058_RS02180 0.13 -1.6 263,554 - HMPREF1058_RS02180 0.13 -0.7 263,555 - HMPREF1058_RS02180 0.13 -1.2 263,559 - HMPREF1058_RS02180 0.13 -1.3 263,574 - HMPREF1058_RS02180 0.15 -2.5 263,575 + HMPREF1058_RS02180 0.15 -1.0 263,575 + HMPREF1058_RS02180 0.15 -0.2 263,575 + HMPREF1058_RS02180 0.15 -3.0 263,576 - HMPREF1058_RS02180 0.15 -2.3 263,576 - HMPREF1058_RS02180 0.15 -2.2 263,672 + HMPREF1058_RS02180 0.25 -0.3 263,802 + HMPREF1058_RS02180 0.38 -1.7 263,844 + HMPREF1058_RS02180 0.42 -0.6 264,168 + HMPREF1058_RS02180 0.75 -1.3 264,169 - HMPREF1058_RS02180 0.75 -1.5 264,349 - -0.6 264,374 + -0.5
Or see this region's nucleotide sequence