Experiment: D-Glucose 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02185 and HMPREF1058_RS02180 are separated by 6 nucleotides HMPREF1058_RS02180 and HMPREF1058_RS02175 are separated by 26 nucleotides
HMPREF1058_RS02185: HMPREF1058_RS02185 - ABC transporter permease, at 262,248 to 263,423
_RS02185
HMPREF1058_RS02180: HMPREF1058_RS02180 - efflux RND transporter periplasmic adaptor subunit, at 263,430 to 264,416
_RS02180
HMPREF1058_RS02175: HMPREF1058_RS02175 - TolC family protein, at 264,443 to 265,906
_RS02175
Position (kb) 263
264
265 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 262.434 kb on + strand, within HMPREF1058_RS02185 at 262.554 kb on + strand, within HMPREF1058_RS02185 at 262.582 kb on - strand, within HMPREF1058_RS02185 at 262.584 kb on + strand, within HMPREF1058_RS02185 at 262.651 kb on + strand, within HMPREF1058_RS02185 at 262.651 kb on + strand, within HMPREF1058_RS02185 at 262.652 kb on - strand, within HMPREF1058_RS02185 at 262.659 kb on - strand, within HMPREF1058_RS02185 at 262.661 kb on - strand, within HMPREF1058_RS02185 at 262.793 kb on - strand, within HMPREF1058_RS02185 at 262.852 kb on + strand, within HMPREF1058_RS02185 at 262.852 kb on + strand, within HMPREF1058_RS02185 at 262.855 kb on - strand, within HMPREF1058_RS02185 at 262.861 kb on + strand, within HMPREF1058_RS02185 at 262.938 kb on - strand, within HMPREF1058_RS02185 at 262.938 kb on - strand, within HMPREF1058_RS02185 at 262.951 kb on + strand, within HMPREF1058_RS02185 at 262.952 kb on - strand, within HMPREF1058_RS02185 at 262.953 kb on + strand, within HMPREF1058_RS02185 at 262.953 kb on + strand, within HMPREF1058_RS02185 at 262.953 kb on + strand, within HMPREF1058_RS02185 at 262.953 kb on + strand, within HMPREF1058_RS02185 at 263.010 kb on - strand, within HMPREF1058_RS02185 at 263.011 kb on + strand, within HMPREF1058_RS02185 at 263.035 kb on + strand, within HMPREF1058_RS02185 at 263.036 kb on - strand, within HMPREF1058_RS02185 at 263.041 kb on + strand, within HMPREF1058_RS02185 at 263.041 kb on + strand, within HMPREF1058_RS02185 at 263.049 kb on - strand, within HMPREF1058_RS02185 at 263.050 kb on + strand, within HMPREF1058_RS02185 at 263.051 kb on - strand, within HMPREF1058_RS02185 at 263.110 kb on + strand, within HMPREF1058_RS02185 at 263.111 kb on - strand, within HMPREF1058_RS02185 at 263.114 kb on - strand, within HMPREF1058_RS02185 at 263.114 kb on - strand, within HMPREF1058_RS02185 at 263.123 kb on - strand, within HMPREF1058_RS02185 at 263.123 kb on - strand, within HMPREF1058_RS02185 at 263.329 kb on - strand at 263.347 kb on + strand at 263.347 kb on + strand at 263.348 kb on - strand at 263.350 kb on - strand at 263.431 kb on + strand at 263.554 kb on + strand, within HMPREF1058_RS02180 at 263.554 kb on + strand, within HMPREF1058_RS02180 at 263.554 kb on - strand, within HMPREF1058_RS02180 at 263.555 kb on - strand, within HMPREF1058_RS02180 at 263.559 kb on - strand, within HMPREF1058_RS02180 at 263.574 kb on - strand, within HMPREF1058_RS02180 at 263.575 kb on + strand, within HMPREF1058_RS02180 at 263.575 kb on + strand, within HMPREF1058_RS02180 at 263.575 kb on + strand, within HMPREF1058_RS02180 at 263.576 kb on - strand, within HMPREF1058_RS02180 at 263.576 kb on - strand, within HMPREF1058_RS02180 at 263.672 kb on + strand, within HMPREF1058_RS02180 at 263.802 kb on + strand, within HMPREF1058_RS02180 at 263.844 kb on + strand, within HMPREF1058_RS02180 at 264.168 kb on + strand, within HMPREF1058_RS02180 at 264.169 kb on - strand, within HMPREF1058_RS02180 at 264.349 kb on - strand at 264.374 kb on + strand at 264.509 kb on + strand at 264.510 kb on - strand at 264.554 kb on + strand at 264.554 kb on + strand at 264.555 kb on - strand at 264.555 kb on - strand at 264.668 kb on + strand, within HMPREF1058_RS02175 at 264.668 kb on + strand, within HMPREF1058_RS02175 at 264.675 kb on + strand, within HMPREF1058_RS02175 at 264.675 kb on + strand, within HMPREF1058_RS02175 at 264.764 kb on + strand, within HMPREF1058_RS02175 at 264.771 kb on + strand, within HMPREF1058_RS02175 at 264.771 kb on + strand, within HMPREF1058_RS02175 at 264.807 kb on - strand, within HMPREF1058_RS02175 at 264.883 kb on - strand, within HMPREF1058_RS02175 at 264.883 kb on - strand, within HMPREF1058_RS02175 at 264.883 kb on - strand, within HMPREF1058_RS02175 at 264.904 kb on + strand, within HMPREF1058_RS02175 at 264.928 kb on + strand, within HMPREF1058_RS02175 at 265.016 kb on + strand, within HMPREF1058_RS02175 at 265.037 kb on + strand, within HMPREF1058_RS02175 at 265.037 kb on + strand, within HMPREF1058_RS02175 at 265.038 kb on - strand, within HMPREF1058_RS02175 at 265.067 kb on + strand, within HMPREF1058_RS02175 at 265.067 kb on + strand, within HMPREF1058_RS02175 at 265.068 kb on - strand, within HMPREF1058_RS02175 at 265.080 kb on - strand, within HMPREF1058_RS02175 at 265.103 kb on + strand, within HMPREF1058_RS02175 at 265.107 kb on - strand, within HMPREF1058_RS02175 at 265.125 kb on - strand, within HMPREF1058_RS02175 at 265.136 kb on + strand, within HMPREF1058_RS02175 at 265.137 kb on - strand, within HMPREF1058_RS02175 at 265.172 kb on + strand, within HMPREF1058_RS02175 at 265.185 kb on - strand, within HMPREF1058_RS02175 at 265.384 kb on - strand, within HMPREF1058_RS02175 at 265.397 kb on - strand, within HMPREF1058_RS02175 at 265.401 kb on + strand, within HMPREF1058_RS02175
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 5 mg/ml (C) remove 262,434 + HMPREF1058_RS02185 0.16 -0.3 262,554 + HMPREF1058_RS02185 0.26 -0.7 262,582 - HMPREF1058_RS02185 0.28 -1.6 262,584 + HMPREF1058_RS02185 0.29 -1.2 262,651 + HMPREF1058_RS02185 0.34 -0.5 262,651 + HMPREF1058_RS02185 0.34 -1.0 262,652 - HMPREF1058_RS02185 0.34 -0.3 262,659 - HMPREF1058_RS02185 0.35 -0.7 262,661 - HMPREF1058_RS02185 0.35 +1.3 262,793 - HMPREF1058_RS02185 0.46 -1.9 262,852 + HMPREF1058_RS02185 0.51 -0.7 262,852 + HMPREF1058_RS02185 0.51 +0.3 262,855 - HMPREF1058_RS02185 0.52 +0.0 262,861 + HMPREF1058_RS02185 0.52 -1.5 262,938 - HMPREF1058_RS02185 0.59 +0.1 262,938 - HMPREF1058_RS02185 0.59 -0.7 262,951 + HMPREF1058_RS02185 0.60 -1.6 262,952 - HMPREF1058_RS02185 0.60 -0.9 262,953 + HMPREF1058_RS02185 0.60 -1.3 262,953 + HMPREF1058_RS02185 0.60 -0.7 262,953 + HMPREF1058_RS02185 0.60 -1.5 262,953 + HMPREF1058_RS02185 0.60 -1.2 263,010 - HMPREF1058_RS02185 0.65 -1.2 263,011 + HMPREF1058_RS02185 0.65 -1.2 263,035 + HMPREF1058_RS02185 0.67 -1.2 263,036 - HMPREF1058_RS02185 0.67 -2.3 263,041 + HMPREF1058_RS02185 0.67 -0.2 263,041 + HMPREF1058_RS02185 0.67 -0.0 263,049 - HMPREF1058_RS02185 0.68 -0.8 263,050 + HMPREF1058_RS02185 0.68 -1.4 263,051 - HMPREF1058_RS02185 0.68 -1.8 263,110 + HMPREF1058_RS02185 0.73 -2.0 263,111 - HMPREF1058_RS02185 0.73 -1.1 263,114 - HMPREF1058_RS02185 0.74 -0.3 263,114 - HMPREF1058_RS02185 0.74 -1.0 263,123 - HMPREF1058_RS02185 0.74 -0.6 263,123 - HMPREF1058_RS02185 0.74 -1.7 263,329 - -1.1 263,347 + -0.6 263,347 + -0.0 263,348 - -1.2 263,350 - -0.8 263,431 + +0.7 263,554 + HMPREF1058_RS02180 0.13 -1.4 263,554 + HMPREF1058_RS02180 0.13 -1.6 263,554 - HMPREF1058_RS02180 0.13 -0.7 263,555 - HMPREF1058_RS02180 0.13 -1.2 263,559 - HMPREF1058_RS02180 0.13 -1.3 263,574 - HMPREF1058_RS02180 0.15 -2.5 263,575 + HMPREF1058_RS02180 0.15 -1.0 263,575 + HMPREF1058_RS02180 0.15 -0.2 263,575 + HMPREF1058_RS02180 0.15 -3.0 263,576 - HMPREF1058_RS02180 0.15 -2.3 263,576 - HMPREF1058_RS02180 0.15 -2.2 263,672 + HMPREF1058_RS02180 0.25 -0.3 263,802 + HMPREF1058_RS02180 0.38 -1.7 263,844 + HMPREF1058_RS02180 0.42 -0.6 264,168 + HMPREF1058_RS02180 0.75 -1.3 264,169 - HMPREF1058_RS02180 0.75 -1.5 264,349 - -0.6 264,374 + -0.5 264,509 + -1.0 264,510 - -1.6 264,554 + -2.0 264,554 + -1.7 264,555 - -1.2 264,555 - -1.7 264,668 + HMPREF1058_RS02175 0.15 +0.7 264,668 + HMPREF1058_RS02175 0.15 -1.7 264,675 + HMPREF1058_RS02175 0.16 -2.2 264,675 + HMPREF1058_RS02175 0.16 -1.2 264,764 + HMPREF1058_RS02175 0.22 +1.3 264,771 + HMPREF1058_RS02175 0.22 -1.1 264,771 + HMPREF1058_RS02175 0.22 -1.1 264,807 - HMPREF1058_RS02175 0.25 -1.3 264,883 - HMPREF1058_RS02175 0.30 -0.7 264,883 - HMPREF1058_RS02175 0.30 +0.3 264,883 - HMPREF1058_RS02175 0.30 -0.7 264,904 + HMPREF1058_RS02175 0.31 -1.9 264,928 + HMPREF1058_RS02175 0.33 -1.7 265,016 + HMPREF1058_RS02175 0.39 -2.6 265,037 + HMPREF1058_RS02175 0.41 -2.1 265,037 + HMPREF1058_RS02175 0.41 -2.7 265,038 - HMPREF1058_RS02175 0.41 -1.2 265,067 + HMPREF1058_RS02175 0.43 -0.7 265,067 + HMPREF1058_RS02175 0.43 -1.2 265,068 - HMPREF1058_RS02175 0.43 +0.5 265,080 - HMPREF1058_RS02175 0.44 -0.8 265,103 + HMPREF1058_RS02175 0.45 -1.2 265,107 - HMPREF1058_RS02175 0.45 -1.3 265,125 - HMPREF1058_RS02175 0.47 -3.1 265,136 + HMPREF1058_RS02175 0.47 -2.3 265,137 - HMPREF1058_RS02175 0.47 -1.9 265,172 + HMPREF1058_RS02175 0.50 -1.2 265,185 - HMPREF1058_RS02175 0.51 -1.5 265,384 - HMPREF1058_RS02175 0.64 -2.4 265,397 - HMPREF1058_RS02175 0.65 -1.6 265,401 + HMPREF1058_RS02175 0.65 -1.7
Or see this region's nucleotide sequence