Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14400

Experiment: D-Glucose 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS14410 and HMPREF1058_RS14405 are separated by 30 nucleotidesHMPREF1058_RS14405 and HMPREF1058_RS14400 are separated by 267 nucleotidesHMPREF1058_RS14400 and HMPREF1058_RS14395 are separated by 62 nucleotidesHMPREF1058_RS14395 and HMPREF1058_RS21430 are separated by 9 nucleotidesHMPREF1058_RS21430 and HMPREF1058_RS14390 are separated by 102 nucleotides HMPREF1058_RS14410: HMPREF1058_RS14410 - oxaloacetate decarboxylase, at 1,210,673 to 1,212,535 _RS14410 HMPREF1058_RS14405: HMPREF1058_RS14405 - OadG family protein, at 1,212,566 to 1,212,817 _RS14405 HMPREF1058_RS14400: HMPREF1058_RS14400 - nitroreductase family protein, at 1,213,085 to 1,213,585 _RS14400 HMPREF1058_RS14395: HMPREF1058_RS14395 - HAD family hydrolase, at 1,213,648 to 1,214,301 _RS14395 HMPREF1058_RS21430: HMPREF1058_RS21430 - 6-phosphofructokinase, at 1,214,311 to 1,214,436 _RS21430 HMPREF1058_RS14390: HMPREF1058_RS14390 - DoxX family protein, at 1,214,539 to 1,214,979 _RS14390 Position (kb) 1213 1214Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1212.196 kb on + strand, within HMPREF1058_RS14410at 1212.224 kb on - strand, within HMPREF1058_RS14410at 1212.226 kb on - strand, within HMPREF1058_RS14410at 1212.226 kb on - strand, within HMPREF1058_RS14410at 1212.293 kb on - strand, within HMPREF1058_RS14410at 1212.461 kb on + strandat 1212.474 kb on + strandat 1212.474 kb on + strandat 1212.475 kb on - strandat 1212.475 kb on - strandat 1212.496 kb on + strandat 1212.570 kb on - strandat 1212.598 kb on + strand, within HMPREF1058_RS14405at 1212.718 kb on + strand, within HMPREF1058_RS14405at 1212.722 kb on - strand, within HMPREF1058_RS14405at 1212.727 kb on - strand, within HMPREF1058_RS14405at 1212.738 kb on + strand, within HMPREF1058_RS14405at 1212.738 kb on + strand, within HMPREF1058_RS14405at 1212.738 kb on + strand, within HMPREF1058_RS14405at 1212.806 kb on + strandat 1212.837 kb on + strandat 1212.840 kb on - strandat 1212.846 kb on + strandat 1212.855 kb on - strandat 1213.012 kb on + strandat 1213.222 kb on + strand, within HMPREF1058_RS14400at 1213.285 kb on + strand, within HMPREF1058_RS14400at 1213.399 kb on - strand, within HMPREF1058_RS14400at 1213.502 kb on - strand, within HMPREF1058_RS14400at 1213.540 kb on - strandat 1213.568 kb on + strandat 1213.586 kb on - strandat 1213.592 kb on + strandat 1213.596 kb on - strandat 1213.598 kb on + strandat 1213.599 kb on - strandat 1213.599 kb on - strandat 1213.647 kb on + strandat 1213.730 kb on + strand, within HMPREF1058_RS14395at 1213.735 kb on + strand, within HMPREF1058_RS14395at 1213.735 kb on + strand, within HMPREF1058_RS14395at 1213.736 kb on - strand, within HMPREF1058_RS14395at 1213.749 kb on + strand, within HMPREF1058_RS14395at 1213.750 kb on - strand, within HMPREF1058_RS14395at 1213.833 kb on + strand, within HMPREF1058_RS14395at 1213.856 kb on + strand, within HMPREF1058_RS14395at 1213.876 kb on + strand, within HMPREF1058_RS14395at 1213.879 kb on + strand, within HMPREF1058_RS14395at 1213.880 kb on - strand, within HMPREF1058_RS14395at 1213.880 kb on - strand, within HMPREF1058_RS14395at 1213.931 kb on + strand, within HMPREF1058_RS14395at 1213.980 kb on + strand, within HMPREF1058_RS14395at 1213.980 kb on + strand, within HMPREF1058_RS14395at 1214.045 kb on + strand, within HMPREF1058_RS14395at 1214.046 kb on - strand, within HMPREF1058_RS14395at 1214.134 kb on - strand, within HMPREF1058_RS14395at 1214.135 kb on + strand, within HMPREF1058_RS14395at 1214.141 kb on - strand, within HMPREF1058_RS14395at 1214.154 kb on + strand, within HMPREF1058_RS14395at 1214.155 kb on - strand, within HMPREF1058_RS14395at 1214.160 kb on - strand, within HMPREF1058_RS14395at 1214.160 kb on - strand, within HMPREF1058_RS14395at 1214.160 kb on - strand, within HMPREF1058_RS14395at 1214.189 kb on + strand, within HMPREF1058_RS14395at 1214.198 kb on + strand, within HMPREF1058_RS14395at 1214.198 kb on + strand, within HMPREF1058_RS14395at 1214.198 kb on + strand, within HMPREF1058_RS14395at 1214.198 kb on + strand, within HMPREF1058_RS14395at 1214.199 kb on - strand, within HMPREF1058_RS14395at 1214.262 kb on - strandat 1214.316 kb on + strandat 1214.391 kb on + strand, within HMPREF1058_RS21430at 1214.392 kb on - strand, within HMPREF1058_RS21430at 1214.394 kb on - strand, within HMPREF1058_RS21430at 1214.394 kb on - strand, within HMPREF1058_RS21430at 1214.396 kb on - strand, within HMPREF1058_RS21430at 1214.505 kb on - strandat 1214.514 kb on - strandat 1214.562 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 5 mg/ml (C)
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1,212,196 + HMPREF1058_RS14410 0.82 -0.0
1,212,224 - HMPREF1058_RS14410 0.83 -0.7
1,212,226 - HMPREF1058_RS14410 0.83 -0.6
1,212,226 - HMPREF1058_RS14410 0.83 +0.0
1,212,293 - HMPREF1058_RS14410 0.87 -0.6
1,212,461 + +0.4
1,212,474 + -3.0
1,212,474 + -0.8
1,212,475 - -0.4
1,212,475 - -0.7
1,212,496 + +0.1
1,212,570 - -1.1
1,212,598 + HMPREF1058_RS14405 0.13 -0.5
1,212,718 + HMPREF1058_RS14405 0.60 -0.5
1,212,722 - HMPREF1058_RS14405 0.62 -0.2
1,212,727 - HMPREF1058_RS14405 0.64 -0.2
1,212,738 + HMPREF1058_RS14405 0.68 -1.9
1,212,738 + HMPREF1058_RS14405 0.68 -0.4
1,212,738 + HMPREF1058_RS14405 0.68 +0.1
1,212,806 + +0.9
1,212,837 + +0.8
1,212,840 - +0.2
1,212,846 + +1.6
1,212,855 - +0.5
1,213,012 + -0.8
1,213,222 + HMPREF1058_RS14400 0.27 +0.2
1,213,285 + HMPREF1058_RS14400 0.40 -1.1
1,213,399 - HMPREF1058_RS14400 0.63 +1.0
1,213,502 - HMPREF1058_RS14400 0.83 +2.5
1,213,540 - +0.0
1,213,568 + +2.1
1,213,586 - +0.4
1,213,592 + +0.4
1,213,596 - -0.9
1,213,598 + +0.6
1,213,599 - +0.4
1,213,599 - -0.7
1,213,647 + +0.2
1,213,730 + HMPREF1058_RS14395 0.13 -1.0
1,213,735 + HMPREF1058_RS14395 0.13 -0.7
1,213,735 + HMPREF1058_RS14395 0.13 +0.6
1,213,736 - HMPREF1058_RS14395 0.13 -0.3
1,213,749 + HMPREF1058_RS14395 0.15 +0.6
1,213,750 - HMPREF1058_RS14395 0.16 +0.3
1,213,833 + HMPREF1058_RS14395 0.28 +0.4
1,213,856 + HMPREF1058_RS14395 0.32 -0.1
1,213,876 + HMPREF1058_RS14395 0.35 +3.0
1,213,879 + HMPREF1058_RS14395 0.35 +0.6
1,213,880 - HMPREF1058_RS14395 0.35 +0.2
1,213,880 - HMPREF1058_RS14395 0.35 +0.1
1,213,931 + HMPREF1058_RS14395 0.43 -0.2
1,213,980 + HMPREF1058_RS14395 0.51 +0.8
1,213,980 + HMPREF1058_RS14395 0.51 +0.1
1,214,045 + HMPREF1058_RS14395 0.61 +1.6
1,214,046 - HMPREF1058_RS14395 0.61 -0.2
1,214,134 - HMPREF1058_RS14395 0.74 +0.3
1,214,135 + HMPREF1058_RS14395 0.74 +1.3
1,214,141 - HMPREF1058_RS14395 0.75 +0.4
1,214,154 + HMPREF1058_RS14395 0.77 -0.1
1,214,155 - HMPREF1058_RS14395 0.78 +0.0
1,214,160 - HMPREF1058_RS14395 0.78 +0.3
1,214,160 - HMPREF1058_RS14395 0.78 +0.4
1,214,160 - HMPREF1058_RS14395 0.78 -0.3
1,214,189 + HMPREF1058_RS14395 0.83 -0.2
1,214,198 + HMPREF1058_RS14395 0.84 +1.5
1,214,198 + HMPREF1058_RS14395 0.84 +0.8
1,214,198 + HMPREF1058_RS14395 0.84 +0.4
1,214,198 + HMPREF1058_RS14395 0.84 +0.4
1,214,199 - HMPREF1058_RS14395 0.84 -1.4
1,214,262 - +0.3
1,214,316 + +0.2
1,214,391 + HMPREF1058_RS21430 0.63 +0.6
1,214,392 - HMPREF1058_RS21430 0.64 +0.6
1,214,394 - HMPREF1058_RS21430 0.66 -0.2
1,214,394 - HMPREF1058_RS21430 0.66 +1.1
1,214,396 - HMPREF1058_RS21430 0.67 -0.2
1,214,505 - -0.4
1,214,514 - +2.4
1,214,562 - +0.1

Or see this region's nucleotide sequence