Experiment: D-Glucose 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10000 and HMPREF1058_RS09995 are separated by 102 nucleotides HMPREF1058_RS09995 and HMPREF1058_RS09990 are separated by 11 nucleotides
HMPREF1058_RS10000: HMPREF1058_RS10000 - 30S ribosomal protein S15, at 749,228 to 749,497
_RS10000
HMPREF1058_RS09995: HMPREF1058_RS09995 - S-ribosylhomocysteine lyase, at 749,600 to 750,085
_RS09995
HMPREF1058_RS09990: HMPREF1058_RS09990 - 5'-methylthioadenosine/adenosylhomocysteine nucleosidase, at 750,097 to 750,792
_RS09990
Position (kb) 750
751 Strain fitness (log2 ratio) -1
0
1
2
3 at 749.560 kb on - strand at 749.572 kb on + strand at 749.611 kb on + strand at 749.616 kb on + strand at 749.617 kb on - strand at 749.619 kb on + strand at 749.620 kb on - strand at 749.620 kb on - strand at 749.620 kb on - strand at 749.706 kb on + strand, within HMPREF1058_RS09995 at 749.795 kb on - strand, within HMPREF1058_RS09995 at 749.830 kb on - strand, within HMPREF1058_RS09995 at 749.862 kb on + strand, within HMPREF1058_RS09995 at 749.884 kb on + strand, within HMPREF1058_RS09995 at 749.885 kb on - strand, within HMPREF1058_RS09995 at 749.885 kb on - strand, within HMPREF1058_RS09995 at 749.921 kb on + strand, within HMPREF1058_RS09995 at 749.921 kb on + strand, within HMPREF1058_RS09995 at 749.921 kb on + strand, within HMPREF1058_RS09995 at 749.927 kb on - strand, within HMPREF1058_RS09995 at 750.030 kb on + strand, within HMPREF1058_RS09995 at 750.030 kb on + strand, within HMPREF1058_RS09995 at 750.030 kb on + strand, within HMPREF1058_RS09995 at 750.031 kb on - strand, within HMPREF1058_RS09995 at 750.031 kb on - strand, within HMPREF1058_RS09995 at 750.031 kb on - strand, within HMPREF1058_RS09995 at 750.035 kb on - strand, within HMPREF1058_RS09995 at 750.088 kb on + strand at 750.100 kb on + strand at 750.179 kb on + strand, within HMPREF1058_RS09990 at 750.179 kb on + strand, within HMPREF1058_RS09990 at 750.242 kb on - strand, within HMPREF1058_RS09990 at 750.246 kb on + strand, within HMPREF1058_RS09990 at 750.248 kb on + strand, within HMPREF1058_RS09990 at 750.248 kb on + strand, within HMPREF1058_RS09990 at 750.248 kb on + strand, within HMPREF1058_RS09990 at 750.250 kb on + strand, within HMPREF1058_RS09990 at 750.250 kb on + strand, within HMPREF1058_RS09990 at 750.250 kb on + strand, within HMPREF1058_RS09990 at 750.250 kb on + strand, within HMPREF1058_RS09990 at 750.250 kb on + strand, within HMPREF1058_RS09990 at 750.251 kb on - strand, within HMPREF1058_RS09990 at 750.252 kb on + strand, within HMPREF1058_RS09990 at 750.252 kb on + strand, within HMPREF1058_RS09990 at 750.253 kb on - strand, within HMPREF1058_RS09990 at 750.254 kb on + strand, within HMPREF1058_RS09990 at 750.289 kb on + strand, within HMPREF1058_RS09990 at 750.460 kb on + strand, within HMPREF1058_RS09990 at 750.461 kb on - strand, within HMPREF1058_RS09990 at 750.470 kb on + strand, within HMPREF1058_RS09990 at 750.474 kb on + strand, within HMPREF1058_RS09990 at 750.475 kb on - strand, within HMPREF1058_RS09990 at 750.493 kb on + strand, within HMPREF1058_RS09990 at 750.493 kb on + strand, within HMPREF1058_RS09990 at 750.494 kb on - strand, within HMPREF1058_RS09990 at 750.494 kb on - strand, within HMPREF1058_RS09990 at 750.505 kb on + strand, within HMPREF1058_RS09990 at 750.505 kb on + strand, within HMPREF1058_RS09990 at 750.506 kb on - strand, within HMPREF1058_RS09990 at 750.639 kb on + strand, within HMPREF1058_RS09990 at 750.669 kb on + strand, within HMPREF1058_RS09990 at 750.775 kb on + strand at 750.776 kb on - strand at 750.776 kb on - strand at 750.803 kb on + strand at 750.807 kb on + strand at 750.838 kb on + strand at 750.838 kb on + strand at 750.838 kb on + strand at 750.839 kb on - strand at 750.839 kb on - strand at 750.839 kb on - strand at 750.877 kb on + strand at 750.921 kb on + strand at 750.942 kb on - strand at 750.942 kb on - strand at 750.945 kb on + strand at 751.052 kb on - strand at 751.084 kb on + strand at 751.127 kb on + strand at 751.128 kb on - strand at 751.186 kb on - strand at 751.400 kb on + strand at 751.400 kb on + strand at 751.677 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 5 mg/ml (C) remove 749,560 - +2.4 749,572 + -0.1 749,611 + -0.4 749,616 + +1.4 749,617 - +1.2 749,619 + +0.2 749,620 - +0.3 749,620 - +0.2 749,620 - -0.1 749,706 + HMPREF1058_RS09995 0.22 -0.5 749,795 - HMPREF1058_RS09995 0.40 -1.0 749,830 - HMPREF1058_RS09995 0.47 -0.4 749,862 + HMPREF1058_RS09995 0.54 -0.4 749,884 + HMPREF1058_RS09995 0.58 +2.2 749,885 - HMPREF1058_RS09995 0.59 +0.5 749,885 - HMPREF1058_RS09995 0.59 +1.0 749,921 + HMPREF1058_RS09995 0.66 +1.2 749,921 + HMPREF1058_RS09995 0.66 +0.5 749,921 + HMPREF1058_RS09995 0.66 +0.9 749,927 - HMPREF1058_RS09995 0.67 +0.7 750,030 + HMPREF1058_RS09995 0.88 -1.2 750,030 + HMPREF1058_RS09995 0.88 -1.4 750,030 + HMPREF1058_RS09995 0.88 +0.6 750,031 - HMPREF1058_RS09995 0.89 +0.4 750,031 - HMPREF1058_RS09995 0.89 +0.9 750,031 - HMPREF1058_RS09995 0.89 -0.0 750,035 - HMPREF1058_RS09995 0.90 +0.9 750,088 + +0.6 750,100 + +0.7 750,179 + HMPREF1058_RS09990 0.12 +2.4 750,179 + HMPREF1058_RS09990 0.12 +1.3 750,242 - HMPREF1058_RS09990 0.21 +1.3 750,246 + HMPREF1058_RS09990 0.21 +0.2 750,248 + HMPREF1058_RS09990 0.22 -0.0 750,248 + HMPREF1058_RS09990 0.22 +1.0 750,248 + HMPREF1058_RS09990 0.22 +1.0 750,250 + HMPREF1058_RS09990 0.22 +1.4 750,250 + HMPREF1058_RS09990 0.22 +0.7 750,250 + HMPREF1058_RS09990 0.22 +1.4 750,250 + HMPREF1058_RS09990 0.22 +3.7 750,250 + HMPREF1058_RS09990 0.22 +1.8 750,251 - HMPREF1058_RS09990 0.22 -0.4 750,252 + HMPREF1058_RS09990 0.22 +1.1 750,252 + HMPREF1058_RS09990 0.22 +3.4 750,253 - HMPREF1058_RS09990 0.22 +0.1 750,254 + HMPREF1058_RS09990 0.23 -1.0 750,289 + HMPREF1058_RS09990 0.28 +1.8 750,460 + HMPREF1058_RS09990 0.52 +1.0 750,461 - HMPREF1058_RS09990 0.52 +1.5 750,470 + HMPREF1058_RS09990 0.54 +0.5 750,474 + HMPREF1058_RS09990 0.54 +1.7 750,475 - HMPREF1058_RS09990 0.54 +1.0 750,493 + HMPREF1058_RS09990 0.57 +0.4 750,493 + HMPREF1058_RS09990 0.57 +1.7 750,494 - HMPREF1058_RS09990 0.57 +2.0 750,494 - HMPREF1058_RS09990 0.57 +1.8 750,505 + HMPREF1058_RS09990 0.59 +1.2 750,505 + HMPREF1058_RS09990 0.59 +1.4 750,506 - HMPREF1058_RS09990 0.59 +2.0 750,639 + HMPREF1058_RS09990 0.78 +1.4 750,669 + HMPREF1058_RS09990 0.82 -0.4 750,775 + +1.3 750,776 - +2.3 750,776 - +1.5 750,803 + +1.7 750,807 + +2.5 750,838 + +0.5 750,838 + +0.3 750,838 + -0.3 750,839 - +0.3 750,839 - -0.0 750,839 - -0.1 750,877 + -0.8 750,921 + +0.3 750,942 - -0.7 750,942 - +0.6 750,945 + +1.1 751,052 - -0.1 751,084 + +0.3 751,127 + -0.3 751,128 - -1.6 751,186 - +0.5 751,400 + -0.1 751,400 + -0.2 751,677 - -0.6
Or see this region's nucleotide sequence