Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04600

Experiment: D-Glucose 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose 5 mg/ml (C)
1,999	+		HMPREF1058_RS21515	0.52	+0.5
2,024	-		HMPREF1058_RS21515	0.55	+0.0
2,033	+		HMPREF1058_RS21515	0.56	-1.3
2,034	-		HMPREF1058_RS21515	0.56	-0.8
2,107	+		HMPREF1058_RS21515	0.66	-2.4
2,161	+		HMPREF1058_RS21515	0.72	+0.2
2,191	-		HMPREF1058_RS21515	0.76	-2.0
2,336	-				+1.1
2,394	+				-0.2
2,529	+		HMPREF1058_RS04605	0.34	-0.2
2,703	+		HMPREF1058_RS04605	0.69	+0.3
2,762	+		HMPREF1058_RS04605	0.81	+0.4
2,815	+				-1.8
2,887	+				-2.2
2,887	+				-0.0
2,891	+				-1.1
2,932	+				+0.1
2,960	+				-0.2
3,192	+		HMPREF1058_RS04600	0.51	-0.7
3,317	+		HMPREF1058_RS04600	0.79	+1.3
3,401	+				+0.8
3,434	+				-2.0
3,933	+		HMPREF1058_RS04590	0.16	+0.5
4,048	+		HMPREF1058_RS04590	0.34	-0.9
4,050	+		HMPREF1058_RS04590	0.34	+0.4
4,050	+		HMPREF1058_RS04590	0.34	+0.2
4,050	+		HMPREF1058_RS04590	0.34	+0.8