Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01995

Experiment: D-Glucose 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose 5 mg/ml (C)
1,796	+		HMPREF1058_RS02010	0.67	-1.7
1,797	-		HMPREF1058_RS02010	0.68	-0.9
1,798	+		HMPREF1058_RS02010	0.68	-0.7
1,798	+		HMPREF1058_RS02010	0.68	-0.2
1,799	-		HMPREF1058_RS02010	0.69	-1.0
1,809	-		HMPREF1058_RS02010	0.74	-0.3
1,917	-				+0.9
1,961	-				+1.1
2,072	+		HMPREF1058_RS02005	0.29	-0.2
2,119	+		HMPREF1058_RS02005	0.39	+0.5
2,119	+		HMPREF1058_RS02005	0.39	+0.2
2,258	-		HMPREF1058_RS02005	0.71	+0.3
2,325	+		HMPREF1058_RS02005	0.87	+0.0
2,325	+		HMPREF1058_RS02005	0.87	-0.0
2,330	+		HMPREF1058_RS02005	0.88	+0.0
2,331	-		HMPREF1058_RS02005	0.88	+0.9
2,331	-		HMPREF1058_RS02005	0.88	+1.1
2,421	-				-0.3
2,475	+				+1.6
2,601	+		HMPREF1058_RS02000	0.38	+1.2
2,602	-		HMPREF1058_RS02000	0.39	+0.7
2,605	+		HMPREF1058_RS02000	0.40	+1.0
2,957	+		HMPREF1058_RS01995	0.46	+0.5
2,979	+		HMPREF1058_RS01995	0.51	+0.9
2,983	+		HMPREF1058_RS01995	0.52	+1.9
2,985	+		HMPREF1058_RS01995	0.53	+0.9
3,078	+		HMPREF1058_RS01995	0.76	+0.7
3,135	+		HMPREF1058_RS01995	0.90	-0.7
3,253	-				+2.5
3,281	-				-0.6