Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17400 and HMPREF1058_RS17395 are separated by 108 nucleotides HMPREF1058_RS17395 and HMPREF1058_RS21415 overlap by 4 nucleotides HMPREF1058_RS21415 and HMPREF1058_RS17390 are separated by 40 nucleotides HMPREF1058_RS17390 and HMPREF1058_RS17385 are separated by 248 nucleotides HMPREF1058_RS17385 and HMPREF1058_RS17380 are separated by 150 nucleotides
HMPREF1058_RS17400: HMPREF1058_RS17400 - tyrosine-protein kinase, at 452,443 to 454,854
_RS17400
HMPREF1058_RS17395: HMPREF1058_RS17395 - N-acetylmuramoyl-L-alanine amidase, at 454,963 to 455,412
_RS17395
HMPREF1058_RS21415: HMPREF1058_RS21415 - smalltalk protein, at 455,409 to 455,510
_RS21415
HMPREF1058_RS17390: HMPREF1058_RS17390 - HU family DNA-binding protein, at 455,551 to 455,979
_RS17390
HMPREF1058_RS17385: HMPREF1058_RS17385 - DUF4248 domain-containing protein, at 456,228 to 456,458
_RS17385
HMPREF1058_RS17380: HMPREF1058_RS17380 - DUF3987 domain-containing protein, at 456,609 to 458,987
_RS17380
Position (kb) 455
456 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 454.551 kb on + strand, within HMPREF1058_RS17400 at 454.627 kb on + strand at 454.627 kb on + strand at 454.627 kb on + strand at 454.627 kb on + strand at 454.628 kb on - strand at 454.645 kb on + strand at 454.710 kb on - strand at 454.710 kb on - strand at 454.714 kb on - strand at 454.778 kb on - strand at 455.060 kb on - strand, within HMPREF1058_RS17395 at 455.192 kb on + strand, within HMPREF1058_RS17395 at 455.217 kb on + strand, within HMPREF1058_RS17395 at 455.501 kb on + strand at 455.553 kb on - strand at 455.687 kb on + strand, within HMPREF1058_RS17390 at 455.687 kb on + strand, within HMPREF1058_RS17390 at 455.688 kb on - strand, within HMPREF1058_RS17390 at 455.688 kb on - strand, within HMPREF1058_RS17390 at 455.688 kb on - strand, within HMPREF1058_RS17390 at 455.756 kb on - strand, within HMPREF1058_RS17390 at 455.879 kb on - strand, within HMPREF1058_RS17390 at 456.265 kb on - strand, within HMPREF1058_RS17385 at 456.290 kb on - strand, within HMPREF1058_RS17385 at 456.290 kb on - strand, within HMPREF1058_RS17385 at 456.290 kb on - strand, within HMPREF1058_RS17385 at 456.292 kb on - strand, within HMPREF1058_RS17385 at 456.433 kb on + strand, within HMPREF1058_RS17385 at 456.456 kb on + strand at 456.463 kb on + strand at 456.463 kb on + strand at 456.587 kb on + strand at 456.656 kb on + strand at 456.656 kb on + strand at 456.657 kb on - strand at 456.657 kb on - strand at 456.704 kb on - strand at 456.842 kb on + strand at 456.944 kb on + strand, within HMPREF1058_RS17380 at 456.945 kb on - strand, within HMPREF1058_RS17380
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 454,551 + HMPREF1058_RS17400 0.87 +0.5 454,627 + +0.5 454,627 + +1.8 454,627 + +2.1 454,627 + +0.2 454,628 - +0.6 454,645 + +0.6 454,710 - +0.0 454,710 - -0.9 454,714 - -0.7 454,778 - -0.4 455,060 - HMPREF1058_RS17395 0.22 -0.4 455,192 + HMPREF1058_RS17395 0.51 -1.6 455,217 + HMPREF1058_RS17395 0.56 -0.0 455,501 + -1.4 455,553 - -1.4 455,687 + HMPREF1058_RS17390 0.32 +0.0 455,687 + HMPREF1058_RS17390 0.32 +0.0 455,688 - HMPREF1058_RS17390 0.32 +0.6 455,688 - HMPREF1058_RS17390 0.32 -3.1 455,688 - HMPREF1058_RS17390 0.32 -1.8 455,756 - HMPREF1058_RS17390 0.48 -0.8 455,879 - HMPREF1058_RS17390 0.76 -1.6 456,265 - HMPREF1058_RS17385 0.16 +0.9 456,290 - HMPREF1058_RS17385 0.27 -1.0 456,290 - HMPREF1058_RS17385 0.27 -0.7 456,290 - HMPREF1058_RS17385 0.27 -0.4 456,292 - HMPREF1058_RS17385 0.28 -1.8 456,433 + HMPREF1058_RS17385 0.89 +0.2 456,456 + +0.1 456,463 + +0.8 456,463 + -1.8 456,587 + -0.8 456,656 + -0.5 456,656 + -0.1 456,657 - -0.1 456,657 - -1.2 456,704 - -1.4 456,842 + -2.3 456,944 + HMPREF1058_RS17380 0.14 -0.8 456,945 - HMPREF1058_RS17380 0.14 +0.1
Or see this region's nucleotide sequence