Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18140

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18145 and HMPREF1058_RS18140 are separated by 270 nucleotidesHMPREF1058_RS18140 and HMPREF1058_RS18135 overlap by 8 nucleotides HMPREF1058_RS18145: HMPREF1058_RS18145 - Fic family protein, at 247,068 to 247,829 _RS18145 HMPREF1058_RS18140: HMPREF1058_RS18140 - hypothetical protein, at 248,100 to 249,236 _RS18140 HMPREF1058_RS18135: HMPREF1058_RS18135 - hypothetical protein, at 249,229 to 249,939 _RS18135 Position (kb) 248 249 250Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 247.202 kb on + strand, within HMPREF1058_RS18145at 247.220 kb on + strand, within HMPREF1058_RS18145at 247.231 kb on + strand, within HMPREF1058_RS18145at 247.250 kb on - strand, within HMPREF1058_RS18145at 247.265 kb on + strand, within HMPREF1058_RS18145at 247.269 kb on - strand, within HMPREF1058_RS18145at 247.322 kb on + strand, within HMPREF1058_RS18145at 247.325 kb on + strand, within HMPREF1058_RS18145at 247.329 kb on + strand, within HMPREF1058_RS18145at 247.329 kb on + strand, within HMPREF1058_RS18145at 247.329 kb on + strand, within HMPREF1058_RS18145at 247.332 kb on - strand, within HMPREF1058_RS18145at 247.341 kb on - strand, within HMPREF1058_RS18145at 247.357 kb on + strand, within HMPREF1058_RS18145at 247.357 kb on + strand, within HMPREF1058_RS18145at 247.358 kb on - strand, within HMPREF1058_RS18145at 247.387 kb on + strand, within HMPREF1058_RS18145at 247.387 kb on + strand, within HMPREF1058_RS18145at 247.466 kb on + strand, within HMPREF1058_RS18145at 247.467 kb on - strand, within HMPREF1058_RS18145at 247.467 kb on - strand, within HMPREF1058_RS18145at 247.473 kb on - strand, within HMPREF1058_RS18145at 247.543 kb on + strand, within HMPREF1058_RS18145at 247.543 kb on + strand, within HMPREF1058_RS18145at 247.579 kb on + strand, within HMPREF1058_RS18145at 247.579 kb on + strand, within HMPREF1058_RS18145at 247.610 kb on + strand, within HMPREF1058_RS18145at 247.612 kb on + strand, within HMPREF1058_RS18145at 247.613 kb on - strand, within HMPREF1058_RS18145at 247.628 kb on + strand, within HMPREF1058_RS18145at 247.653 kb on + strand, within HMPREF1058_RS18145at 247.676 kb on + strand, within HMPREF1058_RS18145at 247.676 kb on + strand, within HMPREF1058_RS18145at 247.677 kb on - strand, within HMPREF1058_RS18145at 247.679 kb on + strand, within HMPREF1058_RS18145at 247.680 kb on - strand, within HMPREF1058_RS18145at 247.698 kb on - strand, within HMPREF1058_RS18145at 247.719 kb on + strand, within HMPREF1058_RS18145at 247.743 kb on - strand, within HMPREF1058_RS18145at 247.837 kb on + strandat 247.888 kb on + strandat 247.917 kb on - strandat 247.917 kb on - strandat 247.917 kb on - strandat 247.946 kb on - strandat 247.983 kb on + strandat 247.984 kb on - strandat 248.013 kb on + strandat 248.133 kb on - strandat 248.152 kb on + strandat 248.257 kb on + strand, within HMPREF1058_RS18140at 248.268 kb on + strand, within HMPREF1058_RS18140at 248.269 kb on - strand, within HMPREF1058_RS18140at 248.275 kb on + strand, within HMPREF1058_RS18140at 248.283 kb on - strand, within HMPREF1058_RS18140at 248.297 kb on + strand, within HMPREF1058_RS18140at 248.297 kb on + strand, within HMPREF1058_RS18140at 248.298 kb on - strand, within HMPREF1058_RS18140at 248.386 kb on + strand, within HMPREF1058_RS18140at 248.414 kb on - strand, within HMPREF1058_RS18140at 248.433 kb on - strand, within HMPREF1058_RS18140at 248.440 kb on + strand, within HMPREF1058_RS18140at 248.441 kb on - strand, within HMPREF1058_RS18140at 248.467 kb on + strand, within HMPREF1058_RS18140at 248.468 kb on - strand, within HMPREF1058_RS18140at 248.468 kb on - strand, within HMPREF1058_RS18140at 248.473 kb on - strand, within HMPREF1058_RS18140at 248.489 kb on + strand, within HMPREF1058_RS18140at 248.520 kb on + strand, within HMPREF1058_RS18140at 248.521 kb on - strand, within HMPREF1058_RS18140at 248.592 kb on - strand, within HMPREF1058_RS18140at 248.592 kb on - strand, within HMPREF1058_RS18140at 248.594 kb on - strand, within HMPREF1058_RS18140at 248.594 kb on - strand, within HMPREF1058_RS18140at 248.607 kb on + strand, within HMPREF1058_RS18140at 248.648 kb on + strand, within HMPREF1058_RS18140at 248.648 kb on + strand, within HMPREF1058_RS18140at 248.648 kb on + strand, within HMPREF1058_RS18140at 248.649 kb on - strand, within HMPREF1058_RS18140at 248.662 kb on - strand, within HMPREF1058_RS18140at 248.673 kb on - strand, within HMPREF1058_RS18140at 248.693 kb on + strand, within HMPREF1058_RS18140at 248.737 kb on - strand, within HMPREF1058_RS18140at 248.801 kb on - strand, within HMPREF1058_RS18140at 248.803 kb on + strand, within HMPREF1058_RS18140at 248.803 kb on + strand, within HMPREF1058_RS18140at 248.804 kb on - strand, within HMPREF1058_RS18140at 248.834 kb on - strand, within HMPREF1058_RS18140at 248.846 kb on + strand, within HMPREF1058_RS18140at 248.847 kb on - strand, within HMPREF1058_RS18140at 248.848 kb on + strand, within HMPREF1058_RS18140at 248.898 kb on - strand, within HMPREF1058_RS18140at 248.922 kb on - strand, within HMPREF1058_RS18140at 248.930 kb on + strand, within HMPREF1058_RS18140at 248.931 kb on - strand, within HMPREF1058_RS18140at 248.983 kb on + strand, within HMPREF1058_RS18140at 248.984 kb on - strand, within HMPREF1058_RS18140at 248.990 kb on + strand, within HMPREF1058_RS18140at 249.024 kb on - strand, within HMPREF1058_RS18140at 249.029 kb on + strand, within HMPREF1058_RS18140at 249.030 kb on - strand, within HMPREF1058_RS18140at 249.051 kb on - strand, within HMPREF1058_RS18140at 249.056 kb on + strand, within HMPREF1058_RS18140at 249.068 kb on - strand, within HMPREF1058_RS18140at 249.168 kb on + strandat 249.168 kb on + strandat 249.170 kb on + strandat 249.187 kb on + strandat 249.213 kb on - strandat 249.239 kb on + strandat 249.243 kb on + strandat 249.244 kb on - strandat 249.264 kb on - strandat 249.275 kb on - strandat 249.275 kb on - strandat 249.276 kb on + strandat 249.276 kb on + strandat 249.328 kb on + strand, within HMPREF1058_RS18135at 249.381 kb on + strand, within HMPREF1058_RS18135at 249.405 kb on - strand, within HMPREF1058_RS18135at 249.413 kb on + strand, within HMPREF1058_RS18135at 249.417 kb on + strand, within HMPREF1058_RS18135at 249.429 kb on - strand, within HMPREF1058_RS18135at 249.469 kb on + strand, within HMPREF1058_RS18135at 249.486 kb on + strand, within HMPREF1058_RS18135at 249.497 kb on + strand, within HMPREF1058_RS18135at 249.500 kb on + strand, within HMPREF1058_RS18135at 249.555 kb on + strand, within HMPREF1058_RS18135at 249.576 kb on - strand, within HMPREF1058_RS18135at 249.601 kb on + strandat 249.602 kb on - strand, within HMPREF1058_RS18135at 249.605 kb on - strand, within HMPREF1058_RS18135at 249.619 kb on + strand, within HMPREF1058_RS18135at 249.624 kb on + strand, within HMPREF1058_RS18135at 249.641 kb on + strand, within HMPREF1058_RS18135at 249.684 kb on + strandat 249.685 kb on - strand, within HMPREF1058_RS18135at 249.715 kb on + strand, within HMPREF1058_RS18135at 249.796 kb on - strand, within HMPREF1058_RS18135at 249.796 kb on - strand, within HMPREF1058_RS18135at 249.821 kb on - strand, within HMPREF1058_RS18135at 249.838 kb on + strand, within HMPREF1058_RS18135at 249.842 kb on + strand, within HMPREF1058_RS18135at 249.852 kb on - strand, within HMPREF1058_RS18135at 249.856 kb on + strand, within HMPREF1058_RS18135at 249.880 kb on + strandat 249.880 kb on + strandat 249.881 kb on - strandat 249.881 kb on - strandat 249.883 kb on - strandat 249.883 kb on - strandat 249.885 kb on - strandat 249.885 kb on - strandat 249.885 kb on - strandat 249.917 kb on + strandat 249.919 kb on + strandat 249.944 kb on + strandat 249.999 kb on - strandat 250.010 kb on - strandat 250.033 kb on + strandat 250.039 kb on - strandat 250.039 kb on - strandat 250.042 kb on + strandat 250.042 kb on + strandat 250.042 kb on + strandat 250.078 kb on - strandat 250.161 kb on - strandat 250.196 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
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247,202 + HMPREF1058_RS18145 0.18 -0.5
247,220 + HMPREF1058_RS18145 0.20 +0.4
247,231 + HMPREF1058_RS18145 0.21 -1.3
247,250 - HMPREF1058_RS18145 0.24 -0.2
247,265 + HMPREF1058_RS18145 0.26 +0.2
247,269 - HMPREF1058_RS18145 0.26 +0.2
247,322 + HMPREF1058_RS18145 0.33 +0.1
247,325 + HMPREF1058_RS18145 0.34 -0.3
247,329 + HMPREF1058_RS18145 0.34 +0.3
247,329 + HMPREF1058_RS18145 0.34 -2.4
247,329 + HMPREF1058_RS18145 0.34 +1.1
247,332 - HMPREF1058_RS18145 0.35 +0.2
247,341 - HMPREF1058_RS18145 0.36 -0.3
247,357 + HMPREF1058_RS18145 0.38 +0.8
247,357 + HMPREF1058_RS18145 0.38 +0.4
247,358 - HMPREF1058_RS18145 0.38 -0.1
247,387 + HMPREF1058_RS18145 0.42 +0.7
247,387 + HMPREF1058_RS18145 0.42 +0.3
247,466 + HMPREF1058_RS18145 0.52 -0.5
247,467 - HMPREF1058_RS18145 0.52 -1.2
247,467 - HMPREF1058_RS18145 0.52 -0.2
247,473 - HMPREF1058_RS18145 0.53 -0.9
247,543 + HMPREF1058_RS18145 0.62 +0.1
247,543 + HMPREF1058_RS18145 0.62 -1.2
247,579 + HMPREF1058_RS18145 0.67 +0.4
247,579 + HMPREF1058_RS18145 0.67 +0.3
247,610 + HMPREF1058_RS18145 0.71 -0.4
247,612 + HMPREF1058_RS18145 0.71 -1.8
247,613 - HMPREF1058_RS18145 0.72 +0.2
247,628 + HMPREF1058_RS18145 0.73 +0.5
247,653 + HMPREF1058_RS18145 0.77 -0.8
247,676 + HMPREF1058_RS18145 0.80 -1.0
247,676 + HMPREF1058_RS18145 0.80 +0.1
247,677 - HMPREF1058_RS18145 0.80 +0.7
247,679 + HMPREF1058_RS18145 0.80 +0.5
247,680 - HMPREF1058_RS18145 0.80 +0.4
247,698 - HMPREF1058_RS18145 0.83 -0.1
247,719 + HMPREF1058_RS18145 0.85 -0.2
247,743 - HMPREF1058_RS18145 0.89 +0.6
247,837 + +0.2
247,888 + +0.4
247,917 - +0.1
247,917 - -1.4
247,917 - +0.5
247,946 - +0.6
247,983 + +0.4
247,984 - -0.2
248,013 + -0.5
248,133 - -0.4
248,152 + +0.5
248,257 + HMPREF1058_RS18140 0.14 +0.5
248,268 + HMPREF1058_RS18140 0.15 -0.4
248,269 - HMPREF1058_RS18140 0.15 -2.9
248,275 + HMPREF1058_RS18140 0.15 +0.4
248,283 - HMPREF1058_RS18140 0.16 -0.9
248,297 + HMPREF1058_RS18140 0.17 +0.7
248,297 + HMPREF1058_RS18140 0.17 +1.0
248,298 - HMPREF1058_RS18140 0.17 +0.2
248,386 + HMPREF1058_RS18140 0.25 -0.1
248,414 - HMPREF1058_RS18140 0.28 -1.2
248,433 - HMPREF1058_RS18140 0.29 -0.6
248,440 + HMPREF1058_RS18140 0.30 +0.4
248,441 - HMPREF1058_RS18140 0.30 -0.0
248,467 + HMPREF1058_RS18140 0.32 +0.5
248,468 - HMPREF1058_RS18140 0.32 -1.0
248,468 - HMPREF1058_RS18140 0.32 -0.4
248,473 - HMPREF1058_RS18140 0.33 -1.4
248,489 + HMPREF1058_RS18140 0.34 +0.6
248,520 + HMPREF1058_RS18140 0.37 +1.1
248,521 - HMPREF1058_RS18140 0.37 -0.9
248,592 - HMPREF1058_RS18140 0.43 -0.9
248,592 - HMPREF1058_RS18140 0.43 -0.2
248,594 - HMPREF1058_RS18140 0.43 -0.5
248,594 - HMPREF1058_RS18140 0.43 -0.7
248,607 + HMPREF1058_RS18140 0.45 -0.7
248,648 + HMPREF1058_RS18140 0.48 -0.4
248,648 + HMPREF1058_RS18140 0.48 -0.5
248,648 + HMPREF1058_RS18140 0.48 -0.4
248,649 - HMPREF1058_RS18140 0.48 +1.9
248,662 - HMPREF1058_RS18140 0.49 -0.4
248,673 - HMPREF1058_RS18140 0.50 +1.1
248,693 + HMPREF1058_RS18140 0.52 -0.4
248,737 - HMPREF1058_RS18140 0.56 -0.7
248,801 - HMPREF1058_RS18140 0.62 -0.1
248,803 + HMPREF1058_RS18140 0.62 -0.2
248,803 + HMPREF1058_RS18140 0.62 +0.1
248,804 - HMPREF1058_RS18140 0.62 +0.7
248,834 - HMPREF1058_RS18140 0.65 +0.4
248,846 + HMPREF1058_RS18140 0.66 +0.8
248,847 - HMPREF1058_RS18140 0.66 -0.6
248,848 + HMPREF1058_RS18140 0.66 -1.2
248,898 - HMPREF1058_RS18140 0.70 -0.5
248,922 - HMPREF1058_RS18140 0.72 -1.6
248,930 + HMPREF1058_RS18140 0.73 +0.1
248,931 - HMPREF1058_RS18140 0.73 +1.0
248,983 + HMPREF1058_RS18140 0.78 -0.5
248,984 - HMPREF1058_RS18140 0.78 -1.3
248,990 + HMPREF1058_RS18140 0.78 -0.9
249,024 - HMPREF1058_RS18140 0.81 +0.3
249,029 + HMPREF1058_RS18140 0.82 +0.5
249,030 - HMPREF1058_RS18140 0.82 -2.1
249,051 - HMPREF1058_RS18140 0.84 -2.2
249,056 + HMPREF1058_RS18140 0.84 -1.7
249,068 - HMPREF1058_RS18140 0.85 -0.4
249,168 + +0.3
249,168 + -0.2
249,170 + -0.1
249,187 + +0.8
249,213 - +0.5
249,239 + -0.5
249,243 + -0.5
249,244 - -0.2
249,264 - -0.8
249,275 - +1.7
249,275 - +0.1
249,276 + -0.3
249,276 + -0.3
249,328 + HMPREF1058_RS18135 0.14 +0.0
249,381 + HMPREF1058_RS18135 0.21 +0.3
249,405 - HMPREF1058_RS18135 0.25 -2.6
249,413 + HMPREF1058_RS18135 0.26 +0.2
249,417 + HMPREF1058_RS18135 0.26 +0.3
249,429 - HMPREF1058_RS18135 0.28 -1.9
249,469 + HMPREF1058_RS18135 0.34 +0.1
249,486 + HMPREF1058_RS18135 0.36 -1.7
249,497 + HMPREF1058_RS18135 0.38 +0.9
249,500 + HMPREF1058_RS18135 0.38 +0.4
249,555 + HMPREF1058_RS18135 0.46 -1.2
249,576 - HMPREF1058_RS18135 0.49 -0.2
249,601 + -0.2
249,602 - HMPREF1058_RS18135 0.52 -1.4
249,605 - HMPREF1058_RS18135 0.53 -0.7
249,619 + HMPREF1058_RS18135 0.55 +0.5
249,624 + HMPREF1058_RS18135 0.56 -0.1
249,641 + HMPREF1058_RS18135 0.58 +0.3
249,684 + -2.3
249,685 - HMPREF1058_RS18135 0.64 -0.6
249,715 + HMPREF1058_RS18135 0.68 -1.6
249,796 - HMPREF1058_RS18135 0.80 +0.7
249,796 - HMPREF1058_RS18135 0.80 -0.4
249,821 - HMPREF1058_RS18135 0.83 +0.3
249,838 + HMPREF1058_RS18135 0.86 -0.9
249,842 + HMPREF1058_RS18135 0.86 -0.4
249,852 - HMPREF1058_RS18135 0.88 -1.5
249,856 + HMPREF1058_RS18135 0.88 -0.9
249,880 + -1.5
249,880 + -0.5
249,881 - -2.5
249,881 - +0.7
249,883 - -0.6
249,883 - +2.5
249,885 - +1.2
249,885 - -1.8
249,885 - +2.5
249,917 + -0.1
249,919 + -0.1
249,944 + +0.9
249,999 - -0.5
250,010 - +1.1
250,033 + +0.6
250,039 - -0.7
250,039 - -0.6
250,042 + -0.9
250,042 + -0.1
250,042 + +1.2
250,078 - -0.0
250,161 - -0.8
250,196 + +0.8

Or see this region's nucleotide sequence