Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17675 and HMPREF1058_RS17670 are separated by 287 nucleotides HMPREF1058_RS17670 and HMPREF1058_RS17665 overlap by 7 nucleotides HMPREF1058_RS17665 and HMPREF1058_RS20425 overlap by 56 nucleotides HMPREF1058_RS20425 and HMPREF1058_RS17660 are separated by 140 nucleotides HMPREF1058_RS17660 and HMPREF1058_RS17655 are separated by 70 nucleotides
HMPREF1058_RS17675: HMPREF1058_RS17675 - mechanosensitive ion channel, at 371,966 to 373,315
_RS17675
HMPREF1058_RS17670: HMPREF1058_RS17670 - hypothetical protein, at 373,603 to 373,806
_RS17670
HMPREF1058_RS17665: HMPREF1058_RS17665 - hypothetical protein, at 373,800 to 374,003
_RS17665
HMPREF1058_RS20425: HMPREF1058_RS20425 - left-handed beta-roll domain-containing protein, at 373,948 to 374,070
_RS20425
HMPREF1058_RS17660: HMPREF1058_RS17660 - tRNA-Arg, at 374,211 to 374,284
_RS17660
HMPREF1058_RS17655: HMPREF1058_RS17655 - AbgT family transporter, at 374,355 to 375,071
_RS17655
Position (kb) 373
374 Strain fitness (log2 ratio) -2
-1
0
1
2 at 372.728 kb on - strand, within HMPREF1058_RS17675 at 372.728 kb on - strand, within HMPREF1058_RS17675 at 372.749 kb on + strand, within HMPREF1058_RS17675 at 372.750 kb on - strand, within HMPREF1058_RS17675 at 372.796 kb on + strand, within HMPREF1058_RS17675 at 372.797 kb on - strand, within HMPREF1058_RS17675 at 372.914 kb on - strand, within HMPREF1058_RS17675 at 373.042 kb on + strand, within HMPREF1058_RS17675 at 373.043 kb on - strand, within HMPREF1058_RS17675 at 373.043 kb on - strand, within HMPREF1058_RS17675 at 373.087 kb on - strand, within HMPREF1058_RS17675 at 373.087 kb on - strand, within HMPREF1058_RS17675 at 373.120 kb on + strand, within HMPREF1058_RS17675 at 373.121 kb on - strand, within HMPREF1058_RS17675 at 373.154 kb on + strand, within HMPREF1058_RS17675 at 373.155 kb on - strand, within HMPREF1058_RS17675 at 373.159 kb on - strand, within HMPREF1058_RS17675 at 373.310 kb on - strand at 373.320 kb on - strand at 373.330 kb on + strand at 373.334 kb on + strand at 373.334 kb on + strand at 373.335 kb on - strand at 373.423 kb on - strand at 373.470 kb on + strand at 373.505 kb on - strand at 373.507 kb on - strand at 373.564 kb on - strand at 373.666 kb on - strand, within HMPREF1058_RS17670 at 373.688 kb on - strand, within HMPREF1058_RS17670 at 373.688 kb on - strand, within HMPREF1058_RS17670 at 373.688 kb on - strand, within HMPREF1058_RS17670 at 373.722 kb on - strand, within HMPREF1058_RS17670 at 373.772 kb on + strand, within HMPREF1058_RS17670 at 373.772 kb on + strand, within HMPREF1058_RS17670 at 373.772 kb on + strand, within HMPREF1058_RS17670 at 373.773 kb on - strand, within HMPREF1058_RS17670 at 373.773 kb on - strand, within HMPREF1058_RS17670 at 373.773 kb on - strand, within HMPREF1058_RS17670 at 373.789 kb on + strand at 373.874 kb on - strand, within HMPREF1058_RS17665 at 373.905 kb on + strand, within HMPREF1058_RS17665 at 373.905 kb on + strand, within HMPREF1058_RS17665 at 374.105 kb on + strand at 374.105 kb on + strand at 374.105 kb on + strand at 374.108 kb on - strand at 374.108 kb on - strand at 374.431 kb on - strand, within HMPREF1058_RS17655 at 374.434 kb on + strand, within HMPREF1058_RS17655 at 374.560 kb on - strand, within HMPREF1058_RS17655 at 374.567 kb on + strand, within HMPREF1058_RS17655 at 374.567 kb on + strand, within HMPREF1058_RS17655 at 374.642 kb on - strand, within HMPREF1058_RS17655 at 374.642 kb on - strand, within HMPREF1058_RS17655 at 374.731 kb on - strand, within HMPREF1058_RS17655 at 374.735 kb on + strand, within HMPREF1058_RS17655 at 374.735 kb on + strand, within HMPREF1058_RS17655 at 374.749 kb on - strand, within HMPREF1058_RS17655 at 374.750 kb on + strand, within HMPREF1058_RS17655 at 374.750 kb on + strand, within HMPREF1058_RS17655 at 374.751 kb on - strand, within HMPREF1058_RS17655
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 372,728 - HMPREF1058_RS17675 0.56 -0.1 372,728 - HMPREF1058_RS17675 0.56 -2.1 372,749 + HMPREF1058_RS17675 0.58 +0.8 372,750 - HMPREF1058_RS17675 0.58 +0.1 372,796 + HMPREF1058_RS17675 0.61 +1.0 372,797 - HMPREF1058_RS17675 0.62 +0.5 372,914 - HMPREF1058_RS17675 0.70 -1.4 373,042 + HMPREF1058_RS17675 0.80 +0.2 373,043 - HMPREF1058_RS17675 0.80 +0.9 373,043 - HMPREF1058_RS17675 0.80 +0.5 373,087 - HMPREF1058_RS17675 0.83 -0.0 373,087 - HMPREF1058_RS17675 0.83 +0.3 373,120 + HMPREF1058_RS17675 0.85 +0.3 373,121 - HMPREF1058_RS17675 0.86 -0.9 373,154 + HMPREF1058_RS17675 0.88 -0.1 373,155 - HMPREF1058_RS17675 0.88 +0.7 373,159 - HMPREF1058_RS17675 0.88 -0.6 373,310 - +0.1 373,320 - -0.7 373,330 + -0.7 373,334 + +0.9 373,334 + -0.8 373,335 - -0.9 373,423 - -0.6 373,470 + -2.2 373,505 - -0.8 373,507 - +0.9 373,564 - -0.7 373,666 - HMPREF1058_RS17670 0.31 -0.1 373,688 - HMPREF1058_RS17670 0.42 +0.1 373,688 - HMPREF1058_RS17670 0.42 -0.8 373,688 - HMPREF1058_RS17670 0.42 +0.1 373,722 - HMPREF1058_RS17670 0.58 -1.0 373,772 + HMPREF1058_RS17670 0.83 +2.3 373,772 + HMPREF1058_RS17670 0.83 +0.7 373,772 + HMPREF1058_RS17670 0.83 -1.4 373,773 - HMPREF1058_RS17670 0.83 -1.3 373,773 - HMPREF1058_RS17670 0.83 -0.5 373,773 - HMPREF1058_RS17670 0.83 +0.2 373,789 + -0.0 373,874 - HMPREF1058_RS17665 0.36 -0.8 373,905 + HMPREF1058_RS17665 0.51 -0.8 373,905 + HMPREF1058_RS17665 0.51 -0.9 374,105 + +0.2 374,105 + -1.1 374,105 + +0.2 374,108 - -0.1 374,108 - -0.4 374,431 - HMPREF1058_RS17655 0.11 +1.3 374,434 + HMPREF1058_RS17655 0.11 -0.3 374,560 - HMPREF1058_RS17655 0.29 +0.7 374,567 + HMPREF1058_RS17655 0.30 +0.8 374,567 + HMPREF1058_RS17655 0.30 -0.1 374,642 - HMPREF1058_RS17655 0.40 +0.7 374,642 - HMPREF1058_RS17655 0.40 +0.4 374,731 - HMPREF1058_RS17655 0.52 -0.0 374,735 + HMPREF1058_RS17655 0.53 +0.7 374,735 + HMPREF1058_RS17655 0.53 +1.8 374,749 - HMPREF1058_RS17655 0.55 +1.3 374,750 + HMPREF1058_RS17655 0.55 -0.5 374,750 + HMPREF1058_RS17655 0.55 -0.1 374,751 - HMPREF1058_RS17655 0.55 +1.5
Or see this region's nucleotide sequence