Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17055 and HMPREF1058_RS17050 overlap by 4 nucleotides HMPREF1058_RS17050 and HMPREF1058_RS17045 are separated by 16 nucleotides HMPREF1058_RS17045 and HMPREF1058_RS17040 are separated by 19 nucleotides
HMPREF1058_RS17055: HMPREF1058_RS17055 - flippase-like domain-containing protein, at 528,975 to 529,976
_RS17055
HMPREF1058_RS17050: HMPREF1058_RS17050 - CDP-alcohol phosphatidyltransferase family protein, at 529,973 to 530,923
_RS17050
HMPREF1058_RS17045: HMPREF1058_RS17045 - hypothetical protein, at 530,940 to 531,782
_RS17045
HMPREF1058_RS17040: HMPREF1058_RS17040 - NTP transferase domain-containing protein, at 531,802 to 532,512
_RS17040
Position (kb) 529
530
531 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 528.977 kb on - strand at 528.981 kb on - strand at 528.992 kb on + strand at 529.027 kb on - strand at 529.194 kb on + strand, within HMPREF1058_RS17055 at 529.263 kb on + strand, within HMPREF1058_RS17055 at 529.263 kb on + strand, within HMPREF1058_RS17055 at 529.313 kb on + strand, within HMPREF1058_RS17055 at 529.314 kb on - strand at 529.322 kb on + strand, within HMPREF1058_RS17055 at 529.483 kb on - strand, within HMPREF1058_RS17055 at 529.514 kb on + strand, within HMPREF1058_RS17055 at 529.514 kb on + strand, within HMPREF1058_RS17055 at 529.515 kb on - strand, within HMPREF1058_RS17055 at 529.515 kb on - strand, within HMPREF1058_RS17055 at 529.515 kb on - strand, within HMPREF1058_RS17055 at 529.530 kb on - strand, within HMPREF1058_RS17055 at 529.552 kb on + strand, within HMPREF1058_RS17055 at 529.610 kb on - strand, within HMPREF1058_RS17055 at 529.648 kb on + strand, within HMPREF1058_RS17055 at 529.761 kb on - strand, within HMPREF1058_RS17055 at 529.790 kb on + strand, within HMPREF1058_RS17055 at 529.793 kb on + strand, within HMPREF1058_RS17055 at 529.794 kb on - strand, within HMPREF1058_RS17055 at 529.796 kb on - strand, within HMPREF1058_RS17055 at 529.823 kb on + strand at 529.824 kb on - strand, within HMPREF1058_RS17055 at 529.824 kb on - strand, within HMPREF1058_RS17055 at 529.877 kb on + strand at 529.924 kb on - strand at 529.955 kb on + strand at 529.956 kb on - strand at 529.964 kb on - strand at 529.991 kb on - strand at 529.991 kb on - strand at 530.032 kb on + strand at 530.032 kb on + strand at 530.033 kb on - strand at 530.034 kb on + strand at 530.037 kb on - strand at 530.077 kb on - strand, within HMPREF1058_RS17050 at 530.108 kb on - strand, within HMPREF1058_RS17050 at 530.108 kb on - strand, within HMPREF1058_RS17050 at 530.110 kb on - strand, within HMPREF1058_RS17050 at 530.112 kb on - strand, within HMPREF1058_RS17050 at 530.112 kb on - strand, within HMPREF1058_RS17050 at 530.112 kb on - strand, within HMPREF1058_RS17050 at 530.112 kb on - strand, within HMPREF1058_RS17050 at 530.151 kb on + strand, within HMPREF1058_RS17050 at 530.239 kb on - strand, within HMPREF1058_RS17050 at 530.281 kb on + strand, within HMPREF1058_RS17050 at 530.283 kb on + strand, within HMPREF1058_RS17050 at 530.283 kb on + strand, within HMPREF1058_RS17050 at 530.298 kb on + strand, within HMPREF1058_RS17050 at 530.344 kb on - strand, within HMPREF1058_RS17050 at 530.417 kb on - strand, within HMPREF1058_RS17050 at 530.440 kb on + strand, within HMPREF1058_RS17050 at 530.441 kb on - strand, within HMPREF1058_RS17050 at 530.568 kb on + strand, within HMPREF1058_RS17050 at 530.588 kb on - strand, within HMPREF1058_RS17050 at 530.710 kb on + strand, within HMPREF1058_RS17050 at 530.751 kb on - strand, within HMPREF1058_RS17050 at 530.751 kb on - strand, within HMPREF1058_RS17050 at 530.756 kb on + strand, within HMPREF1058_RS17050 at 530.756 kb on + strand, within HMPREF1058_RS17050 at 530.826 kb on + strand, within HMPREF1058_RS17050 at 530.831 kb on + strand at 530.848 kb on - strand at 530.848 kb on - strand at 531.165 kb on + strand, within HMPREF1058_RS17045 at 531.323 kb on + strand, within HMPREF1058_RS17045 at 531.323 kb on + strand, within HMPREF1058_RS17045 at 531.324 kb on - strand, within HMPREF1058_RS17045 at 531.513 kb on - strand, within HMPREF1058_RS17045 at 531.513 kb on - strand, within HMPREF1058_RS17045 at 531.516 kb on + strand, within HMPREF1058_RS17045 at 531.517 kb on - strand, within HMPREF1058_RS17045 at 531.702 kb on - strand at 531.723 kb on + strand at 531.724 kb on - strand at 531.799 kb on - strand at 531.859 kb on + strand at 531.859 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 528,977 - +1.7 528,981 - +1.0 528,992 + -1.3 529,027 - +1.7 529,194 + HMPREF1058_RS17055 0.22 -1.8 529,263 + HMPREF1058_RS17055 0.29 -2.8 529,263 + HMPREF1058_RS17055 0.29 -2.0 529,313 + HMPREF1058_RS17055 0.34 -2.4 529,314 - -0.6 529,322 + HMPREF1058_RS17055 0.35 +0.8 529,483 - HMPREF1058_RS17055 0.51 +0.1 529,514 + HMPREF1058_RS17055 0.54 -3.6 529,514 + HMPREF1058_RS17055 0.54 -2.8 529,515 - HMPREF1058_RS17055 0.54 -1.4 529,515 - HMPREF1058_RS17055 0.54 -0.6 529,515 - HMPREF1058_RS17055 0.54 -0.8 529,530 - HMPREF1058_RS17055 0.55 -0.6 529,552 + HMPREF1058_RS17055 0.58 -0.9 529,610 - HMPREF1058_RS17055 0.63 +0.4 529,648 + HMPREF1058_RS17055 0.67 -1.9 529,761 - HMPREF1058_RS17055 0.78 -0.5 529,790 + HMPREF1058_RS17055 0.81 -0.9 529,793 + HMPREF1058_RS17055 0.82 -4.1 529,794 - HMPREF1058_RS17055 0.82 -0.2 529,796 - HMPREF1058_RS17055 0.82 +0.7 529,823 + +0.4 529,824 - HMPREF1058_RS17055 0.85 +1.8 529,824 - HMPREF1058_RS17055 0.85 -0.8 529,877 + -2.3 529,924 - -1.2 529,955 + -0.2 529,956 - +2.0 529,964 - +0.3 529,991 - -0.9 529,991 - +0.4 530,032 + -0.9 530,032 + -0.9 530,033 - -2.2 530,034 + -1.8 530,037 - -0.6 530,077 - HMPREF1058_RS17050 0.11 -2.2 530,108 - HMPREF1058_RS17050 0.14 -3.6 530,108 - HMPREF1058_RS17050 0.14 -2.2 530,110 - HMPREF1058_RS17050 0.14 -2.3 530,112 - HMPREF1058_RS17050 0.15 -1.4 530,112 - HMPREF1058_RS17050 0.15 -0.2 530,112 - HMPREF1058_RS17050 0.15 -4.6 530,112 - HMPREF1058_RS17050 0.15 -1.8 530,151 + HMPREF1058_RS17050 0.19 -0.6 530,239 - HMPREF1058_RS17050 0.28 -1.6 530,281 + HMPREF1058_RS17050 0.32 -3.8 530,283 + HMPREF1058_RS17050 0.33 -1.7 530,283 + HMPREF1058_RS17050 0.33 -1.2 530,298 + HMPREF1058_RS17050 0.34 -2.5 530,344 - HMPREF1058_RS17050 0.39 -0.5 530,417 - HMPREF1058_RS17050 0.47 -2.9 530,440 + HMPREF1058_RS17050 0.49 -0.6 530,441 - HMPREF1058_RS17050 0.49 -3.8 530,568 + HMPREF1058_RS17050 0.63 -2.8 530,588 - HMPREF1058_RS17050 0.65 -2.0 530,710 + HMPREF1058_RS17050 0.77 -0.6 530,751 - HMPREF1058_RS17050 0.82 -2.2 530,751 - HMPREF1058_RS17050 0.82 -1.8 530,756 + HMPREF1058_RS17050 0.82 -2.5 530,756 + HMPREF1058_RS17050 0.82 -2.8 530,826 + HMPREF1058_RS17050 0.90 -1.0 530,831 + -1.8 530,848 - -1.6 530,848 - -3.8 531,165 + HMPREF1058_RS17045 0.27 -1.0 531,323 + HMPREF1058_RS17045 0.45 -1.1 531,323 + HMPREF1058_RS17045 0.45 -0.2 531,324 - HMPREF1058_RS17045 0.46 -1.2 531,513 - HMPREF1058_RS17045 0.68 -2.4 531,513 - HMPREF1058_RS17045 0.68 -2.4 531,516 + HMPREF1058_RS17045 0.68 -1.4 531,517 - HMPREF1058_RS17045 0.68 -2.1 531,702 - -0.6 531,723 + -1.4 531,724 - -3.1 531,799 - +0.0 531,859 + +0.4 531,859 + -1.8
Or see this region's nucleotide sequence