Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17045

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17055 and HMPREF1058_RS17050 overlap by 4 nucleotidesHMPREF1058_RS17050 and HMPREF1058_RS17045 are separated by 16 nucleotidesHMPREF1058_RS17045 and HMPREF1058_RS17040 are separated by 19 nucleotidesHMPREF1058_RS17040 and HMPREF1058_RS17035 are separated by 41 nucleotides HMPREF1058_RS17055: HMPREF1058_RS17055 - flippase-like domain-containing protein, at 528,975 to 529,976 _RS17055 HMPREF1058_RS17050: HMPREF1058_RS17050 - CDP-alcohol phosphatidyltransferase family protein, at 529,973 to 530,923 _RS17050 HMPREF1058_RS17045: HMPREF1058_RS17045 - hypothetical protein, at 530,940 to 531,782 _RS17045 HMPREF1058_RS17040: HMPREF1058_RS17040 - NTP transferase domain-containing protein, at 531,802 to 532,512 _RS17040 HMPREF1058_RS17035: HMPREF1058_RS17035 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 532,554 to 533,654 _RS17035 Position (kb) 530 531 532Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 529.955 kb on + strandat 529.956 kb on - strandat 529.964 kb on - strandat 529.991 kb on - strandat 529.991 kb on - strandat 530.032 kb on + strandat 530.032 kb on + strandat 530.033 kb on - strandat 530.034 kb on + strandat 530.037 kb on - strandat 530.077 kb on - strand, within HMPREF1058_RS17050at 530.108 kb on - strand, within HMPREF1058_RS17050at 530.108 kb on - strand, within HMPREF1058_RS17050at 530.110 kb on - strand, within HMPREF1058_RS17050at 530.112 kb on - strand, within HMPREF1058_RS17050at 530.112 kb on - strand, within HMPREF1058_RS17050at 530.112 kb on - strand, within HMPREF1058_RS17050at 530.112 kb on - strand, within HMPREF1058_RS17050at 530.151 kb on + strand, within HMPREF1058_RS17050at 530.239 kb on - strand, within HMPREF1058_RS17050at 530.281 kb on + strand, within HMPREF1058_RS17050at 530.283 kb on + strand, within HMPREF1058_RS17050at 530.283 kb on + strand, within HMPREF1058_RS17050at 530.298 kb on + strand, within HMPREF1058_RS17050at 530.344 kb on - strand, within HMPREF1058_RS17050at 530.417 kb on - strand, within HMPREF1058_RS17050at 530.440 kb on + strand, within HMPREF1058_RS17050at 530.441 kb on - strand, within HMPREF1058_RS17050at 530.568 kb on + strand, within HMPREF1058_RS17050at 530.588 kb on - strand, within HMPREF1058_RS17050at 530.710 kb on + strand, within HMPREF1058_RS17050at 530.751 kb on - strand, within HMPREF1058_RS17050at 530.751 kb on - strand, within HMPREF1058_RS17050at 530.756 kb on + strand, within HMPREF1058_RS17050at 530.756 kb on + strand, within HMPREF1058_RS17050at 530.826 kb on + strand, within HMPREF1058_RS17050at 530.831 kb on + strandat 530.848 kb on - strandat 530.848 kb on - strandat 531.165 kb on + strand, within HMPREF1058_RS17045at 531.323 kb on + strand, within HMPREF1058_RS17045at 531.323 kb on + strand, within HMPREF1058_RS17045at 531.324 kb on - strand, within HMPREF1058_RS17045at 531.513 kb on - strand, within HMPREF1058_RS17045at 531.513 kb on - strand, within HMPREF1058_RS17045at 531.516 kb on + strand, within HMPREF1058_RS17045at 531.517 kb on - strand, within HMPREF1058_RS17045at 531.702 kb on - strandat 531.723 kb on + strandat 531.724 kb on - strandat 531.799 kb on - strandat 531.859 kb on + strandat 531.859 kb on + strandat 531.937 kb on - strand, within HMPREF1058_RS17040at 531.946 kb on - strand, within HMPREF1058_RS17040at 531.958 kb on - strand, within HMPREF1058_RS17040at 532.013 kb on - strand, within HMPREF1058_RS17040at 532.013 kb on - strand, within HMPREF1058_RS17040at 532.014 kb on + strand, within HMPREF1058_RS17040at 532.016 kb on + strand, within HMPREF1058_RS17040at 532.080 kb on + strand, within HMPREF1058_RS17040at 532.080 kb on + strand, within HMPREF1058_RS17040at 532.081 kb on - strand, within HMPREF1058_RS17040at 532.083 kb on - strand, within HMPREF1058_RS17040at 532.103 kb on - strand, within HMPREF1058_RS17040at 532.124 kb on + strand, within HMPREF1058_RS17040at 532.125 kb on - strand, within HMPREF1058_RS17040at 532.188 kb on + strand, within HMPREF1058_RS17040at 532.215 kb on + strand, within HMPREF1058_RS17040at 532.354 kb on - strand, within HMPREF1058_RS17040at 532.498 kb on - strandat 532.516 kb on + strandat 532.590 kb on - strandat 532.616 kb on - strandat 532.622 kb on + strandat 532.688 kb on - strand, within HMPREF1058_RS17035at 532.688 kb on - strand, within HMPREF1058_RS17035at 532.688 kb on - strand, within HMPREF1058_RS17035at 532.692 kb on - strand, within HMPREF1058_RS17035at 532.742 kb on - strandat 532.748 kb on + strand, within HMPREF1058_RS17035at 532.770 kb on + strand, within HMPREF1058_RS17035at 532.770 kb on + strand, within HMPREF1058_RS17035at 532.770 kb on + strand, within HMPREF1058_RS17035

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Per-strain Table

Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
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529,955 + -0.2
529,956 - +2.0
529,964 - +0.3
529,991 - -0.9
529,991 - +0.4
530,032 + -0.9
530,032 + -0.9
530,033 - -2.2
530,034 + -1.8
530,037 - -0.6
530,077 - HMPREF1058_RS17050 0.11 -2.2
530,108 - HMPREF1058_RS17050 0.14 -3.6
530,108 - HMPREF1058_RS17050 0.14 -2.2
530,110 - HMPREF1058_RS17050 0.14 -2.3
530,112 - HMPREF1058_RS17050 0.15 -1.4
530,112 - HMPREF1058_RS17050 0.15 -0.2
530,112 - HMPREF1058_RS17050 0.15 -4.6
530,112 - HMPREF1058_RS17050 0.15 -1.8
530,151 + HMPREF1058_RS17050 0.19 -0.6
530,239 - HMPREF1058_RS17050 0.28 -1.6
530,281 + HMPREF1058_RS17050 0.32 -3.8
530,283 + HMPREF1058_RS17050 0.33 -1.7
530,283 + HMPREF1058_RS17050 0.33 -1.2
530,298 + HMPREF1058_RS17050 0.34 -2.5
530,344 - HMPREF1058_RS17050 0.39 -0.5
530,417 - HMPREF1058_RS17050 0.47 -2.9
530,440 + HMPREF1058_RS17050 0.49 -0.6
530,441 - HMPREF1058_RS17050 0.49 -3.8
530,568 + HMPREF1058_RS17050 0.63 -2.8
530,588 - HMPREF1058_RS17050 0.65 -2.0
530,710 + HMPREF1058_RS17050 0.77 -0.6
530,751 - HMPREF1058_RS17050 0.82 -2.2
530,751 - HMPREF1058_RS17050 0.82 -1.8
530,756 + HMPREF1058_RS17050 0.82 -2.5
530,756 + HMPREF1058_RS17050 0.82 -2.8
530,826 + HMPREF1058_RS17050 0.90 -1.0
530,831 + -1.8
530,848 - -1.6
530,848 - -3.8
531,165 + HMPREF1058_RS17045 0.27 -1.0
531,323 + HMPREF1058_RS17045 0.45 -1.1
531,323 + HMPREF1058_RS17045 0.45 -0.2
531,324 - HMPREF1058_RS17045 0.46 -1.2
531,513 - HMPREF1058_RS17045 0.68 -2.4
531,513 - HMPREF1058_RS17045 0.68 -2.4
531,516 + HMPREF1058_RS17045 0.68 -1.4
531,517 - HMPREF1058_RS17045 0.68 -2.1
531,702 - -0.6
531,723 + -1.4
531,724 - -3.1
531,799 - +0.0
531,859 + +0.4
531,859 + -1.8
531,937 - HMPREF1058_RS17040 0.19 -0.2
531,946 - HMPREF1058_RS17040 0.20 -1.2
531,958 - HMPREF1058_RS17040 0.22 -1.1
532,013 - HMPREF1058_RS17040 0.30 -0.6
532,013 - HMPREF1058_RS17040 0.30 -2.5
532,014 + HMPREF1058_RS17040 0.30 -2.0
532,016 + HMPREF1058_RS17040 0.30 -2.1
532,080 + HMPREF1058_RS17040 0.39 -0.9
532,080 + HMPREF1058_RS17040 0.39 -2.2
532,081 - HMPREF1058_RS17040 0.39 -1.9
532,083 - HMPREF1058_RS17040 0.40 -0.8
532,103 - HMPREF1058_RS17040 0.42 -1.1
532,124 + HMPREF1058_RS17040 0.45 -0.9
532,125 - HMPREF1058_RS17040 0.45 -1.2
532,188 + HMPREF1058_RS17040 0.54 -2.6
532,215 + HMPREF1058_RS17040 0.58 -0.9
532,354 - HMPREF1058_RS17040 0.78 -1.6
532,498 - -3.0
532,516 + -0.9
532,590 - -1.3
532,616 - +0.1
532,622 + -2.3
532,688 - HMPREF1058_RS17035 0.12 -2.9
532,688 - HMPREF1058_RS17035 0.12 -2.3
532,688 - HMPREF1058_RS17035 0.12 -2.9
532,692 - HMPREF1058_RS17035 0.13 -2.3
532,742 - +1.4
532,748 + HMPREF1058_RS17035 0.18 -1.6
532,770 + HMPREF1058_RS17035 0.20 -1.6
532,770 + HMPREF1058_RS17035 0.20 +0.4
532,770 + HMPREF1058_RS17035 0.20 +0.4

Or see this region's nucleotide sequence