Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17045 and HMPREF1058_RS17040 are separated by 19 nucleotides HMPREF1058_RS17040 and HMPREF1058_RS17035 are separated by 41 nucleotides HMPREF1058_RS17035 and HMPREF1058_RS17030 are separated by 26 nucleotides
HMPREF1058_RS17045: HMPREF1058_RS17045 - hypothetical protein, at 530,940 to 531,782
_RS17045
HMPREF1058_RS17040: HMPREF1058_RS17040 - NTP transferase domain-containing protein, at 531,802 to 532,512
_RS17040
HMPREF1058_RS17035: HMPREF1058_RS17035 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 532,554 to 533,654
_RS17035
HMPREF1058_RS17030: HMPREF1058_RS17030 - DUF4837 family protein, at 533,681 to 534,745
_RS17030
Position (kb) 532
533
534 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 531.702 kb on - strand at 531.723 kb on + strand at 531.724 kb on - strand at 531.799 kb on - strand at 531.859 kb on + strand at 531.859 kb on + strand at 531.937 kb on - strand, within HMPREF1058_RS17040 at 531.946 kb on - strand, within HMPREF1058_RS17040 at 531.958 kb on - strand, within HMPREF1058_RS17040 at 532.013 kb on - strand, within HMPREF1058_RS17040 at 532.013 kb on - strand, within HMPREF1058_RS17040 at 532.014 kb on + strand, within HMPREF1058_RS17040 at 532.016 kb on + strand, within HMPREF1058_RS17040 at 532.080 kb on + strand, within HMPREF1058_RS17040 at 532.080 kb on + strand, within HMPREF1058_RS17040 at 532.081 kb on - strand, within HMPREF1058_RS17040 at 532.083 kb on - strand, within HMPREF1058_RS17040 at 532.103 kb on - strand, within HMPREF1058_RS17040 at 532.124 kb on + strand, within HMPREF1058_RS17040 at 532.125 kb on - strand, within HMPREF1058_RS17040 at 532.188 kb on + strand, within HMPREF1058_RS17040 at 532.215 kb on + strand, within HMPREF1058_RS17040 at 532.354 kb on - strand, within HMPREF1058_RS17040 at 532.498 kb on - strand at 532.516 kb on + strand at 532.590 kb on - strand at 532.616 kb on - strand at 532.622 kb on + strand at 532.688 kb on - strand, within HMPREF1058_RS17035 at 532.688 kb on - strand, within HMPREF1058_RS17035 at 532.688 kb on - strand, within HMPREF1058_RS17035 at 532.692 kb on - strand, within HMPREF1058_RS17035 at 532.742 kb on - strand at 532.748 kb on + strand, within HMPREF1058_RS17035 at 532.770 kb on + strand, within HMPREF1058_RS17035 at 532.770 kb on + strand, within HMPREF1058_RS17035 at 532.770 kb on + strand, within HMPREF1058_RS17035 at 532.792 kb on + strand, within HMPREF1058_RS17035 at 532.793 kb on - strand, within HMPREF1058_RS17035 at 532.849 kb on + strand, within HMPREF1058_RS17035 at 532.850 kb on - strand, within HMPREF1058_RS17035 at 532.850 kb on - strand, within HMPREF1058_RS17035 at 532.879 kb on + strand, within HMPREF1058_RS17035 at 532.965 kb on + strand, within HMPREF1058_RS17035 at 532.967 kb on + strand, within HMPREF1058_RS17035 at 533.034 kb on + strand, within HMPREF1058_RS17035 at 533.034 kb on + strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.035 kb on - strand, within HMPREF1058_RS17035 at 533.067 kb on + strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.103 kb on - strand, within HMPREF1058_RS17035 at 533.117 kb on + strand, within HMPREF1058_RS17035 at 533.136 kb on + strand, within HMPREF1058_RS17035 at 533.228 kb on + strand at 533.231 kb on - strand, within HMPREF1058_RS17035 at 533.274 kb on - strand, within HMPREF1058_RS17035 at 533.274 kb on - strand, within HMPREF1058_RS17035 at 533.280 kb on - strand, within HMPREF1058_RS17035 at 533.499 kb on - strand, within HMPREF1058_RS17035 at 533.544 kb on - strand, within HMPREF1058_RS17035 at 533.586 kb on + strand at 533.594 kb on - strand at 533.641 kb on + strand at 533.656 kb on + strand at 533.657 kb on - strand at 533.658 kb on + strand at 533.661 kb on + strand at 533.662 kb on - strand at 533.662 kb on - strand at 533.662 kb on - strand at 533.662 kb on - strand at 533.664 kb on - strand at 533.664 kb on - strand at 533.669 kb on - strand at 533.669 kb on - strand at 533.671 kb on - strand at 533.702 kb on - strand at 533.736 kb on - strand at 534.010 kb on - strand, within HMPREF1058_RS17030 at 534.184 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 531,702 - -0.6 531,723 + -1.4 531,724 - -3.1 531,799 - +0.0 531,859 + +0.4 531,859 + -1.8 531,937 - HMPREF1058_RS17040 0.19 -0.2 531,946 - HMPREF1058_RS17040 0.20 -1.2 531,958 - HMPREF1058_RS17040 0.22 -1.1 532,013 - HMPREF1058_RS17040 0.30 -0.6 532,013 - HMPREF1058_RS17040 0.30 -2.5 532,014 + HMPREF1058_RS17040 0.30 -2.0 532,016 + HMPREF1058_RS17040 0.30 -2.1 532,080 + HMPREF1058_RS17040 0.39 -0.9 532,080 + HMPREF1058_RS17040 0.39 -2.2 532,081 - HMPREF1058_RS17040 0.39 -1.9 532,083 - HMPREF1058_RS17040 0.40 -0.8 532,103 - HMPREF1058_RS17040 0.42 -1.1 532,124 + HMPREF1058_RS17040 0.45 -0.9 532,125 - HMPREF1058_RS17040 0.45 -1.2 532,188 + HMPREF1058_RS17040 0.54 -2.6 532,215 + HMPREF1058_RS17040 0.58 -0.9 532,354 - HMPREF1058_RS17040 0.78 -1.6 532,498 - -3.0 532,516 + -0.9 532,590 - -1.3 532,616 - +0.1 532,622 + -2.3 532,688 - HMPREF1058_RS17035 0.12 -2.9 532,688 - HMPREF1058_RS17035 0.12 -2.3 532,688 - HMPREF1058_RS17035 0.12 -2.9 532,692 - HMPREF1058_RS17035 0.13 -2.3 532,742 - +1.4 532,748 + HMPREF1058_RS17035 0.18 -1.6 532,770 + HMPREF1058_RS17035 0.20 -1.6 532,770 + HMPREF1058_RS17035 0.20 +0.4 532,770 + HMPREF1058_RS17035 0.20 +0.4 532,792 + HMPREF1058_RS17035 0.22 -0.2 532,793 - HMPREF1058_RS17035 0.22 -2.5 532,849 + HMPREF1058_RS17035 0.27 -0.2 532,850 - HMPREF1058_RS17035 0.27 -1.9 532,850 - HMPREF1058_RS17035 0.27 -3.3 532,879 + HMPREF1058_RS17035 0.30 -3.1 532,965 + HMPREF1058_RS17035 0.37 -2.5 532,967 + HMPREF1058_RS17035 0.38 -1.2 533,034 + HMPREF1058_RS17035 0.44 -3.2 533,034 + HMPREF1058_RS17035 0.44 -2.2 533,035 - HMPREF1058_RS17035 0.44 -1.2 533,035 - HMPREF1058_RS17035 0.44 -1.5 533,035 - HMPREF1058_RS17035 0.44 -1.6 533,035 - HMPREF1058_RS17035 0.44 -1.8 533,035 - HMPREF1058_RS17035 0.44 -4.0 533,067 + HMPREF1058_RS17035 0.47 -2.7 533,103 - HMPREF1058_RS17035 0.50 -3.7 533,103 - HMPREF1058_RS17035 0.50 -3.6 533,103 - HMPREF1058_RS17035 0.50 -1.2 533,103 - HMPREF1058_RS17035 0.50 -1.9 533,103 - HMPREF1058_RS17035 0.50 -3.0 533,117 + HMPREF1058_RS17035 0.51 -1.9 533,136 + HMPREF1058_RS17035 0.53 -2.1 533,228 + -1.2 533,231 - HMPREF1058_RS17035 0.61 -2.5 533,274 - HMPREF1058_RS17035 0.65 -3.7 533,274 - HMPREF1058_RS17035 0.65 -3.6 533,280 - HMPREF1058_RS17035 0.66 -3.3 533,499 - HMPREF1058_RS17035 0.86 -2.2 533,544 - HMPREF1058_RS17035 0.90 -3.1 533,586 + -0.6 533,594 - -1.4 533,641 + -2.5 533,656 + -1.2 533,657 - -2.3 533,658 + -2.4 533,661 + -3.9 533,662 - -0.5 533,662 - -0.7 533,662 - -0.6 533,662 - -2.2 533,664 - -0.3 533,664 - -0.8 533,669 - -0.6 533,669 - +0.2 533,671 - -1.2 533,702 - -1.1 533,736 - +0.2 534,010 - HMPREF1058_RS17030 0.31 -0.9 534,184 - +2.1
Or see this region's nucleotide sequence