Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16840 and HMPREF1058_RS16835 are separated by 127 nucleotides HMPREF1058_RS16835 and HMPREF1058_RS16830 are separated by 34 nucleotides HMPREF1058_RS16830 and HMPREF1058_RS16825 overlap by 1 nucleotides
HMPREF1058_RS16840: HMPREF1058_RS16840 - energy transducer TonB, at 582,895 to 583,980
_RS16840
HMPREF1058_RS16835: HMPREF1058_RS16835 - ketol-acid reductoisomerase, at 584,108 to 585,151
_RS16835
HMPREF1058_RS16830: HMPREF1058_RS16830 - acyl-ACP thioesterase, at 585,186 to 585,929
_RS16830
HMPREF1058_RS16825: HMPREF1058_RS16825 - acetolactate synthase small subunit, at 585,929 to 586,483
_RS16825
Position (kb) 584
585
586 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 583.162 kb on - strand, within HMPREF1058_RS16840 at 583.206 kb on + strand, within HMPREF1058_RS16840 at 583.206 kb on + strand at 583.207 kb on - strand, within HMPREF1058_RS16840 at 583.207 kb on - strand, within HMPREF1058_RS16840 at 583.207 kb on - strand, within HMPREF1058_RS16840 at 583.256 kb on + strand, within HMPREF1058_RS16840 at 583.261 kb on + strand, within HMPREF1058_RS16840 at 583.266 kb on - strand, within HMPREF1058_RS16840 at 583.266 kb on - strand, within HMPREF1058_RS16840 at 583.313 kb on + strand, within HMPREF1058_RS16840 at 583.313 kb on + strand, within HMPREF1058_RS16840 at 583.314 kb on - strand, within HMPREF1058_RS16840 at 583.372 kb on - strand, within HMPREF1058_RS16840 at 583.375 kb on + strand, within HMPREF1058_RS16840 at 583.375 kb on + strand, within HMPREF1058_RS16840 at 583.376 kb on - strand, within HMPREF1058_RS16840 at 583.465 kb on - strand, within HMPREF1058_RS16840 at 583.527 kb on + strand, within HMPREF1058_RS16840 at 583.614 kb on - strand, within HMPREF1058_RS16840 at 583.614 kb on - strand, within HMPREF1058_RS16840 at 583.626 kb on + strand, within HMPREF1058_RS16840 at 583.650 kb on + strand, within HMPREF1058_RS16840 at 583.650 kb on + strand, within HMPREF1058_RS16840 at 583.651 kb on - strand, within HMPREF1058_RS16840 at 583.654 kb on - strand, within HMPREF1058_RS16840 at 583.654 kb on - strand, within HMPREF1058_RS16840 at 583.654 kb on - strand, within HMPREF1058_RS16840 at 583.654 kb on - strand, within HMPREF1058_RS16840 at 583.657 kb on + strand, within HMPREF1058_RS16840 at 583.755 kb on - strand, within HMPREF1058_RS16840 at 583.759 kb on - strand, within HMPREF1058_RS16840 at 583.794 kb on + strand, within HMPREF1058_RS16840 at 583.843 kb on + strand, within HMPREF1058_RS16840 at 583.843 kb on + strand, within HMPREF1058_RS16840 at 583.892 kb on + strand at 583.893 kb on - strand at 583.909 kb on - strand at 583.942 kb on + strand at 583.972 kb on - strand at 583.974 kb on + strand at 583.975 kb on - strand at 584.023 kb on + strand at 584.030 kb on + strand at 584.045 kb on + strand at 584.045 kb on + strand at 584.045 kb on + strand at 584.046 kb on - strand at 584.046 kb on - strand at 584.046 kb on - strand at 584.048 kb on - strand at 584.048 kb on - strand at 584.052 kb on - strand at 584.090 kb on + strand at 584.093 kb on - strand at 584.093 kb on - strand at 584.095 kb on + strand at 584.095 kb on + strand at 584.095 kb on + strand at 584.096 kb on - strand at 584.096 kb on - strand at 584.096 kb on - strand at 584.102 kb on + strand at 584.106 kb on + strand at 584.107 kb on - strand at 584.110 kb on - strand at 584.215 kb on + strand, within HMPREF1058_RS16835 at 584.221 kb on + strand, within HMPREF1058_RS16835 at 584.270 kb on + strand, within HMPREF1058_RS16835 at 584.282 kb on + strand, within HMPREF1058_RS16835 at 584.344 kb on + strand, within HMPREF1058_RS16835 at 584.344 kb on + strand, within HMPREF1058_RS16835 at 584.345 kb on - strand, within HMPREF1058_RS16835 at 584.353 kb on + strand, within HMPREF1058_RS16835 at 584.358 kb on + strand, within HMPREF1058_RS16835 at 584.359 kb on - strand, within HMPREF1058_RS16835 at 584.359 kb on - strand, within HMPREF1058_RS16835 at 584.359 kb on - strand, within HMPREF1058_RS16835 at 584.408 kb on + strand, within HMPREF1058_RS16835 at 584.465 kb on + strand, within HMPREF1058_RS16835 at 584.465 kb on + strand, within HMPREF1058_RS16835 at 584.602 kb on + strand, within HMPREF1058_RS16835 at 584.605 kb on + strand, within HMPREF1058_RS16835 at 584.641 kb on + strand, within HMPREF1058_RS16835 at 584.748 kb on - strand, within HMPREF1058_RS16835 at 584.755 kb on + strand, within HMPREF1058_RS16835 at 584.845 kb on + strand, within HMPREF1058_RS16835 at 584.845 kb on + strand, within HMPREF1058_RS16835 at 584.845 kb on + strand, within HMPREF1058_RS16835 at 584.984 kb on + strand, within HMPREF1058_RS16835 at 584.985 kb on - strand, within HMPREF1058_RS16835 at 585.187 kb on + strand at 585.196 kb on - strand at 585.244 kb on - strand at 585.246 kb on - strand at 585.250 kb on + strand at 585.250 kb on + strand at 585.291 kb on - strand, within HMPREF1058_RS16830 at 585.298 kb on + strand, within HMPREF1058_RS16830 at 585.299 kb on - strand, within HMPREF1058_RS16830 at 585.302 kb on - strand, within HMPREF1058_RS16830 at 585.313 kb on - strand, within HMPREF1058_RS16830 at 585.316 kb on + strand, within HMPREF1058_RS16830 at 585.362 kb on + strand, within HMPREF1058_RS16830 at 585.387 kb on + strand, within HMPREF1058_RS16830 at 585.387 kb on + strand, within HMPREF1058_RS16830 at 585.388 kb on - strand, within HMPREF1058_RS16830 at 585.388 kb on - strand, within HMPREF1058_RS16830 at 585.389 kb on + strand, within HMPREF1058_RS16830 at 585.390 kb on - strand, within HMPREF1058_RS16830 at 585.392 kb on - strand, within HMPREF1058_RS16830 at 585.396 kb on - strand, within HMPREF1058_RS16830 at 585.396 kb on - strand, within HMPREF1058_RS16830 at 585.399 kb on - strand, within HMPREF1058_RS16830 at 585.399 kb on - strand, within HMPREF1058_RS16830 at 585.480 kb on - strand, within HMPREF1058_RS16830 at 585.496 kb on - strand, within HMPREF1058_RS16830 at 585.497 kb on + strand, within HMPREF1058_RS16830 at 585.516 kb on + strand, within HMPREF1058_RS16830 at 585.520 kb on + strand, within HMPREF1058_RS16830 at 585.521 kb on - strand, within HMPREF1058_RS16830 at 585.521 kb on - strand, within HMPREF1058_RS16830 at 585.521 kb on - strand, within HMPREF1058_RS16830 at 585.531 kb on - strand, within HMPREF1058_RS16830 at 585.533 kb on + strand, within HMPREF1058_RS16830 at 585.657 kb on - strand, within HMPREF1058_RS16830 at 585.707 kb on - strand, within HMPREF1058_RS16830 at 585.719 kb on + strand, within HMPREF1058_RS16830 at 585.720 kb on - strand, within HMPREF1058_RS16830 at 585.732 kb on + strand, within HMPREF1058_RS16830 at 585.758 kb on + strand, within HMPREF1058_RS16830 at 585.759 kb on - strand, within HMPREF1058_RS16830 at 585.780 kb on - strand, within HMPREF1058_RS16830 at 585.901 kb on + strand at 586.003 kb on + strand, within HMPREF1058_RS16825 at 586.004 kb on - strand, within HMPREF1058_RS16825 at 586.079 kb on - strand, within HMPREF1058_RS16825 at 586.133 kb on + strand, within HMPREF1058_RS16825 at 586.148 kb on - strand, within HMPREF1058_RS16825
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 583,162 - HMPREF1058_RS16840 0.25 +0.5 583,206 + HMPREF1058_RS16840 0.29 -0.2 583,206 + -0.4 583,207 - HMPREF1058_RS16840 0.29 +1.6 583,207 - HMPREF1058_RS16840 0.29 -0.6 583,207 - HMPREF1058_RS16840 0.29 -1.0 583,256 + HMPREF1058_RS16840 0.33 +1.3 583,261 + HMPREF1058_RS16840 0.34 -0.2 583,266 - HMPREF1058_RS16840 0.34 -0.1 583,266 - HMPREF1058_RS16840 0.34 -0.2 583,313 + HMPREF1058_RS16840 0.38 +0.4 583,313 + HMPREF1058_RS16840 0.38 +0.4 583,314 - HMPREF1058_RS16840 0.39 -0.1 583,372 - HMPREF1058_RS16840 0.44 -0.8 583,375 + HMPREF1058_RS16840 0.44 +0.2 583,375 + HMPREF1058_RS16840 0.44 +0.4 583,376 - HMPREF1058_RS16840 0.44 +1.3 583,465 - HMPREF1058_RS16840 0.52 +1.4 583,527 + HMPREF1058_RS16840 0.58 +0.1 583,614 - HMPREF1058_RS16840 0.66 +0.1 583,614 - HMPREF1058_RS16840 0.66 +2.2 583,626 + HMPREF1058_RS16840 0.67 -1.9 583,650 + HMPREF1058_RS16840 0.70 -1.3 583,650 + HMPREF1058_RS16840 0.70 -1.3 583,651 - HMPREF1058_RS16840 0.70 +1.1 583,654 - HMPREF1058_RS16840 0.70 +0.1 583,654 - HMPREF1058_RS16840 0.70 +0.4 583,654 - HMPREF1058_RS16840 0.70 +0.8 583,654 - HMPREF1058_RS16840 0.70 +0.7 583,657 + HMPREF1058_RS16840 0.70 +1.9 583,755 - HMPREF1058_RS16840 0.79 -0.1 583,759 - HMPREF1058_RS16840 0.80 +0.5 583,794 + HMPREF1058_RS16840 0.83 -0.9 583,843 + HMPREF1058_RS16840 0.87 +0.1 583,843 + HMPREF1058_RS16840 0.87 -0.5 583,892 + -0.6 583,893 - +0.6 583,909 - +0.2 583,942 + -0.3 583,972 - -0.7 583,974 + +0.1 583,975 - -0.6 584,023 + -0.7 584,030 + -0.6 584,045 + -2.1 584,045 + -0.5 584,045 + -0.0 584,046 - +0.8 584,046 - +0.0 584,046 - +0.1 584,048 - -0.2 584,048 - +0.5 584,052 - -0.8 584,090 + -2.8 584,093 - -2.1 584,093 - -0.6 584,095 + -4.2 584,095 + -2.2 584,095 + -2.3 584,096 - -1.8 584,096 - -0.3 584,096 - -0.8 584,102 + -0.9 584,106 + -1.4 584,107 - -1.0 584,110 - -0.9 584,215 + HMPREF1058_RS16835 0.10 -2.9 584,221 + HMPREF1058_RS16835 0.11 -2.7 584,270 + HMPREF1058_RS16835 0.16 -4.4 584,282 + HMPREF1058_RS16835 0.17 -0.9 584,344 + HMPREF1058_RS16835 0.23 -2.8 584,344 + HMPREF1058_RS16835 0.23 -0.6 584,345 - HMPREF1058_RS16835 0.23 -2.7 584,353 + HMPREF1058_RS16835 0.23 -0.6 584,358 + HMPREF1058_RS16835 0.24 -3.1 584,359 - HMPREF1058_RS16835 0.24 -3.0 584,359 - HMPREF1058_RS16835 0.24 -4.7 584,359 - HMPREF1058_RS16835 0.24 -3.1 584,408 + HMPREF1058_RS16835 0.29 -2.6 584,465 + HMPREF1058_RS16835 0.34 -2.9 584,465 + HMPREF1058_RS16835 0.34 -1.8 584,602 + HMPREF1058_RS16835 0.47 -2.8 584,605 + HMPREF1058_RS16835 0.48 -3.0 584,641 + HMPREF1058_RS16835 0.51 -2.1 584,748 - HMPREF1058_RS16835 0.61 -4.7 584,755 + HMPREF1058_RS16835 0.62 -2.2 584,845 + HMPREF1058_RS16835 0.71 -1.8 584,845 + HMPREF1058_RS16835 0.71 -0.6 584,845 + HMPREF1058_RS16835 0.71 -0.9 584,984 + HMPREF1058_RS16835 0.84 -0.9 584,985 - HMPREF1058_RS16835 0.84 -2.9 585,187 + -2.5 585,196 - +1.0 585,244 - +1.2 585,246 - +2.5 585,250 + -2.2 585,250 + -1.4 585,291 - HMPREF1058_RS16830 0.14 +0.9 585,298 + HMPREF1058_RS16830 0.15 -0.6 585,299 - HMPREF1058_RS16830 0.15 +0.3 585,302 - HMPREF1058_RS16830 0.16 +1.2 585,313 - HMPREF1058_RS16830 0.17 +0.9 585,316 + HMPREF1058_RS16830 0.17 -2.1 585,362 + HMPREF1058_RS16830 0.24 -1.6 585,387 + HMPREF1058_RS16830 0.27 -2.1 585,387 + HMPREF1058_RS16830 0.27 +0.1 585,388 - HMPREF1058_RS16830 0.27 +0.1 585,388 - HMPREF1058_RS16830 0.27 +0.3 585,389 + HMPREF1058_RS16830 0.27 -3.7 585,390 - HMPREF1058_RS16830 0.27 +0.7 585,392 - HMPREF1058_RS16830 0.28 +0.3 585,396 - HMPREF1058_RS16830 0.28 -0.9 585,396 - HMPREF1058_RS16830 0.28 +0.7 585,399 - HMPREF1058_RS16830 0.29 -0.1 585,399 - HMPREF1058_RS16830 0.29 +1.3 585,480 - HMPREF1058_RS16830 0.40 +1.0 585,496 - HMPREF1058_RS16830 0.42 +0.1 585,497 + HMPREF1058_RS16830 0.42 -0.9 585,516 + HMPREF1058_RS16830 0.44 -2.4 585,520 + HMPREF1058_RS16830 0.45 -2.8 585,521 - HMPREF1058_RS16830 0.45 +0.8 585,521 - HMPREF1058_RS16830 0.45 +0.8 585,521 - HMPREF1058_RS16830 0.45 +0.9 585,531 - HMPREF1058_RS16830 0.46 -0.1 585,533 + HMPREF1058_RS16830 0.47 -1.9 585,657 - HMPREF1058_RS16830 0.63 -0.2 585,707 - HMPREF1058_RS16830 0.70 +0.6 585,719 + HMPREF1058_RS16830 0.72 -4.2 585,720 - HMPREF1058_RS16830 0.72 +1.6 585,732 + HMPREF1058_RS16830 0.73 -5.7 585,758 + HMPREF1058_RS16830 0.77 -3.4 585,759 - HMPREF1058_RS16830 0.77 +1.0 585,780 - HMPREF1058_RS16830 0.80 +2.1 585,901 + -1.9 586,003 + HMPREF1058_RS16825 0.13 -4.2 586,004 - HMPREF1058_RS16825 0.14 -2.4 586,079 - HMPREF1058_RS16825 0.27 -1.4 586,133 + HMPREF1058_RS16825 0.37 -1.4 586,148 - HMPREF1058_RS16825 0.39 -3.3
Or see this region's nucleotide sequence