Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16515 and HMPREF1058_RS16510 are separated by 156 nucleotides HMPREF1058_RS16510 and HMPREF1058_RS16505 are separated by 102 nucleotides
HMPREF1058_RS16515: HMPREF1058_RS16515 - GNAT family N-acetyltransferase, at 652,849 to 653,871
_RS16515
HMPREF1058_RS16510: HMPREF1058_RS16510 - methylmalonyl-CoA epimerase, at 654,028 to 654,441
_RS16510
HMPREF1058_RS16505: HMPREF1058_RS16505 - acyl-CoA carboxylase subunit beta, at 654,544 to 656,097
_RS16505
Position (kb) 654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 653.031 kb on - strand, within HMPREF1058_RS16515 at 653.155 kb on - strand, within HMPREF1058_RS16515 at 653.281 kb on + strand, within HMPREF1058_RS16515 at 653.307 kb on - strand, within HMPREF1058_RS16515 at 653.511 kb on - strand, within HMPREF1058_RS16515 at 653.587 kb on - strand, within HMPREF1058_RS16515 at 653.587 kb on - strand, within HMPREF1058_RS16515 at 653.614 kb on + strand, within HMPREF1058_RS16515 at 653.634 kb on + strand, within HMPREF1058_RS16515 at 653.647 kb on + strand, within HMPREF1058_RS16515 at 653.688 kb on + strand, within HMPREF1058_RS16515 at 653.689 kb on - strand, within HMPREF1058_RS16515 at 653.696 kb on - strand, within HMPREF1058_RS16515 at 653.696 kb on - strand, within HMPREF1058_RS16515 at 653.775 kb on + strand at 653.776 kb on - strand at 653.776 kb on - strand at 653.776 kb on - strand at 653.919 kb on - strand at 653.997 kb on + strand at 654.011 kb on - strand at 654.108 kb on - strand, within HMPREF1058_RS16510 at 654.122 kb on - strand, within HMPREF1058_RS16510 at 654.173 kb on + strand, within HMPREF1058_RS16510 at 654.173 kb on + strand, within HMPREF1058_RS16510 at 654.204 kb on + strand, within HMPREF1058_RS16510 at 654.204 kb on + strand, within HMPREF1058_RS16510 at 654.478 kb on + strand at 654.478 kb on + strand at 654.479 kb on - strand at 654.499 kb on - strand at 654.540 kb on + strand at 654.541 kb on - strand at 654.640 kb on - strand at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.795 kb on - strand, within HMPREF1058_RS16505 at 654.897 kb on + strand, within HMPREF1058_RS16505 at 654.898 kb on - strand, within HMPREF1058_RS16505 at 655.069 kb on + strand, within HMPREF1058_RS16505 at 655.118 kb on - strand, within HMPREF1058_RS16505 at 655.118 kb on - strand, within HMPREF1058_RS16505 at 655.119 kb on + strand, within HMPREF1058_RS16505 at 655.119 kb on + strand, within HMPREF1058_RS16505 at 655.120 kb on - strand, within HMPREF1058_RS16505 at 655.120 kb on - strand, within HMPREF1058_RS16505 at 655.137 kb on + strand, within HMPREF1058_RS16505 at 655.278 kb on - strand, within HMPREF1058_RS16505 at 655.283 kb on - strand, within HMPREF1058_RS16505 at 655.319 kb on + strand, within HMPREF1058_RS16505 at 655.319 kb on + strand at 655.394 kb on - strand, within HMPREF1058_RS16505 at 655.398 kb on + strand, within HMPREF1058_RS16505 at 655.399 kb on - strand, within HMPREF1058_RS16505 at 655.399 kb on - strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.403 kb on - strand, within HMPREF1058_RS16505 at 655.425 kb on - strand, within HMPREF1058_RS16505
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 653,031 - HMPREF1058_RS16515 0.18 -0.2 653,155 - HMPREF1058_RS16515 0.30 -1.1 653,281 + HMPREF1058_RS16515 0.42 +0.6 653,307 - HMPREF1058_RS16515 0.45 +1.9 653,511 - HMPREF1058_RS16515 0.65 -2.5 653,587 - HMPREF1058_RS16515 0.72 -0.9 653,587 - HMPREF1058_RS16515 0.72 -0.6 653,614 + HMPREF1058_RS16515 0.75 +0.6 653,634 + HMPREF1058_RS16515 0.77 -0.2 653,647 + HMPREF1058_RS16515 0.78 -1.7 653,688 + HMPREF1058_RS16515 0.82 -1.7 653,689 - HMPREF1058_RS16515 0.82 +0.2 653,696 - HMPREF1058_RS16515 0.83 -0.1 653,696 - HMPREF1058_RS16515 0.83 +1.3 653,775 + -0.0 653,776 - -1.3 653,776 - -0.3 653,776 - +2.3 653,919 - -0.2 653,997 + -1.3 654,011 - -1.0 654,108 - HMPREF1058_RS16510 0.19 -0.3 654,122 - HMPREF1058_RS16510 0.23 -0.3 654,173 + HMPREF1058_RS16510 0.35 -2.3 654,173 + HMPREF1058_RS16510 0.35 -2.0 654,204 + HMPREF1058_RS16510 0.43 -2.1 654,204 + HMPREF1058_RS16510 0.43 -2.4 654,478 + +0.8 654,478 + +0.5 654,479 - +0.3 654,499 - -1.5 654,540 + -0.3 654,541 - -0.3 654,640 - -1.3 654,794 + HMPREF1058_RS16505 0.16 -0.3 654,794 + HMPREF1058_RS16505 0.16 -0.3 654,794 + HMPREF1058_RS16505 0.16 -2.8 654,795 - HMPREF1058_RS16505 0.16 -0.7 654,897 + HMPREF1058_RS16505 0.23 -1.0 654,898 - HMPREF1058_RS16505 0.23 -2.9 655,069 + HMPREF1058_RS16505 0.34 -2.4 655,118 - HMPREF1058_RS16505 0.37 -0.3 655,118 - HMPREF1058_RS16505 0.37 -0.7 655,119 + HMPREF1058_RS16505 0.37 -1.7 655,119 + HMPREF1058_RS16505 0.37 -0.3 655,120 - HMPREF1058_RS16505 0.37 -2.6 655,120 - HMPREF1058_RS16505 0.37 -2.4 655,137 + HMPREF1058_RS16505 0.38 -0.7 655,278 - HMPREF1058_RS16505 0.47 -2.4 655,283 - HMPREF1058_RS16505 0.48 -2.0 655,319 + HMPREF1058_RS16505 0.50 -2.0 655,319 + +1.3 655,394 - HMPREF1058_RS16505 0.55 -1.7 655,398 + HMPREF1058_RS16505 0.55 -0.3 655,399 - HMPREF1058_RS16505 0.55 -1.5 655,399 - HMPREF1058_RS16505 0.55 -2.5 655,402 + HMPREF1058_RS16505 0.55 -0.7 655,402 + HMPREF1058_RS16505 0.55 -1.0 655,402 + HMPREF1058_RS16505 0.55 +0.3 655,403 - HMPREF1058_RS16505 0.55 +1.3 655,425 - HMPREF1058_RS16505 0.57 -1.0
Or see this region's nucleotide sequence