Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15665 and HMPREF1058_RS15660 are separated by 40 nucleotides HMPREF1058_RS15660 and HMPREF1058_RS15655 are separated by 196 nucleotides
HMPREF1058_RS15665: HMPREF1058_RS15665 - MFS transporter, at 861,806 to 863,146
_RS15665
HMPREF1058_RS15660: HMPREF1058_RS15660 - galactokinase, at 863,187 to 864,341
_RS15660
HMPREF1058_RS15655: HMPREF1058_RS15655 - galactose mutarotase, at 864,538 to 865,692
_RS15655
Position (kb) 863
864
865 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 862.197 kb on + strand, within HMPREF1058_RS15665 at 862.201 kb on + strand, within HMPREF1058_RS15665 at 862.374 kb on + strand, within HMPREF1058_RS15665 at 862.375 kb on - strand, within HMPREF1058_RS15665 at 862.516 kb on + strand at 862.524 kb on + strand, within HMPREF1058_RS15665 at 862.524 kb on + strand, within HMPREF1058_RS15665 at 862.530 kb on + strand, within HMPREF1058_RS15665 at 862.548 kb on - strand, within HMPREF1058_RS15665 at 862.551 kb on + strand, within HMPREF1058_RS15665 at 862.552 kb on - strand, within HMPREF1058_RS15665 at 862.589 kb on + strand, within HMPREF1058_RS15665 at 862.655 kb on - strand, within HMPREF1058_RS15665 at 862.667 kb on + strand at 862.825 kb on + strand, within HMPREF1058_RS15665 at 863.048 kb on - strand at 863.096 kb on + strand at 863.096 kb on + strand at 863.151 kb on - strand at 863.163 kb on + strand at 863.164 kb on - strand at 863.177 kb on + strand at 863.194 kb on + strand at 863.194 kb on + strand at 863.194 kb on + strand at 863.195 kb on - strand at 863.195 kb on - strand at 863.195 kb on - strand at 863.199 kb on + strand at 863.199 kb on + strand at 863.203 kb on + strand at 863.249 kb on - strand at 863.251 kb on - strand at 863.271 kb on - strand at 863.277 kb on - strand at 863.326 kb on + strand, within HMPREF1058_RS15660 at 863.330 kb on + strand, within HMPREF1058_RS15660 at 863.336 kb on + strand, within HMPREF1058_RS15660 at 863.375 kb on - strand, within HMPREF1058_RS15660 at 863.407 kb on + strand, within HMPREF1058_RS15660 at 863.407 kb on + strand, within HMPREF1058_RS15660 at 863.407 kb on + strand, within HMPREF1058_RS15660 at 863.408 kb on - strand, within HMPREF1058_RS15660 at 863.460 kb on - strand, within HMPREF1058_RS15660 at 863.460 kb on - strand, within HMPREF1058_RS15660 at 863.553 kb on - strand, within HMPREF1058_RS15660 at 863.579 kb on + strand, within HMPREF1058_RS15660 at 863.580 kb on - strand, within HMPREF1058_RS15660 at 863.584 kb on - strand, within HMPREF1058_RS15660 at 863.648 kb on - strand, within HMPREF1058_RS15660 at 863.671 kb on - strand, within HMPREF1058_RS15660 at 863.671 kb on - strand, within HMPREF1058_RS15660 at 863.681 kb on - strand, within HMPREF1058_RS15660 at 863.770 kb on - strand, within HMPREF1058_RS15660 at 863.770 kb on - strand, within HMPREF1058_RS15660 at 863.930 kb on + strand, within HMPREF1058_RS15660 at 863.979 kb on + strand, within HMPREF1058_RS15660 at 863.979 kb on + strand, within HMPREF1058_RS15660 at 863.981 kb on + strand, within HMPREF1058_RS15660 at 863.981 kb on + strand, within HMPREF1058_RS15660 at 863.994 kb on + strand, within HMPREF1058_RS15660 at 864.019 kb on + strand, within HMPREF1058_RS15660 at 864.065 kb on - strand, within HMPREF1058_RS15660 at 864.115 kb on + strand, within HMPREF1058_RS15660 at 864.115 kb on + strand, within HMPREF1058_RS15660 at 864.232 kb on + strand at 864.308 kb on - strand at 864.337 kb on + strand at 864.365 kb on + strand at 864.451 kb on + strand at 864.451 kb on + strand at 864.508 kb on + strand at 864.517 kb on - strand at 864.532 kb on + strand at 864.534 kb on + strand at 864.652 kb on - strand at 864.725 kb on + strand, within HMPREF1058_RS15655 at 864.725 kb on + strand, within HMPREF1058_RS15655 at 864.725 kb on + strand, within HMPREF1058_RS15655 at 864.750 kb on + strand, within HMPREF1058_RS15655 at 864.756 kb on - strand, within HMPREF1058_RS15655 at 864.760 kb on - strand, within HMPREF1058_RS15655 at 864.789 kb on - strand, within HMPREF1058_RS15655 at 864.798 kb on - strand, within HMPREF1058_RS15655 at 864.885 kb on + strand, within HMPREF1058_RS15655 at 864.885 kb on + strand, within HMPREF1058_RS15655 at 864.886 kb on - strand, within HMPREF1058_RS15655 at 864.963 kb on + strand, within HMPREF1058_RS15655 at 865.012 kb on - strand, within HMPREF1058_RS15655 at 865.015 kb on - strand, within HMPREF1058_RS15655 at 865.084 kb on + strand, within HMPREF1058_RS15655 at 865.084 kb on + strand, within HMPREF1058_RS15655 at 865.084 kb on + strand, within HMPREF1058_RS15655 at 865.084 kb on + strand, within HMPREF1058_RS15655 at 865.084 kb on + strand, within HMPREF1058_RS15655 at 865.085 kb on - strand, within HMPREF1058_RS15655 at 865.085 kb on - strand, within HMPREF1058_RS15655
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 862,197 + HMPREF1058_RS15665 0.29 -2.9 862,201 + HMPREF1058_RS15665 0.29 -0.1 862,374 + HMPREF1058_RS15665 0.42 -0.1 862,375 - HMPREF1058_RS15665 0.42 -0.4 862,516 + -1.5 862,524 + HMPREF1058_RS15665 0.54 -2.1 862,524 + HMPREF1058_RS15665 0.54 -0.6 862,530 + HMPREF1058_RS15665 0.54 -1.8 862,548 - HMPREF1058_RS15665 0.55 -0.5 862,551 + HMPREF1058_RS15665 0.56 -0.8 862,552 - HMPREF1058_RS15665 0.56 +0.3 862,589 + HMPREF1058_RS15665 0.58 -2.1 862,655 - HMPREF1058_RS15665 0.63 -1.3 862,667 + +1.6 862,825 + HMPREF1058_RS15665 0.76 +1.0 863,048 - -2.1 863,096 + -0.3 863,096 + -0.7 863,151 - -1.7 863,163 + -1.7 863,164 - -0.7 863,177 + -1.2 863,194 + -3.0 863,194 + -1.8 863,194 + -1.3 863,195 - -2.5 863,195 - -3.4 863,195 - -2.0 863,199 + -0.5 863,199 + -3.4 863,203 + -1.5 863,249 - -3.9 863,251 - -2.9 863,271 - -2.2 863,277 - -1.2 863,326 + HMPREF1058_RS15660 0.12 -0.7 863,330 + HMPREF1058_RS15660 0.12 -2.7 863,336 + HMPREF1058_RS15660 0.13 -1.8 863,375 - HMPREF1058_RS15660 0.16 -1.3 863,407 + HMPREF1058_RS15660 0.19 -2.2 863,407 + HMPREF1058_RS15660 0.19 -1.9 863,407 + HMPREF1058_RS15660 0.19 -2.7 863,408 - HMPREF1058_RS15660 0.19 -1.4 863,460 - HMPREF1058_RS15660 0.24 -0.7 863,460 - HMPREF1058_RS15660 0.24 -1.2 863,553 - HMPREF1058_RS15660 0.32 -3.5 863,579 + HMPREF1058_RS15660 0.34 -2.3 863,580 - HMPREF1058_RS15660 0.34 -0.4 863,584 - HMPREF1058_RS15660 0.34 -3.7 863,648 - HMPREF1058_RS15660 0.40 -1.3 863,671 - HMPREF1058_RS15660 0.42 -2.8 863,671 - HMPREF1058_RS15660 0.42 -2.4 863,681 - HMPREF1058_RS15660 0.43 -2.2 863,770 - HMPREF1058_RS15660 0.50 -3.2 863,770 - HMPREF1058_RS15660 0.50 -4.1 863,930 + HMPREF1058_RS15660 0.64 -2.4 863,979 + HMPREF1058_RS15660 0.69 -1.1 863,979 + HMPREF1058_RS15660 0.69 -1.6 863,981 + HMPREF1058_RS15660 0.69 -4.1 863,981 + HMPREF1058_RS15660 0.69 -2.4 863,994 + HMPREF1058_RS15660 0.70 -4.1 864,019 + HMPREF1058_RS15660 0.72 -1.9 864,065 - HMPREF1058_RS15660 0.76 -2.5 864,115 + HMPREF1058_RS15660 0.80 -2.0 864,115 + HMPREF1058_RS15660 0.80 -0.5 864,232 + -2.3 864,308 - -0.7 864,337 + -1.4 864,365 + +0.6 864,451 + -1.7 864,451 + -2.1 864,508 + -0.3 864,517 - -3.2 864,532 + -2.2 864,534 + -1.6 864,652 - -2.3 864,725 + HMPREF1058_RS15655 0.16 -1.8 864,725 + HMPREF1058_RS15655 0.16 -3.9 864,725 + HMPREF1058_RS15655 0.16 -2.5 864,750 + HMPREF1058_RS15655 0.18 -3.6 864,756 - HMPREF1058_RS15655 0.19 -3.7 864,760 - HMPREF1058_RS15655 0.19 -5.1 864,789 - HMPREF1058_RS15655 0.22 -3.9 864,798 - HMPREF1058_RS15655 0.23 -3.7 864,885 + HMPREF1058_RS15655 0.30 -0.7 864,885 + HMPREF1058_RS15655 0.30 -2.7 864,886 - HMPREF1058_RS15655 0.30 -2.4 864,963 + HMPREF1058_RS15655 0.37 -3.1 865,012 - HMPREF1058_RS15655 0.41 -2.7 865,015 - HMPREF1058_RS15655 0.41 -2.7 865,084 + HMPREF1058_RS15655 0.47 -3.3 865,084 + HMPREF1058_RS15655 0.47 -3.4 865,084 + HMPREF1058_RS15655 0.47 -2.4 865,084 + HMPREF1058_RS15655 0.47 -2.3 865,084 + HMPREF1058_RS15655 0.47 -3.1 865,085 - HMPREF1058_RS15655 0.47 -3.9 865,085 - HMPREF1058_RS15655 0.47 -5.6
Or see this region's nucleotide sequence