Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15655 and HMPREF1058_RS15650 are separated by 26 nucleotides HMPREF1058_RS15650 and HMPREF1058_RS15645 are separated by 75 nucleotides HMPREF1058_RS15645 and HMPREF1058_RS15640 are separated by 70 nucleotides
HMPREF1058_RS15655: HMPREF1058_RS15655 - galactose mutarotase, at 864,538 to 865,692
_RS15655
HMPREF1058_RS15650: HMPREF1058_RS15650 - sodium:solute symporter, at 865,719 to 867,461
_RS15650
HMPREF1058_RS15645: HMPREF1058_RS15645 - NUDIX hydrolase, at 867,537 to 868,214
_RS15645
HMPREF1058_RS15640: HMPREF1058_RS15640 - L-ribulose-5-phosphate 4-epimerase, at 868,285 to 868,971
_RS15640
Position (kb) 865
866
867
868 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 864.725 kb on + strand, within HMPREF1058_RS15655 at 864.725 kb on + strand, within HMPREF1058_RS15655 at 864.725 kb on + strand, within HMPREF1058_RS15655 at 864.750 kb on + strand, within HMPREF1058_RS15655 at 864.756 kb on - strand, within HMPREF1058_RS15655 at 864.760 kb on - strand, within HMPREF1058_RS15655 at 864.789 kb on - strand, within HMPREF1058_RS15655 at 864.798 kb on - strand, within HMPREF1058_RS15655 at 864.885 kb on + strand, within HMPREF1058_RS15655 at 864.885 kb on + strand, within HMPREF1058_RS15655 at 864.886 kb on - strand, within HMPREF1058_RS15655 at 864.963 kb on + strand, within HMPREF1058_RS15655 at 865.012 kb on - strand, within HMPREF1058_RS15655 at 865.015 kb on - strand, within HMPREF1058_RS15655 at 865.084 kb on + strand, within HMPREF1058_RS15655 at 865.084 kb on + strand, within HMPREF1058_RS15655 at 865.084 kb on + strand, within HMPREF1058_RS15655 at 865.084 kb on + strand, within HMPREF1058_RS15655 at 865.084 kb on + strand, within HMPREF1058_RS15655 at 865.085 kb on - strand, within HMPREF1058_RS15655 at 865.085 kb on - strand, within HMPREF1058_RS15655 at 865.472 kb on + strand, within HMPREF1058_RS15655 at 865.472 kb on + strand, within HMPREF1058_RS15655 at 865.472 kb on + strand, within HMPREF1058_RS15655 at 865.472 kb on + strand, within HMPREF1058_RS15655 at 865.473 kb on - strand, within HMPREF1058_RS15655 at 865.479 kb on + strand, within HMPREF1058_RS15655 at 865.480 kb on - strand, within HMPREF1058_RS15655 at 865.548 kb on + strand, within HMPREF1058_RS15655 at 865.548 kb on + strand, within HMPREF1058_RS15655 at 865.549 kb on - strand, within HMPREF1058_RS15655 at 865.628 kb on + strand at 865.651 kb on + strand at 865.652 kb on - strand at 865.652 kb on - strand at 865.665 kb on + strand at 865.665 kb on + strand at 865.666 kb on - strand at 865.704 kb on + strand at 865.709 kb on - strand at 865.716 kb on - strand at 865.762 kb on + strand at 865.780 kb on + strand at 865.781 kb on - strand at 866.034 kb on + strand, within HMPREF1058_RS15650 at 866.044 kb on + strand, within HMPREF1058_RS15650 at 866.099 kb on + strand, within HMPREF1058_RS15650 at 866.145 kb on + strand, within HMPREF1058_RS15650 at 866.146 kb on - strand, within HMPREF1058_RS15650 at 866.176 kb on - strand, within HMPREF1058_RS15650 at 866.203 kb on + strand, within HMPREF1058_RS15650 at 866.241 kb on - strand, within HMPREF1058_RS15650 at 866.376 kb on - strand, within HMPREF1058_RS15650 at 866.378 kb on + strand, within HMPREF1058_RS15650 at 866.378 kb on + strand, within HMPREF1058_RS15650 at 866.379 kb on - strand, within HMPREF1058_RS15650 at 866.466 kb on - strand, within HMPREF1058_RS15650 at 866.497 kb on - strand, within HMPREF1058_RS15650 at 866.645 kb on + strand, within HMPREF1058_RS15650 at 866.646 kb on - strand, within HMPREF1058_RS15650 at 866.646 kb on - strand, within HMPREF1058_RS15650 at 866.708 kb on - strand, within HMPREF1058_RS15650 at 866.750 kb on + strand, within HMPREF1058_RS15650 at 866.770 kb on + strand, within HMPREF1058_RS15650 at 866.812 kb on + strand, within HMPREF1058_RS15650 at 866.813 kb on - strand, within HMPREF1058_RS15650 at 866.862 kb on - strand, within HMPREF1058_RS15650 at 866.927 kb on + strand, within HMPREF1058_RS15650 at 866.931 kb on + strand, within HMPREF1058_RS15650 at 866.932 kb on - strand, within HMPREF1058_RS15650 at 866.932 kb on - strand, within HMPREF1058_RS15650 at 866.960 kb on - strand, within HMPREF1058_RS15650 at 866.966 kb on - strand, within HMPREF1058_RS15650 at 867.070 kb on + strand, within HMPREF1058_RS15650 at 867.083 kb on + strand, within HMPREF1058_RS15650 at 867.084 kb on - strand, within HMPREF1058_RS15650 at 867.133 kb on + strand, within HMPREF1058_RS15650 at 867.143 kb on - strand, within HMPREF1058_RS15650 at 867.167 kb on + strand, within HMPREF1058_RS15650 at 867.168 kb on - strand, within HMPREF1058_RS15650 at 867.263 kb on - strand, within HMPREF1058_RS15650 at 867.274 kb on + strand, within HMPREF1058_RS15650 at 867.275 kb on - strand, within HMPREF1058_RS15650 at 867.275 kb on - strand, within HMPREF1058_RS15650 at 867.275 kb on - strand, within HMPREF1058_RS15650 at 867.289 kb on + strand at 867.301 kb on + strand at 867.302 kb on - strand at 867.363 kb on + strand at 867.364 kb on - strand at 867.422 kb on - strand at 867.422 kb on - strand at 867.444 kb on + strand at 867.444 kb on + strand at 867.445 kb on - strand at 867.445 kb on - strand at 867.445 kb on - strand at 867.459 kb on + strand at 867.505 kb on - strand at 867.546 kb on + strand at 867.549 kb on + strand at 867.575 kb on - strand at 867.581 kb on - strand at 867.617 kb on - strand, within HMPREF1058_RS15645 at 867.758 kb on + strand, within HMPREF1058_RS15645 at 867.758 kb on + strand, within HMPREF1058_RS15645 at 867.759 kb on - strand, within HMPREF1058_RS15645 at 867.825 kb on + strand, within HMPREF1058_RS15645 at 867.826 kb on - strand, within HMPREF1058_RS15645 at 867.979 kb on - strand, within HMPREF1058_RS15645 at 867.979 kb on - strand, within HMPREF1058_RS15645 at 867.979 kb on - strand, within HMPREF1058_RS15645 at 868.040 kb on - strand, within HMPREF1058_RS15645 at 868.040 kb on - strand, within HMPREF1058_RS15645 at 868.053 kb on + strand, within HMPREF1058_RS15645 at 868.158 kb on + strand at 868.159 kb on - strand at 868.159 kb on - strand at 868.173 kb on - strand at 868.254 kb on - strand at 868.401 kb on - strand, within HMPREF1058_RS15640 at 868.426 kb on + strand, within HMPREF1058_RS15640 at 868.427 kb on - strand, within HMPREF1058_RS15640
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 864,725 + HMPREF1058_RS15655 0.16 -1.8 864,725 + HMPREF1058_RS15655 0.16 -3.9 864,725 + HMPREF1058_RS15655 0.16 -2.5 864,750 + HMPREF1058_RS15655 0.18 -3.6 864,756 - HMPREF1058_RS15655 0.19 -3.7 864,760 - HMPREF1058_RS15655 0.19 -5.1 864,789 - HMPREF1058_RS15655 0.22 -3.9 864,798 - HMPREF1058_RS15655 0.23 -3.7 864,885 + HMPREF1058_RS15655 0.30 -0.7 864,885 + HMPREF1058_RS15655 0.30 -2.7 864,886 - HMPREF1058_RS15655 0.30 -2.4 864,963 + HMPREF1058_RS15655 0.37 -3.1 865,012 - HMPREF1058_RS15655 0.41 -2.7 865,015 - HMPREF1058_RS15655 0.41 -2.7 865,084 + HMPREF1058_RS15655 0.47 -3.3 865,084 + HMPREF1058_RS15655 0.47 -3.4 865,084 + HMPREF1058_RS15655 0.47 -2.4 865,084 + HMPREF1058_RS15655 0.47 -2.3 865,084 + HMPREF1058_RS15655 0.47 -3.1 865,085 - HMPREF1058_RS15655 0.47 -3.9 865,085 - HMPREF1058_RS15655 0.47 -5.6 865,472 + HMPREF1058_RS15655 0.81 -1.1 865,472 + HMPREF1058_RS15655 0.81 -3.1 865,472 + HMPREF1058_RS15655 0.81 +2.3 865,472 + HMPREF1058_RS15655 0.81 -1.1 865,473 - HMPREF1058_RS15655 0.81 -3.5 865,479 + HMPREF1058_RS15655 0.81 -2.5 865,480 - HMPREF1058_RS15655 0.82 -3.4 865,548 + HMPREF1058_RS15655 0.87 -0.3 865,548 + HMPREF1058_RS15655 0.87 -2.3 865,549 - HMPREF1058_RS15655 0.88 -2.3 865,628 + -1.5 865,651 + -3.9 865,652 - -3.4 865,652 - -2.9 865,665 + -0.1 865,665 + -2.9 865,666 - -2.8 865,704 + -1.9 865,709 - -2.7 865,716 - -3.2 865,762 + -2.8 865,780 + -3.6 865,781 - -2.5 866,034 + HMPREF1058_RS15650 0.18 -1.7 866,044 + HMPREF1058_RS15650 0.19 -1.5 866,099 + HMPREF1058_RS15650 0.22 -2.7 866,145 + HMPREF1058_RS15650 0.24 -4.3 866,146 - HMPREF1058_RS15650 0.24 -1.7 866,176 - HMPREF1058_RS15650 0.26 -1.7 866,203 + HMPREF1058_RS15650 0.28 +0.3 866,241 - HMPREF1058_RS15650 0.30 -3.7 866,376 - HMPREF1058_RS15650 0.38 +0.3 866,378 + HMPREF1058_RS15650 0.38 -2.1 866,378 + HMPREF1058_RS15650 0.38 -2.8 866,379 - HMPREF1058_RS15650 0.38 -3.9 866,466 - HMPREF1058_RS15650 0.43 -4.2 866,497 - HMPREF1058_RS15650 0.45 -0.5 866,645 + HMPREF1058_RS15650 0.53 -3.6 866,646 - HMPREF1058_RS15650 0.53 -5.0 866,646 - HMPREF1058_RS15650 0.53 -3.4 866,708 - HMPREF1058_RS15650 0.57 -2.8 866,750 + HMPREF1058_RS15650 0.59 -2.9 866,770 + HMPREF1058_RS15650 0.60 -0.7 866,812 + HMPREF1058_RS15650 0.63 -1.4 866,813 - HMPREF1058_RS15650 0.63 -3.6 866,862 - HMPREF1058_RS15650 0.66 -1.7 866,927 + HMPREF1058_RS15650 0.69 +0.3 866,931 + HMPREF1058_RS15650 0.70 -3.5 866,932 - HMPREF1058_RS15650 0.70 +0.3 866,932 - HMPREF1058_RS15650 0.70 -4.9 866,960 - HMPREF1058_RS15650 0.71 +0.3 866,966 - HMPREF1058_RS15650 0.72 -4.4 867,070 + HMPREF1058_RS15650 0.78 -2.4 867,083 + HMPREF1058_RS15650 0.78 -4.2 867,084 - HMPREF1058_RS15650 0.78 -4.5 867,133 + HMPREF1058_RS15650 0.81 -0.7 867,143 - HMPREF1058_RS15650 0.82 -0.7 867,167 + HMPREF1058_RS15650 0.83 -2.1 867,168 - HMPREF1058_RS15650 0.83 -0.7 867,263 - HMPREF1058_RS15650 0.89 -3.0 867,274 + HMPREF1058_RS15650 0.89 -1.3 867,275 - HMPREF1058_RS15650 0.89 -5.1 867,275 - HMPREF1058_RS15650 0.89 -2.9 867,275 - HMPREF1058_RS15650 0.89 -2.3 867,289 + -0.3 867,301 + -2.6 867,302 - -0.3 867,363 + -2.4 867,364 - -2.8 867,422 - -1.0 867,422 - -1.3 867,444 + -1.7 867,444 + -0.3 867,445 - -2.4 867,445 - -3.2 867,445 - -2.4 867,459 + -3.5 867,505 - -3.1 867,546 + +0.5 867,549 + -1.1 867,575 - -3.9 867,581 - -3.1 867,617 - HMPREF1058_RS15645 0.12 -1.8 867,758 + HMPREF1058_RS15645 0.33 +1.1 867,758 + HMPREF1058_RS15645 0.33 +0.8 867,759 - HMPREF1058_RS15645 0.33 -3.3 867,825 + HMPREF1058_RS15645 0.42 -0.5 867,826 - HMPREF1058_RS15645 0.43 -0.7 867,979 - HMPREF1058_RS15645 0.65 -3.2 867,979 - HMPREF1058_RS15645 0.65 -3.9 867,979 - HMPREF1058_RS15645 0.65 -3.3 868,040 - HMPREF1058_RS15645 0.74 -2.3 868,040 - HMPREF1058_RS15645 0.74 -3.2 868,053 + HMPREF1058_RS15645 0.76 -0.5 868,158 + +1.3 868,159 - -3.7 868,159 - -2.4 868,173 - -4.0 868,254 - -2.6 868,401 - HMPREF1058_RS15640 0.17 -1.7 868,426 + HMPREF1058_RS15640 0.21 -2.3 868,427 - HMPREF1058_RS15640 0.21 -4.7
Or see this region's nucleotide sequence