Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15645 and HMPREF1058_RS15640 are separated by 70 nucleotides HMPREF1058_RS15640 and HMPREF1058_RS15635 are separated by 39 nucleotides HMPREF1058_RS15635 and HMPREF1058_RS15630 are separated by 102 nucleotides
HMPREF1058_RS15645: HMPREF1058_RS15645 - NUDIX hydrolase, at 867,537 to 868,214
_RS15645
HMPREF1058_RS15640: HMPREF1058_RS15640 - L-ribulose-5-phosphate 4-epimerase, at 868,285 to 868,971
_RS15640
HMPREF1058_RS15635: HMPREF1058_RS15635 - L-arabinose isomerase, at 869,011 to 870,540
_RS15635
HMPREF1058_RS15630: HMPREF1058_RS15630 - FGGY-family carbohydrate kinase, at 870,643 to 872,241
_RS15630
Position (kb) 869
870
871 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 868.040 kb on - strand, within HMPREF1058_RS15645 at 868.040 kb on - strand, within HMPREF1058_RS15645 at 868.053 kb on + strand, within HMPREF1058_RS15645 at 868.158 kb on + strand at 868.159 kb on - strand at 868.159 kb on - strand at 868.173 kb on - strand at 868.254 kb on - strand at 868.401 kb on - strand, within HMPREF1058_RS15640 at 868.426 kb on + strand, within HMPREF1058_RS15640 at 868.427 kb on - strand, within HMPREF1058_RS15640 at 868.524 kb on - strand, within HMPREF1058_RS15640 at 868.530 kb on - strand, within HMPREF1058_RS15640 at 868.533 kb on + strand, within HMPREF1058_RS15640 at 868.562 kb on + strand, within HMPREF1058_RS15640 at 868.563 kb on - strand, within HMPREF1058_RS15640 at 868.567 kb on - strand, within HMPREF1058_RS15640 at 868.579 kb on + strand, within HMPREF1058_RS15640 at 868.580 kb on - strand, within HMPREF1058_RS15640 at 868.580 kb on - strand, within HMPREF1058_RS15640 at 868.580 kb on - strand, within HMPREF1058_RS15640 at 868.580 kb on - strand, within HMPREF1058_RS15640 at 868.580 kb on - strand, within HMPREF1058_RS15640 at 868.665 kb on + strand, within HMPREF1058_RS15640 at 868.692 kb on - strand, within HMPREF1058_RS15640 at 868.757 kb on + strand, within HMPREF1058_RS15640 at 868.761 kb on + strand, within HMPREF1058_RS15640 at 868.776 kb on - strand, within HMPREF1058_RS15640 at 868.827 kb on - strand, within HMPREF1058_RS15640 at 868.831 kb on - strand, within HMPREF1058_RS15640 at 868.896 kb on - strand, within HMPREF1058_RS15640 at 868.954 kb on + strand at 868.985 kb on + strand at 868.997 kb on + strand at 869.004 kb on + strand at 869.040 kb on - strand at 869.086 kb on - strand at 869.088 kb on - strand at 869.156 kb on + strand at 869.160 kb on - strand at 869.161 kb on + strand at 869.163 kb on + strand at 869.163 kb on + strand at 869.163 kb on + strand at 869.184 kb on + strand, within HMPREF1058_RS15635 at 869.185 kb on - strand, within HMPREF1058_RS15635 at 869.185 kb on - strand, within HMPREF1058_RS15635 at 869.337 kb on + strand, within HMPREF1058_RS15635 at 869.419 kb on - strand, within HMPREF1058_RS15635 at 869.419 kb on - strand, within HMPREF1058_RS15635 at 869.419 kb on - strand at 869.456 kb on + strand, within HMPREF1058_RS15635 at 869.456 kb on + strand, within HMPREF1058_RS15635 at 869.457 kb on - strand, within HMPREF1058_RS15635 at 869.457 kb on - strand, within HMPREF1058_RS15635 at 869.538 kb on + strand, within HMPREF1058_RS15635 at 869.576 kb on + strand, within HMPREF1058_RS15635 at 869.577 kb on - strand, within HMPREF1058_RS15635 at 869.690 kb on + strand, within HMPREF1058_RS15635 at 869.703 kb on - strand, within HMPREF1058_RS15635 at 869.722 kb on + strand, within HMPREF1058_RS15635 at 869.741 kb on + strand, within HMPREF1058_RS15635 at 869.847 kb on + strand, within HMPREF1058_RS15635 at 869.848 kb on - strand, within HMPREF1058_RS15635 at 869.881 kb on + strand, within HMPREF1058_RS15635 at 869.882 kb on - strand, within HMPREF1058_RS15635 at 870.035 kb on - strand, within HMPREF1058_RS15635 at 870.081 kb on + strand, within HMPREF1058_RS15635 at 870.102 kb on + strand, within HMPREF1058_RS15635 at 870.131 kb on + strand, within HMPREF1058_RS15635 at 870.146 kb on + strand, within HMPREF1058_RS15635 at 870.146 kb on + strand, within HMPREF1058_RS15635 at 870.146 kb on + strand, within HMPREF1058_RS15635 at 870.146 kb on + strand, within HMPREF1058_RS15635 at 870.146 kb on + strand, within HMPREF1058_RS15635 at 870.147 kb on - strand, within HMPREF1058_RS15635 at 870.147 kb on - strand, within HMPREF1058_RS15635 at 870.147 kb on - strand, within HMPREF1058_RS15635 at 870.179 kb on + strand, within HMPREF1058_RS15635 at 870.195 kb on - strand, within HMPREF1058_RS15635 at 870.327 kb on + strand, within HMPREF1058_RS15635 at 870.392 kb on - strand at 870.465 kb on + strand at 870.466 kb on - strand at 870.469 kb on + strand at 870.469 kb on - strand at 870.515 kb on - strand at 870.516 kb on + strand at 870.599 kb on - strand at 870.604 kb on - strand at 870.612 kb on + strand at 870.640 kb on - strand at 870.684 kb on + strand at 870.690 kb on - strand at 870.696 kb on - strand at 870.820 kb on - strand, within HMPREF1058_RS15630 at 870.845 kb on - strand, within HMPREF1058_RS15630 at 870.875 kb on + strand, within HMPREF1058_RS15630 at 870.876 kb on - strand, within HMPREF1058_RS15630 at 870.877 kb on + strand, within HMPREF1058_RS15630 at 870.937 kb on - strand, within HMPREF1058_RS15630 at 870.991 kb on - strand, within HMPREF1058_RS15630 at 871.038 kb on + strand, within HMPREF1058_RS15630 at 871.038 kb on + strand, within HMPREF1058_RS15630 at 871.038 kb on + strand, within HMPREF1058_RS15630 at 871.038 kb on + strand, within HMPREF1058_RS15630 at 871.039 kb on - strand, within HMPREF1058_RS15630 at 871.039 kb on - strand, within HMPREF1058_RS15630 at 871.070 kb on + strand, within HMPREF1058_RS15630 at 871.081 kb on - strand, within HMPREF1058_RS15630 at 871.103 kb on + strand, within HMPREF1058_RS15630 at 871.104 kb on - strand, within HMPREF1058_RS15630 at 871.179 kb on - strand, within HMPREF1058_RS15630 at 871.394 kb on + strand at 871.473 kb on - strand, within HMPREF1058_RS15630 at 871.505 kb on + strand, within HMPREF1058_RS15630
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 868,040 - HMPREF1058_RS15645 0.74 -2.3 868,040 - HMPREF1058_RS15645 0.74 -3.2 868,053 + HMPREF1058_RS15645 0.76 -0.5 868,158 + +1.3 868,159 - -3.7 868,159 - -2.4 868,173 - -4.0 868,254 - -2.6 868,401 - HMPREF1058_RS15640 0.17 -1.7 868,426 + HMPREF1058_RS15640 0.21 -2.3 868,427 - HMPREF1058_RS15640 0.21 -4.7 868,524 - HMPREF1058_RS15640 0.35 -2.9 868,530 - HMPREF1058_RS15640 0.36 -3.0 868,533 + HMPREF1058_RS15640 0.36 -3.0 868,562 + HMPREF1058_RS15640 0.40 -3.9 868,563 - HMPREF1058_RS15640 0.40 -3.3 868,567 - HMPREF1058_RS15640 0.41 -3.3 868,579 + HMPREF1058_RS15640 0.43 -4.4 868,580 - HMPREF1058_RS15640 0.43 -4.3 868,580 - HMPREF1058_RS15640 0.43 -5.0 868,580 - HMPREF1058_RS15640 0.43 -4.6 868,580 - HMPREF1058_RS15640 0.43 -2.0 868,580 - HMPREF1058_RS15640 0.43 -2.9 868,665 + HMPREF1058_RS15640 0.55 -1.0 868,692 - HMPREF1058_RS15640 0.59 -1.9 868,757 + HMPREF1058_RS15640 0.69 -4.0 868,761 + HMPREF1058_RS15640 0.69 -5.2 868,776 - HMPREF1058_RS15640 0.71 -2.4 868,827 - HMPREF1058_RS15640 0.79 -2.8 868,831 - HMPREF1058_RS15640 0.79 -2.3 868,896 - HMPREF1058_RS15640 0.89 -3.9 868,954 + -1.3 868,985 + +0.5 868,997 + -1.3 869,004 + -2.1 869,040 - -4.2 869,086 - -2.2 869,088 - -4.2 869,156 + -2.5 869,160 - -3.2 869,161 + -2.7 869,163 + -4.6 869,163 + -2.0 869,163 + -1.3 869,184 + HMPREF1058_RS15635 0.11 -2.0 869,185 - HMPREF1058_RS15635 0.11 -0.3 869,185 - HMPREF1058_RS15635 0.11 -2.2 869,337 + HMPREF1058_RS15635 0.21 -3.5 869,419 - HMPREF1058_RS15635 0.27 -4.4 869,419 - HMPREF1058_RS15635 0.27 -3.4 869,419 - -1.5 869,456 + HMPREF1058_RS15635 0.29 -3.2 869,456 + HMPREF1058_RS15635 0.29 -2.4 869,457 - HMPREF1058_RS15635 0.29 -3.8 869,457 - HMPREF1058_RS15635 0.29 -5.0 869,538 + HMPREF1058_RS15635 0.34 -3.6 869,576 + HMPREF1058_RS15635 0.37 -1.2 869,577 - HMPREF1058_RS15635 0.37 -3.3 869,690 + HMPREF1058_RS15635 0.44 -4.8 869,703 - HMPREF1058_RS15635 0.45 -4.6 869,722 + HMPREF1058_RS15635 0.46 -2.0 869,741 + HMPREF1058_RS15635 0.48 -4.8 869,847 + HMPREF1058_RS15635 0.55 -1.5 869,848 - HMPREF1058_RS15635 0.55 +0.3 869,881 + HMPREF1058_RS15635 0.57 -4.2 869,882 - HMPREF1058_RS15635 0.57 -1.0 870,035 - HMPREF1058_RS15635 0.67 -5.1 870,081 + HMPREF1058_RS15635 0.70 -3.0 870,102 + HMPREF1058_RS15635 0.71 -3.2 870,131 + HMPREF1058_RS15635 0.73 -0.0 870,146 + HMPREF1058_RS15635 0.74 -3.2 870,146 + HMPREF1058_RS15635 0.74 -1.0 870,146 + HMPREF1058_RS15635 0.74 -2.9 870,146 + HMPREF1058_RS15635 0.74 -3.9 870,146 + HMPREF1058_RS15635 0.74 -5.3 870,147 - HMPREF1058_RS15635 0.74 -5.3 870,147 - HMPREF1058_RS15635 0.74 -2.7 870,147 - HMPREF1058_RS15635 0.74 -2.9 870,179 + HMPREF1058_RS15635 0.76 -0.3 870,195 - HMPREF1058_RS15635 0.77 -5.0 870,327 + HMPREF1058_RS15635 0.86 -2.3 870,392 - -3.9 870,465 + -2.7 870,466 - -2.0 870,469 + -0.7 870,469 - -3.3 870,515 - -2.7 870,516 + -1.4 870,599 - -1.0 870,604 - -4.1 870,612 + +0.2 870,640 - -1.5 870,684 + -1.0 870,690 - -2.0 870,696 - -2.9 870,820 - HMPREF1058_RS15630 0.11 -4.0 870,845 - HMPREF1058_RS15630 0.13 -2.7 870,875 + HMPREF1058_RS15630 0.15 -3.6 870,876 - HMPREF1058_RS15630 0.15 -3.0 870,877 + HMPREF1058_RS15630 0.15 -2.3 870,937 - HMPREF1058_RS15630 0.18 -0.7 870,991 - HMPREF1058_RS15630 0.22 -2.4 871,038 + HMPREF1058_RS15630 0.25 -0.7 871,038 + HMPREF1058_RS15630 0.25 -5.7 871,038 + HMPREF1058_RS15630 0.25 -3.5 871,038 + HMPREF1058_RS15630 0.25 -3.5 871,039 - HMPREF1058_RS15630 0.25 -2.6 871,039 - HMPREF1058_RS15630 0.25 -0.3 871,070 + HMPREF1058_RS15630 0.27 -1.6 871,081 - HMPREF1058_RS15630 0.27 -2.8 871,103 + HMPREF1058_RS15630 0.29 -3.4 871,104 - HMPREF1058_RS15630 0.29 -4.4 871,179 - HMPREF1058_RS15630 0.34 -2.9 871,394 + -1.7 871,473 - HMPREF1058_RS15630 0.52 -4.0 871,505 + HMPREF1058_RS15630 0.54 -3.5
Or see this region's nucleotide sequence