Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15565

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15570 and HMPREF1058_RS15565 are separated by 43 nucleotidesHMPREF1058_RS15565 and HMPREF1058_RS15560 are separated by 375 nucleotides HMPREF1058_RS15570: HMPREF1058_RS15570 - hypothetical protein, at 884,852 to 886,423 _RS15570 HMPREF1058_RS15565: HMPREF1058_RS15565 - hypothetical protein, at 886,467 to 887,867 _RS15565 HMPREF1058_RS15560: HMPREF1058_RS15560 - DsbA family protein, at 888,243 to 888,866 _RS15560 Position (kb) 886 887 888Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 885.474 kb on + strand, within HMPREF1058_RS15570at 885.475 kb on - strand, within HMPREF1058_RS15570at 885.526 kb on + strand, within HMPREF1058_RS15570at 885.527 kb on - strand, within HMPREF1058_RS15570at 885.533 kb on + strand, within HMPREF1058_RS15570at 885.534 kb on - strand, within HMPREF1058_RS15570at 885.560 kb on - strand, within HMPREF1058_RS15570at 885.583 kb on - strand, within HMPREF1058_RS15570at 885.595 kb on + strand, within HMPREF1058_RS15570at 885.595 kb on + strand, within HMPREF1058_RS15570at 885.595 kb on + strand, within HMPREF1058_RS15570at 885.596 kb on - strand, within HMPREF1058_RS15570at 885.642 kb on + strand, within HMPREF1058_RS15570at 885.649 kb on + strand, within HMPREF1058_RS15570at 885.660 kb on + strand, within HMPREF1058_RS15570at 885.673 kb on - strand, within HMPREF1058_RS15570at 885.673 kb on - strand, within HMPREF1058_RS15570at 885.673 kb on - strand, within HMPREF1058_RS15570at 885.673 kb on - strand, within HMPREF1058_RS15570at 885.696 kb on + strand, within HMPREF1058_RS15570at 885.697 kb on - strand, within HMPREF1058_RS15570at 885.704 kb on - strand, within HMPREF1058_RS15570at 885.704 kb on - strand, within HMPREF1058_RS15570at 885.745 kb on + strand, within HMPREF1058_RS15570at 885.773 kb on - strand, within HMPREF1058_RS15570at 885.917 kb on + strand, within HMPREF1058_RS15570at 885.918 kb on - strand, within HMPREF1058_RS15570at 885.918 kb on - strand, within HMPREF1058_RS15570at 885.918 kb on - strand, within HMPREF1058_RS15570at 886.039 kb on + strand, within HMPREF1058_RS15570at 886.079 kb on - strand, within HMPREF1058_RS15570at 886.079 kb on - strand, within HMPREF1058_RS15570at 886.093 kb on + strand, within HMPREF1058_RS15570at 886.093 kb on + strand, within HMPREF1058_RS15570at 886.100 kb on - strand, within HMPREF1058_RS15570at 886.101 kb on - strand, within HMPREF1058_RS15570at 886.189 kb on + strand, within HMPREF1058_RS15570at 886.263 kb on - strand, within HMPREF1058_RS15570at 886.263 kb on - strand, within HMPREF1058_RS15570at 886.263 kb on - strand, within HMPREF1058_RS15570at 886.263 kb on - strand, within HMPREF1058_RS15570at 886.265 kb on - strand, within HMPREF1058_RS15570at 886.265 kb on - strand, within HMPREF1058_RS15570at 886.409 kb on + strandat 886.410 kb on - strandat 886.410 kb on - strandat 886.456 kb on + strandat 886.457 kb on - strandat 886.468 kb on + strandat 886.630 kb on + strand, within HMPREF1058_RS15565at 886.759 kb on + strand, within HMPREF1058_RS15565at 886.760 kb on - strand, within HMPREF1058_RS15565at 886.792 kb on + strand, within HMPREF1058_RS15565at 886.952 kb on + strand, within HMPREF1058_RS15565at 886.952 kb on + strand, within HMPREF1058_RS15565at 886.953 kb on - strand, within HMPREF1058_RS15565at 886.953 kb on - strand, within HMPREF1058_RS15565at 886.994 kb on - strand, within HMPREF1058_RS15565at 886.994 kb on - strand, within HMPREF1058_RS15565at 886.994 kb on - strand, within HMPREF1058_RS15565at 887.017 kb on + strand, within HMPREF1058_RS15565at 887.018 kb on - strand, within HMPREF1058_RS15565at 887.030 kb on - strand, within HMPREF1058_RS15565at 887.030 kb on - strand, within HMPREF1058_RS15565at 887.086 kb on - strand, within HMPREF1058_RS15565at 887.096 kb on + strand, within HMPREF1058_RS15565at 887.114 kb on - strand, within HMPREF1058_RS15565at 887.176 kb on + strand, within HMPREF1058_RS15565at 887.255 kb on + strand, within HMPREF1058_RS15565at 887.255 kb on + strand, within HMPREF1058_RS15565at 887.256 kb on - strand, within HMPREF1058_RS15565at 887.256 kb on - strand, within HMPREF1058_RS15565at 887.256 kb on - strand, within HMPREF1058_RS15565at 887.261 kb on - strand, within HMPREF1058_RS15565at 887.351 kb on - strand, within HMPREF1058_RS15565at 887.365 kb on + strand, within HMPREF1058_RS15565at 887.371 kb on + strand, within HMPREF1058_RS15565at 887.371 kb on + strand, within HMPREF1058_RS15565at 887.372 kb on - strand, within HMPREF1058_RS15565at 887.372 kb on - strand, within HMPREF1058_RS15565at 887.386 kb on + strand, within HMPREF1058_RS15565at 887.386 kb on + strand, within HMPREF1058_RS15565at 887.388 kb on + strand, within HMPREF1058_RS15565at 887.389 kb on - strand, within HMPREF1058_RS15565at 887.389 kb on - strand, within HMPREF1058_RS15565at 887.389 kb on - strand, within HMPREF1058_RS15565at 887.389 kb on - strand, within HMPREF1058_RS15565at 887.569 kb on + strand, within HMPREF1058_RS15565at 887.569 kb on + strand, within HMPREF1058_RS15565at 887.569 kb on + strand, within HMPREF1058_RS15565at 887.570 kb on - strand, within HMPREF1058_RS15565at 887.577 kb on - strand, within HMPREF1058_RS15565at 887.577 kb on - strand, within HMPREF1058_RS15565at 887.577 kb on - strand, within HMPREF1058_RS15565at 887.600 kb on + strand, within HMPREF1058_RS15565at 887.601 kb on - strand, within HMPREF1058_RS15565at 887.613 kb on - strand, within HMPREF1058_RS15565at 887.627 kb on - strand, within HMPREF1058_RS15565at 887.675 kb on + strand, within HMPREF1058_RS15565at 887.675 kb on + strand, within HMPREF1058_RS15565at 887.676 kb on - strand, within HMPREF1058_RS15565at 887.841 kb on - strandat 887.850 kb on + strandat 887.851 kb on - strandat 887.854 kb on - strandat 887.854 kb on - strandat 887.873 kb on + strandat 887.883 kb on - strandat 887.899 kb on - strandat 887.957 kb on + strandat 887.957 kb on + strandat 887.958 kb on - strandat 887.976 kb on + strandat 887.982 kb on - strandat 888.051 kb on - strandat 888.090 kb on + strandat 888.095 kb on + strandat 888.110 kb on + strandat 888.110 kb on + strandat 888.111 kb on - strandat 888.112 kb on + strandat 888.143 kb on + strandat 888.151 kb on - strandat 888.280 kb on + strandat 888.559 kb on - strand, within HMPREF1058_RS15560at 888.559 kb on - strand, within HMPREF1058_RS15560at 888.572 kb on + strand, within HMPREF1058_RS15560at 888.573 kb on - strand, within HMPREF1058_RS15560at 888.708 kb on + strand, within HMPREF1058_RS15560at 888.708 kb on + strand, within HMPREF1058_RS15560at 888.728 kb on + strand, within HMPREF1058_RS15560at 888.729 kb on - strand, within HMPREF1058_RS15560at 888.729 kb on - strand, within HMPREF1058_RS15560at 888.855 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
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885,474 + HMPREF1058_RS15570 0.40 -0.5
885,475 - HMPREF1058_RS15570 0.40 -1.5
885,526 + HMPREF1058_RS15570 0.43 -1.7
885,527 - HMPREF1058_RS15570 0.43 -1.7
885,533 + HMPREF1058_RS15570 0.43 -1.2
885,534 - HMPREF1058_RS15570 0.43 -0.1
885,560 - HMPREF1058_RS15570 0.45 -0.5
885,583 - HMPREF1058_RS15570 0.47 -0.9
885,595 + HMPREF1058_RS15570 0.47 -1.5
885,595 + HMPREF1058_RS15570 0.47 +0.3
885,595 + HMPREF1058_RS15570 0.47 -1.6
885,596 - HMPREF1058_RS15570 0.47 -0.7
885,642 + HMPREF1058_RS15570 0.50 -1.2
885,649 + HMPREF1058_RS15570 0.51 -0.8
885,660 + HMPREF1058_RS15570 0.51 -4.0
885,673 - HMPREF1058_RS15570 0.52 +0.7
885,673 - HMPREF1058_RS15570 0.52 -0.7
885,673 - HMPREF1058_RS15570 0.52 -0.4
885,673 - HMPREF1058_RS15570 0.52 -1.2
885,696 + HMPREF1058_RS15570 0.54 -1.3
885,697 - HMPREF1058_RS15570 0.54 -0.3
885,704 - HMPREF1058_RS15570 0.54 +1.3
885,704 - HMPREF1058_RS15570 0.54 -2.3
885,745 + HMPREF1058_RS15570 0.57 -3.6
885,773 - HMPREF1058_RS15570 0.59 +0.4
885,917 + HMPREF1058_RS15570 0.68 -1.8
885,918 - HMPREF1058_RS15570 0.68 -1.5
885,918 - HMPREF1058_RS15570 0.68 -2.1
885,918 - HMPREF1058_RS15570 0.68 -2.4
886,039 + HMPREF1058_RS15570 0.76 -0.5
886,079 - HMPREF1058_RS15570 0.78 -1.0
886,079 - HMPREF1058_RS15570 0.78 -0.8
886,093 + HMPREF1058_RS15570 0.79 -3.8
886,093 + HMPREF1058_RS15570 0.79 -2.9
886,100 - HMPREF1058_RS15570 0.79 -0.4
886,101 - HMPREF1058_RS15570 0.79 -1.9
886,189 + HMPREF1058_RS15570 0.85 -0.7
886,263 - HMPREF1058_RS15570 0.90 -2.3
886,263 - HMPREF1058_RS15570 0.90 -1.1
886,263 - HMPREF1058_RS15570 0.90 -1.8
886,263 - HMPREF1058_RS15570 0.90 -1.8
886,265 - HMPREF1058_RS15570 0.90 -1.3
886,265 - HMPREF1058_RS15570 0.90 +0.5
886,409 + -0.9
886,410 - -1.7
886,410 - -0.2
886,456 + -0.9
886,457 - -0.0
886,468 + -1.3
886,630 + HMPREF1058_RS15565 0.12 +0.3
886,759 + HMPREF1058_RS15565 0.21 -3.9
886,760 - HMPREF1058_RS15565 0.21 -4.6
886,792 + HMPREF1058_RS15565 0.23 -2.6
886,952 + HMPREF1058_RS15565 0.35 -4.4
886,952 + HMPREF1058_RS15565 0.35 -2.1
886,953 - HMPREF1058_RS15565 0.35 -2.1
886,953 - HMPREF1058_RS15565 0.35 -3.2
886,994 - HMPREF1058_RS15565 0.38 -1.9
886,994 - HMPREF1058_RS15565 0.38 -0.7
886,994 - HMPREF1058_RS15565 0.38 -1.2
887,017 + HMPREF1058_RS15565 0.39 -2.1
887,018 - HMPREF1058_RS15565 0.39 -1.9
887,030 - HMPREF1058_RS15565 0.40 -3.5
887,030 - HMPREF1058_RS15565 0.40 -4.0
887,086 - HMPREF1058_RS15565 0.44 -3.6
887,096 + HMPREF1058_RS15565 0.45 -3.9
887,114 - HMPREF1058_RS15565 0.46 -3.7
887,176 + HMPREF1058_RS15565 0.51 -1.5
887,255 + HMPREF1058_RS15565 0.56 -4.3
887,255 + HMPREF1058_RS15565 0.56 -2.2
887,256 - HMPREF1058_RS15565 0.56 -2.6
887,256 - HMPREF1058_RS15565 0.56 -1.3
887,256 - HMPREF1058_RS15565 0.56 -2.3
887,261 - HMPREF1058_RS15565 0.57 -3.0
887,351 - HMPREF1058_RS15565 0.63 -1.1
887,365 + HMPREF1058_RS15565 0.64 -2.6
887,371 + HMPREF1058_RS15565 0.65 -0.1
887,371 + HMPREF1058_RS15565 0.65 -2.6
887,372 - HMPREF1058_RS15565 0.65 -4.4
887,372 - HMPREF1058_RS15565 0.65 -3.0
887,386 + HMPREF1058_RS15565 0.66 -1.7
887,386 + HMPREF1058_RS15565 0.66 -2.5
887,388 + HMPREF1058_RS15565 0.66 -2.5
887,389 - HMPREF1058_RS15565 0.66 -2.7
887,389 - HMPREF1058_RS15565 0.66 -1.1
887,389 - HMPREF1058_RS15565 0.66 -3.5
887,389 - HMPREF1058_RS15565 0.66 -2.0
887,569 + HMPREF1058_RS15565 0.79 -1.3
887,569 + HMPREF1058_RS15565 0.79 -2.6
887,569 + HMPREF1058_RS15565 0.79 -1.1
887,570 - HMPREF1058_RS15565 0.79 -3.9
887,577 - HMPREF1058_RS15565 0.79 -2.5
887,577 - HMPREF1058_RS15565 0.79 -2.6
887,577 - HMPREF1058_RS15565 0.79 -2.6
887,600 + HMPREF1058_RS15565 0.81 -2.7
887,601 - HMPREF1058_RS15565 0.81 -2.8
887,613 - HMPREF1058_RS15565 0.82 -4.0
887,627 - HMPREF1058_RS15565 0.83 -1.1
887,675 + HMPREF1058_RS15565 0.86 -3.5
887,675 + HMPREF1058_RS15565 0.86 -2.5
887,676 - HMPREF1058_RS15565 0.86 -4.5
887,841 - -0.7
887,850 + -2.3
887,851 - -3.0
887,854 - -2.6
887,854 - +0.7
887,873 + -0.3
887,883 - -2.4
887,899 - -2.7
887,957 + -0.1
887,957 + -4.5
887,958 - +1.3
887,976 + -2.3
887,982 - -1.3
888,051 - +0.9
888,090 + -0.8
888,095 + -0.1
888,110 + -0.5
888,110 + -0.3
888,111 - -0.0
888,112 + -3.0
888,143 + +0.2
888,151 - -0.7
888,280 + +0.4
888,559 - HMPREF1058_RS15560 0.51 -0.9
888,559 - HMPREF1058_RS15560 0.51 +0.4
888,572 + HMPREF1058_RS15560 0.53 -0.1
888,573 - HMPREF1058_RS15560 0.53 +0.9
888,708 + HMPREF1058_RS15560 0.75 -0.7
888,708 + HMPREF1058_RS15560 0.75 +0.4
888,728 + HMPREF1058_RS15560 0.78 -0.3
888,729 - HMPREF1058_RS15560 0.78 +0.6
888,729 - HMPREF1058_RS15560 0.78 +0.3
888,855 + -1.2

Or see this region's nucleotide sequence