Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15265

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
961,907	+				+1.3
961,908	-				+0.6
961,992	+				-0.7
961,992	+				-0.7
962,219	+		HMPREF1058_RS15270	0.30	-0.3
962,336	+		HMPREF1058_RS15270	0.47	+0.2
962,411	+		HMPREF1058_RS15270	0.58	-0.3
962,412	-		HMPREF1058_RS15270	0.58	-0.2
962,412	-		HMPREF1058_RS15270	0.58	-0.1
962,415	-		HMPREF1058_RS15270	0.59	-0.8
962,491	-		HMPREF1058_RS15270	0.70	+0.7
962,586	-		HMPREF1058_RS15270	0.84	-0.9
962,599	+		HMPREF1058_RS15270	0.86	-0.5
962,710	+				+0.0
962,714	-				+0.5
962,714	-				-0.2
962,762	-				+0.6
962,763	+				-1.2
962,887	+		HMPREF1058_RS15265	0.11	-1.5
962,887	+		HMPREF1058_RS15265	0.11	-3.3
963,047	+		HMPREF1058_RS15265	0.34	-2.3
963,329	+		HMPREF1058_RS15265	0.75	-0.7
963,346	+		HMPREF1058_RS15265	0.78	+0.3
963,347	-				+1.3
963,438	+				-0.3
963,439	-				-0.1
963,439	-				+0.1
963,477	+				-0.5
963,478	-				+0.3
963,478	-				+0.1
963,478	-				-0.3
963,485	+				-2.4
963,486	-				+0.7
963,524	-				+0.7
963,529	-				-0.7
963,612	+				+0.6
963,835	-				+0.5
963,848	+				+0.8
963,879	-				-0.5
964,069	+		HMPREF1058_RS15260	0.23	-0.5
964,069	+		HMPREF1058_RS15260	0.23	-0.4
964,070	-		HMPREF1058_RS15260	0.23	-0.5
964,101	+		HMPREF1058_RS15260	0.25	-1.3
964,402	+		HMPREF1058_RS15260	0.50	-0.1
964,402	+		HMPREF1058_RS15260	0.50	-0.5
964,403	-		HMPREF1058_RS15260	0.50	+0.4
964,403	-		HMPREF1058_RS15260	0.50	+0.3