Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14930

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
1,067,103	-		HMPREF1058_RS14940	0.87	+0.1
1,067,104	+		HMPREF1058_RS14940	0.87	+1.2
1,067,104	+		HMPREF1058_RS14940	0.87	+0.2
1,067,158	+				+0.2
1,067,228	+				+0.1
1,067,254	+				-0.0
1,067,255	-				-1.5
1,067,256	-				-0.3
1,067,288	+				-0.4
1,067,290	+				+1.1
1,067,297	-				-0.8
1,067,297	-				-0.3
1,067,349	+				+0.1
1,067,349	+				+0.9
1,067,374	+				-1.3
1,067,375	-				+0.4
1,067,375	-				-0.2
1,067,386	-				-0.4
1,067,403	+				+0.0
1,067,530	-				-0.4
1,067,531	+				+0.7
1,067,531	+				+1.7
1,067,531	+				-0.5
1,067,532	-				+1.6
1,067,532	-				-0.8
1,067,537	-				-0.6
1,067,725	-				+0.4
1,067,732	-				-0.8
1,067,736	-				-1.1
1,067,785	-				-0.0
1,068,089	+				-1.0
1,068,142	+				-1.8
1,068,142	+				-2.8
1,068,143	-				-0.8
1,068,241	-				-1.3
1,068,241	-				-3.3
1,068,287	+		HMPREF1058_RS14930	0.11	+1.2
1,068,312	-		HMPREF1058_RS14930	0.13	-1.8
1,068,339	+		HMPREF1058_RS14930	0.14	-2.8
1,068,339	+		HMPREF1058_RS14930	0.14	-2.8
1,068,339	+		HMPREF1058_RS14930	0.14	-4.5
1,068,339	+		HMPREF1058_RS14930	0.14	-3.5
1,068,340	-		HMPREF1058_RS14930	0.14	-4.1
1,068,346	-				-0.8
1,068,478	-		HMPREF1058_RS14930	0.22	-4.7
1,068,604	-		HMPREF1058_RS14930	0.29	-0.8
1,068,669	-		HMPREF1058_RS14930	0.33	-1.6
1,068,669	-		HMPREF1058_RS14930	0.33	-3.6
1,068,714	+		HMPREF1058_RS14930	0.36	-0.3
1,068,716	+		HMPREF1058_RS14930	0.36	-1.5
1,068,716	+		HMPREF1058_RS14930	0.36	-0.9
1,068,716	+		HMPREF1058_RS14930	0.36	-1.3
1,068,756	+		HMPREF1058_RS14930	0.38	-2.7
1,068,756	+		HMPREF1058_RS14930	0.38	-1.6
1,068,761	-		HMPREF1058_RS14930	0.38	-1.6
1,068,761	-		HMPREF1058_RS14930	0.38	-1.1
1,068,816	+		HMPREF1058_RS14930	0.41	-0.3
1,068,817	-		HMPREF1058_RS14930	0.41	-3.1
1,068,836	-		HMPREF1058_RS14930	0.43	-4.4
1,068,836	-		HMPREF1058_RS14930	0.43	-2.4
1,068,836	-		HMPREF1058_RS14930	0.43	-4.0
1,068,845	+		HMPREF1058_RS14930	0.43	-0.3
1,068,921	-		HMPREF1058_RS14930	0.47	-3.1
1,068,950	+		HMPREF1058_RS14930	0.49	-1.5
1,068,950	+		HMPREF1058_RS14930	0.49	-2.6
1,068,950	+		HMPREF1058_RS14930	0.49	+1.2
1,069,006	+		HMPREF1058_RS14930	0.52	-2.3
1,069,006	+		HMPREF1058_RS14930	0.52	-2.8
1,069,007	-		HMPREF1058_RS14930	0.52	-2.1
1,069,010	+		HMPREF1058_RS14930	0.53	-5.1
1,069,018	-		HMPREF1058_RS14930	0.53	-4.0
1,069,051	+		HMPREF1058_RS14930	0.55	-3.5
1,069,115	+				+0.2
1,069,121	-		HMPREF1058_RS14930	0.59	-3.5
1,069,172	-		HMPREF1058_RS14930	0.62	-1.9
1,069,241	-		HMPREF1058_RS14930	0.66	-1.1
1,069,259	+		HMPREF1058_RS14930	0.67	-2.5
1,069,259	+		HMPREF1058_RS14930	0.67	-3.7
1,069,261	+		HMPREF1058_RS14930	0.67	-1.1
1,069,352	+		HMPREF1058_RS14930	0.72	-0.3
1,069,353	-		HMPREF1058_RS14930	0.72	-4.7
1,069,354	+		HMPREF1058_RS14930	0.72	-2.3
1,069,408	+		HMPREF1058_RS14930	0.75	-0.8
1,069,600	-		HMPREF1058_RS14930	0.86	-0.9
1,069,611	-		HMPREF1058_RS14930	0.87	-2.6
1,069,611	-		HMPREF1058_RS14930	0.87	-2.3
1,069,685	-				-3.1
1,069,805	+				+0.2
1,069,840	-				-2.0
1,069,891	+				+0.3
1,069,891	+				+1.2
1,069,892	-				-1.8
1,069,892	-				-3.0
1,069,892	-				-4.5
1,069,894	+				+2.0
1,069,900	+				+0.3
1,069,900	+				+0.6
1,069,903	+				+1.5
1,069,903	-				-2.3
1,069,903	-				-2.7
1,069,903	-				-2.2
1,069,912	+				+1.6
1,069,912	+				+1.6
1,069,912	+				+0.8
1,069,961	+				+1.4
1,069,968	+				-1.9