Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13910

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
1,328,223	-				-0.1
1,328,223	-				-0.5
1,328,242	+				-0.5
1,328,242	+				+0.3
1,328,243	-				+0.8
1,328,265	+				+0.1
1,328,307	+		HMPREF1058_RS13915	0.21	+1.3
1,328,307	+		HMPREF1058_RS13915	0.21	-0.2
1,328,328	+		HMPREF1058_RS13915	0.28	-0.0
1,328,374	+		HMPREF1058_RS13915	0.43	+0.6
1,328,374	+		HMPREF1058_RS13915	0.43	-0.4
1,328,392	+		HMPREF1058_RS13915	0.49	+0.6
1,328,396	+		HMPREF1058_RS13915	0.50	-0.6
1,328,396	+		HMPREF1058_RS13915	0.50	+0.4
1,328,397	-		HMPREF1058_RS13915	0.51	-3.1
1,328,397	-		HMPREF1058_RS13915	0.51	+0.1
1,328,397	-		HMPREF1058_RS13915	0.51	+0.0
1,328,461	+		HMPREF1058_RS13915	0.72	-0.7
1,328,461	+		HMPREF1058_RS13915	0.72	+0.4
1,328,520	-				+1.1
1,328,523	+				-0.1
1,328,523	+				+0.3
1,328,524	-				-0.2
1,328,528	+				+0.3
1,328,603	+		HMPREF1058_RS13910	0.12	-5.2
1,328,650	-		HMPREF1058_RS13910	0.23	-1.7
1,328,755	-		HMPREF1058_RS13910	0.47	+0.7
1,328,755	-		HMPREF1058_RS13910	0.47	-3.0
1,328,791	+		HMPREF1058_RS13910	0.56	-4.0
1,328,833	+		HMPREF1058_RS13910	0.65	-1.5
1,328,834	-		HMPREF1058_RS13910	0.66	-1.9
1,328,962	+				-2.6
1,328,964	+				-0.5
1,328,964	+				-1.9
1,328,965	-				-1.2
1,328,967	+				-1.9
1,328,968	-				-2.4
1,328,968	-				-4.0
1,329,017	+		HMPREF1058_RS13905	0.14	-0.5
1,329,017	+		HMPREF1058_RS13905	0.14	-3.5
1,329,023	-		HMPREF1058_RS13905	0.16	+0.1
1,329,048	-		HMPREF1058_RS13905	0.27	+0.8
1,329,057	+		HMPREF1058_RS13905	0.31	-3.5
1,329,126	+		HMPREF1058_RS13905	0.60	-2.5
1,329,155	+		HMPREF1058_RS13905	0.73	+0.1
1,329,156	-		HMPREF1058_RS13905	0.73	-2.6
1,329,352	+		HMPREF1058_RS13900	0.16	+0.2
1,329,352	+		HMPREF1058_RS13900	0.16	-0.3
1,329,496	+		HMPREF1058_RS13900	0.55	-0.6
1,329,619	+		HMPREF1058_RS13900	0.89	-1.5
1,329,619	+		HMPREF1058_RS13900	0.89	-1.2
1,329,667	+				-0.5
1,329,669	+				-0.3
1,329,669	+				-0.1
1,329,672	+				-1.2
1,329,676	+				-1.6
1,329,756	+		HMPREF1058_RS13895	0.22	-0.1
1,329,756	+		HMPREF1058_RS13895	0.22	-0.3
1,329,782	+		HMPREF1058_RS13895	0.29	-2.6
1,329,921	+		HMPREF1058_RS13895	0.68	-0.0