Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13655

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
1,407,899	-				+0.6
1,407,933	+				-1.5
1,408,029	+				+0.2
1,408,046	-				-0.1
1,408,155	+				+0.3
1,408,230	+				-0.8
1,408,230	+				+0.4
1,408,230	+				-1.0
1,408,230	+				-0.5
1,408,231	-				-0.7
1,408,231	-				+1.0
1,408,234	+				-0.3
1,408,234	+				-0.7
1,408,234	+				+1.2
1,408,234	+				+2.0
1,408,234	+				+1.0
1,408,234	+				-0.5
1,408,234	+				-1.1
1,408,234	+				-1.0
1,408,234	+				+0.2
1,408,235	-				+1.2
1,408,235	-				-1.3
1,408,235	-				+0.5
1,408,238	+				-0.7
1,408,238	+				-0.3
1,408,239	-				+0.5
1,408,239	-				-0.5
1,408,240	+				-0.5
1,408,240	+				-0.2
1,408,241	-				-0.8
1,408,250	+				-0.2
1,408,252	+				-0.2
1,408,252	+				+0.0
1,408,253	-				+0.3
1,408,255	+				-0.6
1,408,255	+				+0.2
1,408,261	+				+1.4
1,408,261	+				+1.3
1,408,271	-				-0.3
1,408,275	+				-0.1
1,408,276	-				+0.4
1,408,302	+				-1.5
1,408,337	-				-2.1
1,408,376	-		HMPREF1058_RS20555	0.17	-0.2
1,408,450	+				-0.1
1,408,759	+				-2.8
1,408,760	-				+1.0
1,408,791	+				-1.0
1,408,791	+				-0.3
1,408,791	+				-2.3
1,408,792	-				-1.9
1,408,850	+				-0.8
1,408,851	-				-0.6
1,408,863	+				-3.1
1,408,921	+				-2.4
1,408,923	+				-3.5
1,408,923	+				-2.7
1,408,924	-				-2.1
1,409,103	-		HMPREF1058_RS13655	0.22	-1.2
1,409,244	+		HMPREF1058_RS13655	0.32	-3.3
1,409,303	+		HMPREF1058_RS13655	0.37	-2.4
1,409,303	+		HMPREF1058_RS13655	0.37	-3.2
1,409,344	-		HMPREF1058_RS13655	0.40	-4.2
1,409,350	-		HMPREF1058_RS13655	0.41	-3.4
1,409,367	-		HMPREF1058_RS13655	0.42	-4.4
1,409,393	+		HMPREF1058_RS13655	0.44	-3.9
1,409,393	+		HMPREF1058_RS13655	0.44	-3.5
1,409,394	-		HMPREF1058_RS13655	0.44	-3.4
1,409,396	+		HMPREF1058_RS13655	0.44	-2.6
1,409,397	-		HMPREF1058_RS13655	0.44	-1.9
1,409,397	-		HMPREF1058_RS13655	0.44	-3.5
1,409,399	-		HMPREF1058_RS13655	0.44	-3.4
1,409,401	-		HMPREF1058_RS13655	0.45	-4.5
1,409,401	-		HMPREF1058_RS13655	0.45	-5.6
1,409,401	-		HMPREF1058_RS13655	0.45	-1.7
1,409,520	+		HMPREF1058_RS13655	0.54	-3.6
1,409,521	-		HMPREF1058_RS13655	0.54	-4.2
1,409,534	+		HMPREF1058_RS13655	0.55	-3.4
1,409,572	+		HMPREF1058_RS13655	0.58	-3.1
1,409,580	+		HMPREF1058_RS13655	0.58	-0.3
1,409,581	-		HMPREF1058_RS13655	0.58	-2.1
1,409,633	+		HMPREF1058_RS13655	0.62	-3.0
1,409,633	+		HMPREF1058_RS13655	0.62	-2.1
1,409,634	-		HMPREF1058_RS13655	0.63	-1.4
1,409,662	+		HMPREF1058_RS13655	0.65	-1.5
1,409,668	-		HMPREF1058_RS13655	0.65	-3.4
1,409,718	+		HMPREF1058_RS13655	0.69	-4.9
1,409,806	+		HMPREF1058_RS13655	0.76	-2.4
1,409,806	+		HMPREF1058_RS13655	0.76	-3.1
1,409,807	-		HMPREF1058_RS13655	0.76	-3.4
1,409,844	-		HMPREF1058_RS13655	0.79	-2.3
1,409,850	-		HMPREF1058_RS13655	0.79	-1.3
1,409,949	-		HMPREF1058_RS13655	0.87	-2.3
1,410,053	-				-3.2
1,410,114	+				-1.4
1,410,114	+				-1.3
1,410,116	+				-1.6
1,410,197	-				-0.4
1,410,210	+				-0.7
1,410,250	-				-0.2
1,410,315	+				+0.2
1,410,315	+				-0.6
1,410,343	+				+0.0
1,410,360	+				+0.1
1,410,481	+				+2.2
1,410,581	+		HMPREF1058_RS13650	0.11	+1.8
1,410,737	+		HMPREF1058_RS13650	0.28	+0.6
1,410,739	+		HMPREF1058_RS13650	0.28	+0.0
1,410,755	+		HMPREF1058_RS13650	0.29	+0.2
1,410,792	+		HMPREF1058_RS13650	0.33	-0.3
1,410,792	+		HMPREF1058_RS13650	0.33	+0.6
1,410,802	+		HMPREF1058_RS13650	0.34	+1.0
1,410,838	+		HMPREF1058_RS13650	0.38	+0.0
1,410,894	+		HMPREF1058_RS13650	0.44	-0.3
1,410,907	+		HMPREF1058_RS13650	0.45	+0.2
1,410,973	+		HMPREF1058_RS13650	0.52	+0.3
1,411,053	+		HMPREF1058_RS13650	0.61	-0.2
1,411,089	+		HMPREF1058_RS13650	0.64	+0.5