Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11925 and HMPREF1058_RS11920 are separated by 16 nucleotides HMPREF1058_RS11920 and HMPREF1058_RS11915 are separated by 271 nucleotides HMPREF1058_RS11915 and HMPREF1058_RS11910 are separated by 261 nucleotides
HMPREF1058_RS11925: HMPREF1058_RS11925 - DUF2975 domain-containing protein, at 243,172 to 243,801
_RS11925
HMPREF1058_RS11920: HMPREF1058_RS11920 - DUF2975 domain-containing protein, at 243,818 to 244,465
_RS11920
HMPREF1058_RS11915: HMPREF1058_RS11915 - helix-turn-helix transcriptional regulator, at 244,737 to 244,949
_RS11915
HMPREF1058_RS11910: HMPREF1058_RS11910 - DEAD/DEAH box helicase, at 245,211 to 247,085
_RS11910
Position (kb) 244
245 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 243.853 kb on + strand at 243.856 kb on - strand at 243.931 kb on + strand, within HMPREF1058_RS11920 at 243.932 kb on - strand, within HMPREF1058_RS11920 at 243.932 kb on - strand, within HMPREF1058_RS11920 at 243.948 kb on + strand, within HMPREF1058_RS11920 at 243.949 kb on - strand, within HMPREF1058_RS11920 at 243.949 kb on - strand, within HMPREF1058_RS11920 at 243.950 kb on + strand, within HMPREF1058_RS11920 at 243.970 kb on + strand, within HMPREF1058_RS11920 at 243.970 kb on + strand, within HMPREF1058_RS11920 at 244.025 kb on - strand, within HMPREF1058_RS11920 at 244.071 kb on - strand, within HMPREF1058_RS11920 at 244.087 kb on - strand, within HMPREF1058_RS11920 at 244.215 kb on + strand, within HMPREF1058_RS11920 at 244.220 kb on - strand, within HMPREF1058_RS11920 at 244.220 kb on - strand, within HMPREF1058_RS11920 at 244.257 kb on - strand, within HMPREF1058_RS11920 at 244.257 kb on - strand, within HMPREF1058_RS11920 at 244.257 kb on - strand, within HMPREF1058_RS11920 at 244.285 kb on - strand at 244.358 kb on + strand, within HMPREF1058_RS11920 at 244.359 kb on - strand, within HMPREF1058_RS11920 at 244.544 kb on + strand at 244.556 kb on - strand at 244.569 kb on + strand at 244.607 kb on - strand at 244.651 kb on - strand at 244.661 kb on + strand at 244.661 kb on + strand at 244.746 kb on - strand at 244.762 kb on + strand, within HMPREF1058_RS11915 at 244.901 kb on - strand, within HMPREF1058_RS11915 at 244.950 kb on + strand at 244.950 kb on + strand at 244.966 kb on + strand at 244.966 kb on + strand at 244.966 kb on + strand at 244.966 kb on + strand at 244.967 kb on - strand at 244.967 kb on - strand at 244.967 kb on - strand at 244.996 kb on + strand at 245.042 kb on + strand at 245.064 kb on + strand at 245.067 kb on - strand at 245.121 kb on + strand at 245.159 kb on - strand at 245.159 kb on - strand at 245.161 kb on - strand at 245.252 kb on - strand at 245.275 kb on - strand at 245.305 kb on + strand at 245.314 kb on - strand at 245.338 kb on + strand at 245.500 kb on - strand, within HMPREF1058_RS11910 at 245.528 kb on - strand, within HMPREF1058_RS11910 at 245.557 kb on + strand, within HMPREF1058_RS11910 at 245.579 kb on - strand, within HMPREF1058_RS11910 at 245.579 kb on - strand, within HMPREF1058_RS11910 at 245.583 kb on - strand, within HMPREF1058_RS11910 at 245.620 kb on + strand, within HMPREF1058_RS11910 at 245.621 kb on - strand at 245.651 kb on + strand, within HMPREF1058_RS11910 at 245.663 kb on - strand, within HMPREF1058_RS11910 at 245.710 kb on + strand, within HMPREF1058_RS11910 at 245.875 kb on - strand, within HMPREF1058_RS11910 at 245.898 kb on + strand, within HMPREF1058_RS11910
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 243,853 + -0.1 243,856 - -1.7 243,931 + HMPREF1058_RS11920 0.17 -2.3 243,932 - HMPREF1058_RS11920 0.18 -1.8 243,932 - HMPREF1058_RS11920 0.18 -2.1 243,948 + HMPREF1058_RS11920 0.20 -0.5 243,949 - HMPREF1058_RS11920 0.20 -2.4 243,949 - HMPREF1058_RS11920 0.20 +0.9 243,950 + HMPREF1058_RS11920 0.20 -1.1 243,970 + HMPREF1058_RS11920 0.23 -0.1 243,970 + HMPREF1058_RS11920 0.23 -2.2 244,025 - HMPREF1058_RS11920 0.32 -1.7 244,071 - HMPREF1058_RS11920 0.39 +0.1 244,087 - HMPREF1058_RS11920 0.42 -1.1 244,215 + HMPREF1058_RS11920 0.61 -2.4 244,220 - HMPREF1058_RS11920 0.62 -1.4 244,220 - HMPREF1058_RS11920 0.62 +0.9 244,257 - HMPREF1058_RS11920 0.68 -1.4 244,257 - HMPREF1058_RS11920 0.68 -0.6 244,257 - HMPREF1058_RS11920 0.68 -2.5 244,285 - -1.1 244,358 + HMPREF1058_RS11920 0.83 -0.6 244,359 - HMPREF1058_RS11920 0.83 -1.5 244,544 + -3.2 244,556 - -2.6 244,569 + -2.6 244,607 - -2.8 244,651 - -2.1 244,661 + -1.7 244,661 + -2.9 244,746 - -2.7 244,762 + HMPREF1058_RS11915 0.12 -1.1 244,901 - HMPREF1058_RS11915 0.77 -2.7 244,950 + +0.5 244,950 + +0.3 244,966 + -0.7 244,966 + +0.5 244,966 + -0.7 244,966 + -0.6 244,967 - -0.6 244,967 - +0.6 244,967 - +0.2 244,996 + +1.8 245,042 + -0.6 245,064 + -0.6 245,067 - +0.3 245,121 + +0.1 245,159 - +0.9 245,159 - +0.9 245,161 - -2.4 245,252 - -1.9 245,275 - -1.6 245,305 + -0.7 245,314 - -1.1 245,338 + -1.4 245,500 - HMPREF1058_RS11910 0.15 -0.1 245,528 - HMPREF1058_RS11910 0.17 -1.0 245,557 + HMPREF1058_RS11910 0.18 -1.3 245,579 - HMPREF1058_RS11910 0.20 -1.9 245,579 - HMPREF1058_RS11910 0.20 -0.7 245,583 - HMPREF1058_RS11910 0.20 -0.7 245,620 + HMPREF1058_RS11910 0.22 -3.3 245,621 - +0.9 245,651 + HMPREF1058_RS11910 0.23 -2.1 245,663 - HMPREF1058_RS11910 0.24 -4.2 245,710 + HMPREF1058_RS11910 0.27 +0.9 245,875 - HMPREF1058_RS11910 0.35 -0.9 245,898 + HMPREF1058_RS11910 0.37 +0.9
Or see this region's nucleotide sequence