Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11820 and HMPREF1058_RS11815 overlap by 1 nucleotides HMPREF1058_RS11815 and HMPREF1058_RS11810 are separated by 3 nucleotides
HMPREF1058_RS11820: HMPREF1058_RS11820 - 4Fe-4S binding protein, at 276,402 to 277,181
_RS11820
HMPREF1058_RS11815: HMPREF1058_RS11815 - tRNA 2-thiouridine(34) synthase MnmA, at 277,181 to 278,308
_RS11815
HMPREF1058_RS11810: HMPREF1058_RS11810 - aminopeptidase N, at 278,312 to 280,834
_RS11810
Position (kb) 277
278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 276.354 kb on - strand at 276.354 kb on - strand at 276.357 kb on + strand at 276.361 kb on + strand at 276.362 kb on - strand at 276.362 kb on - strand at 276.390 kb on - strand at 276.411 kb on + strand at 276.414 kb on - strand at 276.449 kb on + strand at 276.449 kb on + strand at 276.449 kb on + strand at 276.449 kb on + strand at 276.450 kb on - strand at 276.450 kb on - strand at 276.491 kb on + strand, within HMPREF1058_RS11820 at 276.511 kb on + strand, within HMPREF1058_RS11820 at 276.511 kb on + strand, within HMPREF1058_RS11820 at 276.512 kb on - strand, within HMPREF1058_RS11820 at 276.512 kb on - strand, within HMPREF1058_RS11820 at 276.537 kb on - strand, within HMPREF1058_RS11820 at 276.561 kb on - strand, within HMPREF1058_RS11820 at 276.585 kb on + strand, within HMPREF1058_RS11820 at 276.667 kb on + strand, within HMPREF1058_RS11820 at 276.667 kb on + strand, within HMPREF1058_RS11820 at 276.668 kb on - strand, within HMPREF1058_RS11820 at 276.720 kb on - strand, within HMPREF1058_RS11820 at 276.774 kb on + strand, within HMPREF1058_RS11820 at 276.788 kb on + strand, within HMPREF1058_RS11820 at 276.913 kb on + strand, within HMPREF1058_RS11820 at 276.913 kb on + strand, within HMPREF1058_RS11820 at 276.913 kb on + strand, within HMPREF1058_RS11820 at 276.914 kb on - strand, within HMPREF1058_RS11820 at 276.914 kb on - strand, within HMPREF1058_RS11820 at 276.997 kb on + strand, within HMPREF1058_RS11820 at 277.039 kb on + strand, within HMPREF1058_RS11820 at 277.081 kb on + strand, within HMPREF1058_RS11820 at 277.135 kb on + strand at 277.177 kb on + strand at 277.178 kb on - strand at 277.178 kb on - strand at 277.209 kb on + strand at 277.268 kb on + strand at 277.350 kb on + strand, within HMPREF1058_RS11815 at 277.387 kb on - strand, within HMPREF1058_RS11815 at 277.387 kb on - strand, within HMPREF1058_RS11815 at 277.398 kb on + strand, within HMPREF1058_RS11815 at 277.430 kb on - strand, within HMPREF1058_RS11815 at 277.446 kb on + strand, within HMPREF1058_RS11815 at 277.455 kb on - strand, within HMPREF1058_RS11815 at 277.553 kb on - strand, within HMPREF1058_RS11815 at 277.603 kb on + strand, within HMPREF1058_RS11815 at 277.606 kb on - strand, within HMPREF1058_RS11815 at 277.606 kb on - strand, within HMPREF1058_RS11815 at 277.606 kb on - strand, within HMPREF1058_RS11815 at 277.606 kb on - strand, within HMPREF1058_RS11815 at 277.648 kb on - strand, within HMPREF1058_RS11815 at 277.725 kb on - strand, within HMPREF1058_RS11815 at 277.788 kb on + strand, within HMPREF1058_RS11815 at 277.788 kb on + strand, within HMPREF1058_RS11815 at 277.789 kb on - strand, within HMPREF1058_RS11815 at 277.867 kb on + strand, within HMPREF1058_RS11815 at 277.911 kb on - strand, within HMPREF1058_RS11815 at 277.912 kb on + strand, within HMPREF1058_RS11815 at 277.913 kb on - strand, within HMPREF1058_RS11815 at 277.913 kb on - strand, within HMPREF1058_RS11815 at 277.913 kb on - strand, within HMPREF1058_RS11815 at 277.917 kb on + strand, within HMPREF1058_RS11815 at 277.917 kb on + strand, within HMPREF1058_RS11815 at 277.961 kb on + strand, within HMPREF1058_RS11815 at 277.961 kb on + strand, within HMPREF1058_RS11815 at 277.961 kb on + strand, within HMPREF1058_RS11815 at 277.962 kb on - strand, within HMPREF1058_RS11815 at 277.966 kb on - strand, within HMPREF1058_RS11815 at 277.966 kb on - strand, within HMPREF1058_RS11815 at 278.030 kb on + strand, within HMPREF1058_RS11815 at 278.030 kb on + strand, within HMPREF1058_RS11815 at 278.032 kb on + strand, within HMPREF1058_RS11815 at 278.033 kb on - strand, within HMPREF1058_RS11815 at 278.033 kb on - strand, within HMPREF1058_RS11815 at 278.040 kb on + strand, within HMPREF1058_RS11815 at 278.040 kb on + strand, within HMPREF1058_RS11815 at 278.048 kb on + strand, within HMPREF1058_RS11815 at 278.049 kb on - strand, within HMPREF1058_RS11815 at 278.073 kb on + strand, within HMPREF1058_RS11815 at 278.160 kb on + strand, within HMPREF1058_RS11815 at 278.300 kb on - strand at 278.321 kb on + strand at 278.321 kb on + strand at 278.324 kb on - strand at 278.353 kb on - strand at 278.356 kb on - strand at 278.356 kb on - strand at 278.356 kb on - strand at 278.358 kb on + strand at 278.358 kb on + strand at 278.359 kb on - strand at 278.460 kb on - strand at 278.467 kb on - strand at 278.467 kb on - strand at 278.469 kb on - strand at 278.552 kb on - strand at 278.661 kb on + strand, within HMPREF1058_RS11810 at 278.664 kb on + strand, within HMPREF1058_RS11810 at 278.681 kb on - strand, within HMPREF1058_RS11810 at 278.748 kb on + strand, within HMPREF1058_RS11810 at 278.830 kb on - strand, within HMPREF1058_RS11810 at 278.830 kb on - strand, within HMPREF1058_RS11810 at 278.830 kb on - strand, within HMPREF1058_RS11810 at 278.830 kb on - strand, within HMPREF1058_RS11810 at 278.861 kb on + strand, within HMPREF1058_RS11810 at 278.861 kb on + strand, within HMPREF1058_RS11810 at 278.861 kb on + strand, within HMPREF1058_RS11810 at 278.861 kb on + strand, within HMPREF1058_RS11810 at 278.862 kb on - strand, within HMPREF1058_RS11810 at 278.862 kb on - strand, within HMPREF1058_RS11810 at 278.863 kb on + strand, within HMPREF1058_RS11810 at 278.864 kb on - strand, within HMPREF1058_RS11810 at 278.867 kb on - strand, within HMPREF1058_RS11810 at 278.961 kb on + strand, within HMPREF1058_RS11810 at 278.961 kb on + strand, within HMPREF1058_RS11810 at 278.976 kb on - strand, within HMPREF1058_RS11810 at 278.978 kb on - strand, within HMPREF1058_RS11810 at 278.979 kb on + strand, within HMPREF1058_RS11810 at 278.980 kb on - strand, within HMPREF1058_RS11810 at 279.043 kb on - strand, within HMPREF1058_RS11810 at 279.043 kb on - strand, within HMPREF1058_RS11810 at 279.046 kb on + strand, within HMPREF1058_RS11810 at 279.094 kb on + strand, within HMPREF1058_RS11810 at 279.094 kb on + strand, within HMPREF1058_RS11810 at 279.094 kb on + strand, within HMPREF1058_RS11810 at 279.130 kb on + strand, within HMPREF1058_RS11810 at 279.134 kb on - strand, within HMPREF1058_RS11810 at 279.161 kb on - strand, within HMPREF1058_RS11810 at 279.184 kb on - strand, within HMPREF1058_RS11810 at 279.185 kb on + strand, within HMPREF1058_RS11810 at 279.185 kb on + strand, within HMPREF1058_RS11810 at 279.186 kb on - strand, within HMPREF1058_RS11810 at 279.188 kb on - strand, within HMPREF1058_RS11810 at 279.291 kb on + strand, within HMPREF1058_RS11810
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 276,354 - -2.3 276,354 - -1.1 276,357 + +0.6 276,361 + +0.6 276,362 - -0.7 276,362 - -0.9 276,390 - -1.7 276,411 + -1.2 276,414 - -0.7 276,449 + -0.3 276,449 + -0.6 276,449 + -0.3 276,449 + +0.0 276,450 - -0.7 276,450 - +0.9 276,491 + HMPREF1058_RS11820 0.11 +0.3 276,511 + HMPREF1058_RS11820 0.14 +0.1 276,511 + HMPREF1058_RS11820 0.14 +0.4 276,512 - HMPREF1058_RS11820 0.14 -0.1 276,512 - HMPREF1058_RS11820 0.14 -1.7 276,537 - HMPREF1058_RS11820 0.17 -0.7 276,561 - HMPREF1058_RS11820 0.20 -1.4 276,585 + HMPREF1058_RS11820 0.23 +0.1 276,667 + HMPREF1058_RS11820 0.34 -0.0 276,667 + HMPREF1058_RS11820 0.34 +0.1 276,668 - HMPREF1058_RS11820 0.34 -0.7 276,720 - HMPREF1058_RS11820 0.41 -1.1 276,774 + HMPREF1058_RS11820 0.48 +0.4 276,788 + HMPREF1058_RS11820 0.49 +0.1 276,913 + HMPREF1058_RS11820 0.66 -0.4 276,913 + HMPREF1058_RS11820 0.66 -0.6 276,913 + HMPREF1058_RS11820 0.66 -0.2 276,914 - HMPREF1058_RS11820 0.66 -1.4 276,914 - HMPREF1058_RS11820 0.66 -0.7 276,997 + HMPREF1058_RS11820 0.76 -0.2 277,039 + HMPREF1058_RS11820 0.82 +0.3 277,081 + HMPREF1058_RS11820 0.87 +0.1 277,135 + -0.2 277,177 + -2.1 277,178 - -0.7 277,178 - -3.7 277,209 + -2.9 277,268 + -0.1 277,350 + HMPREF1058_RS11815 0.15 -1.0 277,387 - HMPREF1058_RS11815 0.18 -0.1 277,387 - HMPREF1058_RS11815 0.18 -1.1 277,398 + HMPREF1058_RS11815 0.19 -1.9 277,430 - HMPREF1058_RS11815 0.22 -0.7 277,446 + HMPREF1058_RS11815 0.23 -1.9 277,455 - HMPREF1058_RS11815 0.24 +0.9 277,553 - HMPREF1058_RS11815 0.33 -3.7 277,603 + HMPREF1058_RS11815 0.37 -1.7 277,606 - HMPREF1058_RS11815 0.38 -1.9 277,606 - HMPREF1058_RS11815 0.38 -1.3 277,606 - HMPREF1058_RS11815 0.38 -0.1 277,606 - HMPREF1058_RS11815 0.38 -1.9 277,648 - HMPREF1058_RS11815 0.41 +0.9 277,725 - HMPREF1058_RS11815 0.48 +0.9 277,788 + HMPREF1058_RS11815 0.54 -1.1 277,788 + HMPREF1058_RS11815 0.54 -1.1 277,789 - HMPREF1058_RS11815 0.54 -1.4 277,867 + HMPREF1058_RS11815 0.61 +1.9 277,911 - HMPREF1058_RS11815 0.65 -0.7 277,912 + HMPREF1058_RS11815 0.65 -0.7 277,913 - HMPREF1058_RS11815 0.65 -2.9 277,913 - HMPREF1058_RS11815 0.65 +0.9 277,913 - HMPREF1058_RS11815 0.65 -1.1 277,917 + HMPREF1058_RS11815 0.65 -0.7 277,917 + HMPREF1058_RS11815 0.65 -0.1 277,961 + HMPREF1058_RS11815 0.69 -2.6 277,961 + HMPREF1058_RS11815 0.69 -2.3 277,961 + HMPREF1058_RS11815 0.69 -1.5 277,962 - HMPREF1058_RS11815 0.69 -1.9 277,966 - HMPREF1058_RS11815 0.70 -2.1 277,966 - HMPREF1058_RS11815 0.70 -2.1 278,030 + HMPREF1058_RS11815 0.75 -1.3 278,030 + HMPREF1058_RS11815 0.75 -2.3 278,032 + HMPREF1058_RS11815 0.75 -1.1 278,033 - HMPREF1058_RS11815 0.76 -0.7 278,033 - HMPREF1058_RS11815 0.76 -1.7 278,040 + HMPREF1058_RS11815 0.76 +1.5 278,040 + HMPREF1058_RS11815 0.76 +0.1 278,048 + HMPREF1058_RS11815 0.77 -1.8 278,049 - HMPREF1058_RS11815 0.77 -2.8 278,073 + HMPREF1058_RS11815 0.79 -1.3 278,160 + HMPREF1058_RS11815 0.87 -1.9 278,300 - -1.3 278,321 + +0.2 278,321 + +1.2 278,324 - +2.5 278,353 - -0.1 278,356 - -0.2 278,356 - -0.5 278,356 - -1.1 278,358 + +0.3 278,358 + +0.2 278,359 - +0.3 278,460 - +0.1 278,467 - +0.5 278,467 - +0.2 278,469 - -0.2 278,552 - -0.5 278,661 + HMPREF1058_RS11810 0.14 -0.7 278,664 + HMPREF1058_RS11810 0.14 -0.2 278,681 - HMPREF1058_RS11810 0.15 -0.4 278,748 + HMPREF1058_RS11810 0.17 +0.3 278,830 - HMPREF1058_RS11810 0.21 +0.6 278,830 - HMPREF1058_RS11810 0.21 -0.4 278,830 - HMPREF1058_RS11810 0.21 -0.8 278,830 - HMPREF1058_RS11810 0.21 +0.5 278,861 + HMPREF1058_RS11810 0.22 +0.3 278,861 + HMPREF1058_RS11810 0.22 +0.9 278,861 + HMPREF1058_RS11810 0.22 -0.4 278,861 + HMPREF1058_RS11810 0.22 -0.3 278,862 - HMPREF1058_RS11810 0.22 -1.1 278,862 - HMPREF1058_RS11810 0.22 -0.5 278,863 + HMPREF1058_RS11810 0.22 -0.4 278,864 - HMPREF1058_RS11810 0.22 -0.8 278,867 - HMPREF1058_RS11810 0.22 +0.3 278,961 + HMPREF1058_RS11810 0.26 -0.3 278,961 + HMPREF1058_RS11810 0.26 +0.9 278,976 - HMPREF1058_RS11810 0.26 -0.3 278,978 - HMPREF1058_RS11810 0.26 -0.2 278,979 + HMPREF1058_RS11810 0.26 -0.1 278,980 - HMPREF1058_RS11810 0.26 +0.0 279,043 - HMPREF1058_RS11810 0.29 -0.6 279,043 - HMPREF1058_RS11810 0.29 -0.6 279,046 + HMPREF1058_RS11810 0.29 -1.2 279,094 + HMPREF1058_RS11810 0.31 +0.1 279,094 + HMPREF1058_RS11810 0.31 +0.0 279,094 + HMPREF1058_RS11810 0.31 +0.5 279,130 + HMPREF1058_RS11810 0.32 +1.0 279,134 - HMPREF1058_RS11810 0.33 -0.6 279,161 - HMPREF1058_RS11810 0.34 -0.7 279,184 - HMPREF1058_RS11810 0.35 -0.4 279,185 + HMPREF1058_RS11810 0.35 -1.2 279,185 + HMPREF1058_RS11810 0.35 +0.2 279,186 - HMPREF1058_RS11810 0.35 -2.1 279,188 - HMPREF1058_RS11810 0.35 +0.4 279,291 + HMPREF1058_RS11810 0.39 -0.4
Or see this region's nucleotide sequence