Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11320 and HMPREF1058_RS11315 are separated by 11 nucleotides HMPREF1058_RS11315 and HMPREF1058_RS11310 are separated by 4 nucleotides HMPREF1058_RS11310 and HMPREF1058_RS11305 are separated by 37 nucleotides HMPREF1058_RS11305 and HMPREF1058_RS11300 are separated by 12 nucleotides
HMPREF1058_RS11320: HMPREF1058_RS11320 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 403,615 to 404,670
_RS11320
HMPREF1058_RS11315: HMPREF1058_RS11315 - tRNA pseudouridine(55) synthase TruB, at 404,682 to 405,389
_RS11315
HMPREF1058_RS11310: HMPREF1058_RS11310 - undecaprenyl-diphosphate phosphatase, at 405,394 to 406,194
_RS11310
HMPREF1058_RS11305: HMPREF1058_RS11305 - DUF3098 domain-containing protein, at 406,232 to 406,477
_RS11305
HMPREF1058_RS11300: HMPREF1058_RS11300 - ABC transporter permease, at 406,490 to 407,359
_RS11300
Position (kb) 405
406
407 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 404.781 kb on - strand, within HMPREF1058_RS11315 at 404.995 kb on - strand, within HMPREF1058_RS11315 at 404.995 kb on - strand, within HMPREF1058_RS11315 at 405.000 kb on - strand, within HMPREF1058_RS11315 at 405.000 kb on - strand, within HMPREF1058_RS11315 at 405.081 kb on - strand, within HMPREF1058_RS11315 at 405.099 kb on - strand, within HMPREF1058_RS11315 at 405.099 kb on - strand, within HMPREF1058_RS11315 at 405.099 kb on - strand, within HMPREF1058_RS11315 at 405.106 kb on - strand, within HMPREF1058_RS11315 at 405.106 kb on - strand, within HMPREF1058_RS11315 at 405.164 kb on - strand, within HMPREF1058_RS11315 at 405.179 kb on - strand, within HMPREF1058_RS11315 at 405.222 kb on - strand, within HMPREF1058_RS11315 at 405.250 kb on - strand at 405.303 kb on - strand, within HMPREF1058_RS11315 at 405.308 kb on - strand, within HMPREF1058_RS11315 at 405.308 kb on - strand, within HMPREF1058_RS11315 at 405.313 kb on - strand, within HMPREF1058_RS11315 at 405.313 kb on - strand, within HMPREF1058_RS11315 at 405.364 kb on - strand at 405.441 kb on - strand at 405.453 kb on - strand at 405.463 kb on - strand at 405.481 kb on - strand, within HMPREF1058_RS11310 at 405.493 kb on - strand, within HMPREF1058_RS11310 at 405.500 kb on - strand, within HMPREF1058_RS11310 at 405.548 kb on - strand, within HMPREF1058_RS11310 at 405.548 kb on - strand, within HMPREF1058_RS11310 at 405.554 kb on - strand, within HMPREF1058_RS11310 at 405.556 kb on - strand, within HMPREF1058_RS11310 at 405.622 kb on - strand, within HMPREF1058_RS11310 at 405.844 kb on - strand, within HMPREF1058_RS11310 at 405.844 kb on - strand, within HMPREF1058_RS11310 at 405.844 kb on - strand, within HMPREF1058_RS11310 at 405.844 kb on - strand, within HMPREF1058_RS11310 at 406.016 kb on - strand, within HMPREF1058_RS11310 at 406.019 kb on - strand, within HMPREF1058_RS11310 at 406.030 kb on - strand, within HMPREF1058_RS11310 at 406.088 kb on - strand, within HMPREF1058_RS11310 at 406.200 kb on - strand at 406.478 kb on - strand at 406.486 kb on - strand at 406.486 kb on - strand at 406.501 kb on - strand at 406.501 kb on - strand at 406.501 kb on - strand at 406.528 kb on - strand at 406.544 kb on - strand at 406.544 kb on - strand at 406.546 kb on - strand at 406.546 kb on - strand at 406.546 kb on - strand at 406.546 kb on - strand at 406.546 kb on - strand at 406.622 kb on - strand, within HMPREF1058_RS11300 at 406.645 kb on - strand, within HMPREF1058_RS11300 at 406.650 kb on - strand, within HMPREF1058_RS11300 at 406.716 kb on - strand, within HMPREF1058_RS11300 at 406.823 kb on - strand, within HMPREF1058_RS11300 at 406.944 kb on - strand, within HMPREF1058_RS11300 at 407.115 kb on - strand, within HMPREF1058_RS11300 at 407.117 kb on - strand, within HMPREF1058_RS11300 at 407.117 kb on - strand, within HMPREF1058_RS11300
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 404,781 - HMPREF1058_RS11315 0.14 +0.1 404,995 - HMPREF1058_RS11315 0.44 +1.4 404,995 - HMPREF1058_RS11315 0.44 +0.3 405,000 - HMPREF1058_RS11315 0.45 +0.9 405,000 - HMPREF1058_RS11315 0.45 +0.1 405,081 - HMPREF1058_RS11315 0.56 -0.7 405,099 - HMPREF1058_RS11315 0.59 +0.1 405,099 - HMPREF1058_RS11315 0.59 +0.6 405,099 - HMPREF1058_RS11315 0.59 +0.1 405,106 - HMPREF1058_RS11315 0.60 +0.2 405,106 - HMPREF1058_RS11315 0.60 -0.3 405,164 - HMPREF1058_RS11315 0.68 -0.4 405,179 - HMPREF1058_RS11315 0.70 +0.9 405,222 - HMPREF1058_RS11315 0.76 +0.5 405,250 - +0.9 405,303 - HMPREF1058_RS11315 0.88 -0.1 405,308 - HMPREF1058_RS11315 0.88 +0.3 405,308 - HMPREF1058_RS11315 0.88 +0.7 405,313 - HMPREF1058_RS11315 0.89 +0.9 405,313 - HMPREF1058_RS11315 0.89 +0.9 405,364 - +0.1 405,441 - -2.6 405,453 - -0.7 405,463 - -3.6 405,481 - HMPREF1058_RS11310 0.11 -1.9 405,493 - HMPREF1058_RS11310 0.12 -0.1 405,500 - HMPREF1058_RS11310 0.13 -2.6 405,548 - HMPREF1058_RS11310 0.19 -0.1 405,548 - HMPREF1058_RS11310 0.19 +0.6 405,554 - HMPREF1058_RS11310 0.20 -1.7 405,556 - HMPREF1058_RS11310 0.20 -1.1 405,622 - HMPREF1058_RS11310 0.28 -2.6 405,844 - HMPREF1058_RS11310 0.56 -1.8 405,844 - HMPREF1058_RS11310 0.56 -1.7 405,844 - HMPREF1058_RS11310 0.56 -4.1 405,844 - HMPREF1058_RS11310 0.56 -1.5 406,016 - HMPREF1058_RS11310 0.78 -3.9 406,019 - HMPREF1058_RS11310 0.78 -1.6 406,030 - HMPREF1058_RS11310 0.79 -2.6 406,088 - HMPREF1058_RS11310 0.87 -1.7 406,200 - +0.9 406,478 - -3.7 406,486 - +0.1 406,486 - -0.8 406,501 - +0.9 406,501 - -0.7 406,501 - -0.7 406,528 - -0.7 406,544 - +0.2 406,544 - -0.1 406,546 - +0.1 406,546 - -0.6 406,546 - +0.5 406,546 - +0.0 406,546 - -0.8 406,622 - HMPREF1058_RS11300 0.15 +0.4 406,645 - HMPREF1058_RS11300 0.18 +0.5 406,650 - HMPREF1058_RS11300 0.18 +1.7 406,716 - HMPREF1058_RS11300 0.26 +0.2 406,823 - HMPREF1058_RS11300 0.38 +0.1 406,944 - HMPREF1058_RS11300 0.52 +0.4 407,115 - HMPREF1058_RS11300 0.72 +0.1 407,117 - HMPREF1058_RS11300 0.72 +0.6 407,117 - HMPREF1058_RS11300 0.72 +0.3
Or see this region's nucleotide sequence