Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10565 and HMPREF1058_RS10560 are separated by 374 nucleotides HMPREF1058_RS10560 and HMPREF1058_RS10555 are separated by 73 nucleotides
HMPREF1058_RS10565: HMPREF1058_RS10565 - cysteine--tRNA ligase, at 625,253 to 626,734
_RS10565
HMPREF1058_RS10560: HMPREF1058_RS10560 - arabinan endo-1,5-alpha-L-arabinosidase, at 627,109 to 628,992
_RS10560
HMPREF1058_RS10555: HMPREF1058_RS10555 - bacterial Ig-like domain-containing protein, at 629,066 to 630,844
_RS10555
Position (kb) 627
628
629 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 626.735 kb on - strand at 626.769 kb on - strand at 626.778 kb on - strand at 626.789 kb on - strand at 626.865 kb on - strand at 626.873 kb on - strand at 626.873 kb on - strand at 626.873 kb on - strand at 626.968 kb on - strand at 626.998 kb on - strand at 627.078 kb on + strand at 627.078 kb on + strand at 627.079 kb on - strand at 627.111 kb on - strand at 627.131 kb on + strand at 627.257 kb on + strand at 627.257 kb on + strand at 627.257 kb on + strand at 627.258 kb on - strand at 627.295 kb on - strand at 627.355 kb on - strand, within HMPREF1058_RS10560 at 627.625 kb on - strand, within HMPREF1058_RS10560 at 627.755 kb on + strand, within HMPREF1058_RS10560 at 627.770 kb on + strand, within HMPREF1058_RS10560 at 627.966 kb on - strand, within HMPREF1058_RS10560 at 628.001 kb on + strand, within HMPREF1058_RS10560 at 628.002 kb on - strand, within HMPREF1058_RS10560 at 628.002 kb on - strand, within HMPREF1058_RS10560 at 628.002 kb on - strand, within HMPREF1058_RS10560 at 628.002 kb on - strand, within HMPREF1058_RS10560 at 628.026 kb on + strand, within HMPREF1058_RS10560 at 628.026 kb on + strand, within HMPREF1058_RS10560 at 628.068 kb on + strand, within HMPREF1058_RS10560 at 628.068 kb on + strand, within HMPREF1058_RS10560 at 628.069 kb on - strand, within HMPREF1058_RS10560 at 628.069 kb on - strand, within HMPREF1058_RS10560 at 628.069 kb on - strand, within HMPREF1058_RS10560 at 628.218 kb on - strand, within HMPREF1058_RS10560 at 628.220 kb on + strand, within HMPREF1058_RS10560 at 628.221 kb on - strand, within HMPREF1058_RS10560 at 628.244 kb on - strand, within HMPREF1058_RS10560 at 628.369 kb on - strand, within HMPREF1058_RS10560 at 628.466 kb on + strand, within HMPREF1058_RS10560 at 628.466 kb on + strand, within HMPREF1058_RS10560 at 628.467 kb on - strand, within HMPREF1058_RS10560 at 628.472 kb on + strand, within HMPREF1058_RS10560 at 628.476 kb on - strand, within HMPREF1058_RS10560 at 628.563 kb on + strand, within HMPREF1058_RS10560 at 628.564 kb on - strand, within HMPREF1058_RS10560 at 628.566 kb on - strand, within HMPREF1058_RS10560 at 628.577 kb on + strand, within HMPREF1058_RS10560 at 628.612 kb on + strand, within HMPREF1058_RS10560 at 628.619 kb on - strand, within HMPREF1058_RS10560 at 628.659 kb on - strand, within HMPREF1058_RS10560 at 628.679 kb on + strand, within HMPREF1058_RS10560 at 628.679 kb on + strand, within HMPREF1058_RS10560 at 628.680 kb on - strand, within HMPREF1058_RS10560 at 628.680 kb on - strand, within HMPREF1058_RS10560 at 628.680 kb on - strand, within HMPREF1058_RS10560 at 628.689 kb on + strand, within HMPREF1058_RS10560 at 628.691 kb on + strand, within HMPREF1058_RS10560 at 628.691 kb on + strand, within HMPREF1058_RS10560 at 628.873 kb on - strand at 628.877 kb on - strand at 628.891 kb on + strand at 628.892 kb on - strand at 628.901 kb on + strand at 629.155 kb on - strand at 629.332 kb on - strand, within HMPREF1058_RS10555 at 629.404 kb on + strand, within HMPREF1058_RS10555 at 629.408 kb on - strand, within HMPREF1058_RS10555 at 629.422 kb on - strand, within HMPREF1058_RS10555 at 629.517 kb on - strand, within HMPREF1058_RS10555 at 629.573 kb on + strand, within HMPREF1058_RS10555 at 629.663 kb on + strand, within HMPREF1058_RS10555 at 629.688 kb on + strand, within HMPREF1058_RS10555 at 629.766 kb on + strand, within HMPREF1058_RS10555 at 629.929 kb on + strand, within HMPREF1058_RS10555
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 626,735 - -1.5 626,769 - +0.8 626,778 - -0.4 626,789 - -1.0 626,865 - -1.1 626,873 - +0.8 626,873 - -0.9 626,873 - -0.3 626,968 - -1.7 626,998 - -0.7 627,078 + -1.1 627,078 + -0.2 627,079 - -0.4 627,111 - +0.3 627,131 + -1.7 627,257 + -3.5 627,257 + -2.4 627,257 + -3.7 627,258 - -2.1 627,295 - -2.6 627,355 - HMPREF1058_RS10560 0.13 -3.5 627,625 - HMPREF1058_RS10560 0.27 -3.2 627,755 + HMPREF1058_RS10560 0.34 -3.5 627,770 + HMPREF1058_RS10560 0.35 -2.2 627,966 - HMPREF1058_RS10560 0.45 -5.0 628,001 + HMPREF1058_RS10560 0.47 -3.2 628,002 - HMPREF1058_RS10560 0.47 -1.3 628,002 - HMPREF1058_RS10560 0.47 -3.4 628,002 - HMPREF1058_RS10560 0.47 -2.1 628,002 - HMPREF1058_RS10560 0.47 -3.0 628,026 + HMPREF1058_RS10560 0.49 -2.7 628,026 + HMPREF1058_RS10560 0.49 -1.7 628,068 + HMPREF1058_RS10560 0.51 -3.9 628,068 + HMPREF1058_RS10560 0.51 -3.5 628,069 - HMPREF1058_RS10560 0.51 -2.7 628,069 - HMPREF1058_RS10560 0.51 -1.9 628,069 - HMPREF1058_RS10560 0.51 -3.3 628,218 - HMPREF1058_RS10560 0.59 -2.2 628,220 + HMPREF1058_RS10560 0.59 -3.8 628,221 - HMPREF1058_RS10560 0.59 -2.6 628,244 - HMPREF1058_RS10560 0.60 -2.5 628,369 - HMPREF1058_RS10560 0.67 -0.9 628,466 + HMPREF1058_RS10560 0.72 -1.3 628,466 + HMPREF1058_RS10560 0.72 -2.3 628,467 - HMPREF1058_RS10560 0.72 -2.5 628,472 + HMPREF1058_RS10560 0.72 -1.7 628,476 - HMPREF1058_RS10560 0.73 -3.1 628,563 + HMPREF1058_RS10560 0.77 -2.8 628,564 - HMPREF1058_RS10560 0.77 -3.0 628,566 - HMPREF1058_RS10560 0.77 -1.1 628,577 + HMPREF1058_RS10560 0.78 -2.7 628,612 + HMPREF1058_RS10560 0.80 -2.9 628,619 - HMPREF1058_RS10560 0.80 -2.0 628,659 - HMPREF1058_RS10560 0.82 -2.8 628,679 + HMPREF1058_RS10560 0.83 -2.3 628,679 + HMPREF1058_RS10560 0.83 -1.1 628,680 - HMPREF1058_RS10560 0.83 -3.3 628,680 - HMPREF1058_RS10560 0.83 -3.3 628,680 - HMPREF1058_RS10560 0.83 -2.8 628,689 + HMPREF1058_RS10560 0.84 -1.7 628,691 + HMPREF1058_RS10560 0.84 -4.3 628,691 + HMPREF1058_RS10560 0.84 -2.9 628,873 - -2.5 628,877 - -4.2 628,891 + -3.4 628,892 - -2.3 628,901 + -2.3 629,155 - -0.8 629,332 - HMPREF1058_RS10555 0.15 -0.5 629,404 + HMPREF1058_RS10555 0.19 -3.0 629,408 - HMPREF1058_RS10555 0.19 -0.9 629,422 - HMPREF1058_RS10555 0.20 -0.3 629,517 - HMPREF1058_RS10555 0.25 +0.2 629,573 + HMPREF1058_RS10555 0.28 -1.7 629,663 + HMPREF1058_RS10555 0.34 -3.3 629,688 + HMPREF1058_RS10555 0.35 -3.0 629,766 + HMPREF1058_RS10555 0.39 -1.8 629,929 + HMPREF1058_RS10555 0.49 -3.1
Or see this region's nucleotide sequence