Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10550

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10555 and HMPREF1058_RS10550 are separated by 24 nucleotidesHMPREF1058_RS10550 and HMPREF1058_RS10545 are separated by 19 nucleotides HMPREF1058_RS10555: HMPREF1058_RS10555 - bacterial Ig-like domain-containing protein, at 629,066 to 630,844 _RS10555 HMPREF1058_RS10550: HMPREF1058_RS10550 - RagB/SusD family nutrient uptake outer membrane protein, at 630,869 to 632,620 _RS10550 HMPREF1058_RS10545: HMPREF1058_RS10545 - TonB-dependent receptor, at 632,640 to 635,849 _RS10545 Position (kb) 630 631 632 633Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 629.929 kb on + strand, within HMPREF1058_RS10555at 630.007 kb on + strand, within HMPREF1058_RS10555at 630.150 kb on + strand, within HMPREF1058_RS10555at 630.222 kb on + strand, within HMPREF1058_RS10555at 630.308 kb on + strand, within HMPREF1058_RS10555at 630.309 kb on - strand, within HMPREF1058_RS10555at 630.329 kb on + strand, within HMPREF1058_RS10555at 630.415 kb on + strand, within HMPREF1058_RS10555at 630.416 kb on - strand, within HMPREF1058_RS10555at 630.416 kb on - strand, within HMPREF1058_RS10555at 630.417 kb on + strand, within HMPREF1058_RS10555at 630.428 kb on - strand, within HMPREF1058_RS10555at 630.460 kb on - strand, within HMPREF1058_RS10555at 630.529 kb on + strand, within HMPREF1058_RS10555at 630.594 kb on + strand, within HMPREF1058_RS10555at 630.595 kb on - strand, within HMPREF1058_RS10555at 630.819 kb on + strandat 630.819 kb on + strandat 630.820 kb on - strandat 630.829 kb on + strandat 630.858 kb on - strandat 630.861 kb on - strandat 630.926 kb on - strandat 630.926 kb on - strandat 630.940 kb on + strandat 630.941 kb on - strandat 630.962 kb on + strandat 630.963 kb on - strandat 630.963 kb on - strandat 630.992 kb on + strandat 631.023 kb on + strandat 631.023 kb on + strandat 631.023 kb on + strandat 631.043 kb on + strandat 631.077 kb on - strand, within HMPREF1058_RS10550at 631.256 kb on - strand, within HMPREF1058_RS10550at 631.418 kb on + strand, within HMPREF1058_RS10550at 631.441 kb on - strand, within HMPREF1058_RS10550at 631.441 kb on - strand, within HMPREF1058_RS10550at 631.479 kb on - strand, within HMPREF1058_RS10550at 631.522 kb on + strand, within HMPREF1058_RS10550at 631.522 kb on + strandat 631.541 kb on + strand, within HMPREF1058_RS10550at 631.541 kb on + strand, within HMPREF1058_RS10550at 631.541 kb on + strand, within HMPREF1058_RS10550at 631.542 kb on - strand, within HMPREF1058_RS10550at 631.542 kb on - strand, within HMPREF1058_RS10550at 631.542 kb on - strand, within HMPREF1058_RS10550at 631.578 kb on + strand, within HMPREF1058_RS10550at 631.579 kb on - strand, within HMPREF1058_RS10550at 631.579 kb on - strand, within HMPREF1058_RS10550at 631.582 kb on + strand, within HMPREF1058_RS10550at 631.628 kb on - strand, within HMPREF1058_RS10550at 631.650 kb on + strand, within HMPREF1058_RS10550at 631.881 kb on + strand, within HMPREF1058_RS10550at 631.881 kb on + strand, within HMPREF1058_RS10550at 632.088 kb on + strand, within HMPREF1058_RS10550at 632.089 kb on - strand, within HMPREF1058_RS10550at 632.107 kb on - strand, within HMPREF1058_RS10550at 632.182 kb on - strand, within HMPREF1058_RS10550at 632.184 kb on + strand, within HMPREF1058_RS10550at 632.285 kb on + strand, within HMPREF1058_RS10550at 632.298 kb on + strand, within HMPREF1058_RS10550at 632.301 kb on + strand, within HMPREF1058_RS10550at 632.301 kb on + strand, within HMPREF1058_RS10550at 632.370 kb on + strand, within HMPREF1058_RS10550at 632.375 kb on + strand, within HMPREF1058_RS10550at 632.376 kb on - strand, within HMPREF1058_RS10550at 632.466 kb on + strandat 632.541 kb on - strandat 632.621 kb on - strandat 632.641 kb on + strandat 632.699 kb on + strandat 632.699 kb on + strandat 632.700 kb on - strandat 632.702 kb on - strandat 632.729 kb on - strandat 632.786 kb on - strandat 632.807 kb on - strandat 632.847 kb on + strandat 632.935 kb on + strandat 632.935 kb on + strandat 632.935 kb on + strandat 632.947 kb on - strandat 633.067 kb on + strand, within HMPREF1058_RS10545at 633.113 kb on - strand, within HMPREF1058_RS10545at 633.146 kb on + strandat 633.186 kb on + strand, within HMPREF1058_RS10545at 633.187 kb on - strand, within HMPREF1058_RS10545at 633.229 kb on + strand, within HMPREF1058_RS10545at 633.229 kb on + strand, within HMPREF1058_RS10545at 633.230 kb on - strand, within HMPREF1058_RS10545at 633.308 kb on - strand, within HMPREF1058_RS10545at 633.342 kb on + strand, within HMPREF1058_RS10545at 633.342 kb on + strand, within HMPREF1058_RS10545at 633.343 kb on - strand, within HMPREF1058_RS10545at 633.355 kb on + strand, within HMPREF1058_RS10545at 633.371 kb on - strand, within HMPREF1058_RS10545at 633.420 kb on + strand, within HMPREF1058_RS10545at 633.471 kb on - strand, within HMPREF1058_RS10545at 633.519 kb on + strand, within HMPREF1058_RS10545at 633.566 kb on - strand, within HMPREF1058_RS10545at 633.566 kb on - strand, within HMPREF1058_RS10545at 633.592 kb on + strand, within HMPREF1058_RS10545

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Per-strain Table

Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
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629,929 + HMPREF1058_RS10555 0.49 -3.1
630,007 + HMPREF1058_RS10555 0.53 -3.8
630,150 + HMPREF1058_RS10555 0.61 -3.2
630,222 + HMPREF1058_RS10555 0.65 -1.3
630,308 + HMPREF1058_RS10555 0.70 -2.9
630,309 - HMPREF1058_RS10555 0.70 -1.6
630,329 + HMPREF1058_RS10555 0.71 -3.0
630,415 + HMPREF1058_RS10555 0.76 -1.1
630,416 - HMPREF1058_RS10555 0.76 -1.7
630,416 - HMPREF1058_RS10555 0.76 -2.9
630,417 + HMPREF1058_RS10555 0.76 -1.3
630,428 - HMPREF1058_RS10555 0.77 -1.6
630,460 - HMPREF1058_RS10555 0.78 -1.2
630,529 + HMPREF1058_RS10555 0.82 -2.1
630,594 + HMPREF1058_RS10555 0.86 -2.2
630,595 - HMPREF1058_RS10555 0.86 -1.3
630,819 + -1.6
630,819 + -1.3
630,820 - -0.7
630,829 + -2.1
630,858 - -0.7
630,861 - -0.3
630,926 - -1.0
630,926 - -0.1
630,940 + -1.3
630,941 - -2.0
630,962 + -1.4
630,963 - -2.6
630,963 - -1.4
630,992 + -2.3
631,023 + -0.1
631,023 + -1.1
631,023 + -2.9
631,043 + -2.3
631,077 - HMPREF1058_RS10550 0.12 -2.2
631,256 - HMPREF1058_RS10550 0.22 -1.1
631,418 + HMPREF1058_RS10550 0.31 -2.1
631,441 - HMPREF1058_RS10550 0.33 -0.9
631,441 - HMPREF1058_RS10550 0.33 -2.6
631,479 - HMPREF1058_RS10550 0.35 -2.3
631,522 + HMPREF1058_RS10550 0.37 -2.2
631,522 + +0.9
631,541 + HMPREF1058_RS10550 0.38 -1.7
631,541 + HMPREF1058_RS10550 0.38 -1.1
631,541 + HMPREF1058_RS10550 0.38 -4.2
631,542 - HMPREF1058_RS10550 0.38 -3.4
631,542 - HMPREF1058_RS10550 0.38 -2.0
631,542 - HMPREF1058_RS10550 0.38 -1.9
631,578 + HMPREF1058_RS10550 0.40 -0.9
631,579 - HMPREF1058_RS10550 0.41 -2.6
631,579 - HMPREF1058_RS10550 0.41 -2.8
631,582 + HMPREF1058_RS10550 0.41 -2.2
631,628 - HMPREF1058_RS10550 0.43 -2.2
631,650 + HMPREF1058_RS10550 0.45 -2.1
631,881 + HMPREF1058_RS10550 0.58 -1.7
631,881 + HMPREF1058_RS10550 0.58 -2.9
632,088 + HMPREF1058_RS10550 0.70 -1.9
632,089 - HMPREF1058_RS10550 0.70 -1.9
632,107 - HMPREF1058_RS10550 0.71 -3.1
632,182 - HMPREF1058_RS10550 0.75 -2.0
632,184 + HMPREF1058_RS10550 0.75 -1.7
632,285 + HMPREF1058_RS10550 0.81 -1.1
632,298 + HMPREF1058_RS10550 0.82 -2.4
632,301 + HMPREF1058_RS10550 0.82 -1.9
632,301 + HMPREF1058_RS10550 0.82 -3.4
632,370 + HMPREF1058_RS10550 0.86 -1.7
632,375 + HMPREF1058_RS10550 0.86 -0.5
632,376 - HMPREF1058_RS10550 0.86 -2.1
632,466 + -0.9
632,541 - -2.2
632,621 - -1.9
632,641 + -2.5
632,699 + -1.9
632,699 + -1.5
632,700 - -2.1
632,702 - -2.1
632,729 - -0.7
632,786 - -0.1
632,807 - -1.7
632,847 + -1.4
632,935 + +0.3
632,935 + -2.2
632,935 + -3.9
632,947 - -1.4
633,067 + HMPREF1058_RS10545 0.13 -2.6
633,113 - HMPREF1058_RS10545 0.15 -2.4
633,146 + +0.9
633,186 + HMPREF1058_RS10545 0.17 -2.0
633,187 - HMPREF1058_RS10545 0.17 -2.0
633,229 + HMPREF1058_RS10545 0.18 -1.1
633,229 + HMPREF1058_RS10545 0.18 -1.0
633,230 - HMPREF1058_RS10545 0.18 -2.6
633,308 - HMPREF1058_RS10545 0.21 -1.1
633,342 + HMPREF1058_RS10545 0.22 -0.7
633,342 + HMPREF1058_RS10545 0.22 -1.1
633,343 - HMPREF1058_RS10545 0.22 -1.5
633,355 + HMPREF1058_RS10545 0.22 -2.6
633,371 - HMPREF1058_RS10545 0.23 -1.5
633,420 + HMPREF1058_RS10545 0.24 -2.5
633,471 - HMPREF1058_RS10545 0.26 +0.6
633,519 + HMPREF1058_RS10545 0.27 -3.9
633,566 - HMPREF1058_RS10545 0.29 -2.0
633,566 - HMPREF1058_RS10545 0.29 -0.6
633,592 + HMPREF1058_RS10545 0.30 -2.9

Or see this region's nucleotide sequence