Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08890

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
1,005,877	-		HMPREF1058_RS08895	0.42	-0.2
1,005,961	+		HMPREF1058_RS08895	0.47	+0.3
1,005,961	+		HMPREF1058_RS08895	0.47	+0.3
1,005,961	+		HMPREF1058_RS08895	0.47	+0.0
1,005,961	+		HMPREF1058_RS08895	0.47	-0.4
1,005,981	-		HMPREF1058_RS08895	0.49	+0.1
1,005,993	+		HMPREF1058_RS08895	0.49	-0.9
1,005,993	+		HMPREF1058_RS08895	0.49	-1.2
1,005,994	-		HMPREF1058_RS08895	0.49	-0.5
1,005,994	-		HMPREF1058_RS08895	0.49	+0.1
1,006,000	+		HMPREF1058_RS08895	0.50	-0.4
1,006,000	+		HMPREF1058_RS08895	0.50	+0.0
1,006,001	-		HMPREF1058_RS08895	0.50	-0.2
1,006,001	-		HMPREF1058_RS08895	0.50	-0.1
1,006,049	+		HMPREF1058_RS08895	0.53	+0.3
1,006,071	-		HMPREF1058_RS08895	0.54	+0.2
1,006,073	+		HMPREF1058_RS08895	0.55	+0.5
1,006,074	-		HMPREF1058_RS08895	0.55	+0.5
1,006,074	-		HMPREF1058_RS08895	0.55	+1.3
1,006,096	+		HMPREF1058_RS08895	0.56	-0.4
1,006,179	-		HMPREF1058_RS08895	0.62	-2.3
1,006,192	-		HMPREF1058_RS08895	0.62	-0.8
1,006,192	-		HMPREF1058_RS08895	0.62	-1.1
1,006,246	+		HMPREF1058_RS08895	0.66	-0.1
1,006,246	+		HMPREF1058_RS08895	0.66	-1.1
1,006,264	+		HMPREF1058_RS08895	0.67	+2.4
1,006,286	-		HMPREF1058_RS08895	0.69	-1.1
1,006,286	-		HMPREF1058_RS08895	0.69	-1.9
1,006,427	+		HMPREF1058_RS08895	0.78	-1.2
1,006,427	+		HMPREF1058_RS08895	0.78	+0.2
1,006,428	-		HMPREF1058_RS08895	0.78	-2.4
1,006,466	+		HMPREF1058_RS08895	0.81	-0.0
1,006,466	+		HMPREF1058_RS08895	0.81	+0.8
1,006,467	-		HMPREF1058_RS08895	0.81	+0.2
1,006,529	+		HMPREF1058_RS08895	0.85	-1.0
1,006,759	-				-0.4
1,006,759	-				+0.9
1,006,759	-				+0.2
1,006,759	-				-0.2
1,006,798	+				-0.8
1,006,799	-				+0.1
1,006,815	-				-0.2
1,006,816	+				+0.1
1,006,817	-				-0.9
1,006,817	-				+0.2
1,006,817	-				+0.4
1,006,825	-				-0.5
1,006,887	+				-0.2
1,006,888	-				+0.9
1,006,935	+		HMPREF1058_RS08890	0.14	-0.4
1,006,935	+		HMPREF1058_RS08890	0.14	+2.3
1,006,935	+		HMPREF1058_RS08890	0.14	-0.9
1,006,936	-		HMPREF1058_RS08890	0.14	-0.0
1,006,979	-		HMPREF1058_RS08890	0.23	+0.8
1,007,033	+		HMPREF1058_RS08890	0.34	-0.4
1,007,034	-		HMPREF1058_RS08890	0.34	+1.1
1,007,035	+		HMPREF1058_RS08890	0.34	+0.3
1,007,035	+		HMPREF1058_RS08890	0.34	+0.6
1,007,035	+		HMPREF1058_RS08890	0.34	-0.1
1,007,035	+		HMPREF1058_RS08890	0.34	+0.1
1,007,134	+		HMPREF1058_RS08890	0.54	+0.2
1,007,304	-		HMPREF1058_RS08890	0.88	+0.3
1,007,308	-		HMPREF1058_RS08890	0.89	+1.1
1,007,313	-		HMPREF1058_RS08890	0.90	-0.2
1,007,363	+				-0.1
1,007,416	+				-0.6