Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06610 and HMPREF1058_RS06605 are separated by 148 nucleotides HMPREF1058_RS06605 and HMPREF1058_RS06600 are separated by 68 nucleotides HMPREF1058_RS06600 and HMPREF1058_RS06595 are separated by 7 nucleotides
HMPREF1058_RS06610: HMPREF1058_RS06610 - GDP-L-fucose synthase, at 437,867 to 438,943
_RS06610
HMPREF1058_RS06605: HMPREF1058_RS06605 - thiol peroxidase, at 439,092 to 439,595
_RS06605
HMPREF1058_RS06600: HMPREF1058_RS06600 - DedA family protein, at 439,664 to 440,290
_RS06600
HMPREF1058_RS06595: HMPREF1058_RS06595 - hypothetical protein, at 440,298 to 441,815
_RS06595
Position (kb) 439
440
441 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 438.683 kb on + strand, within HMPREF1058_RS06610 at 438.684 kb on - strand, within HMPREF1058_RS06610 at 438.838 kb on + strand at 438.894 kb on + strand at 438.895 kb on - strand at 438.917 kb on + strand at 438.934 kb on + strand at 438.958 kb on - strand at 439.009 kb on + strand at 439.041 kb on + strand at 439.042 kb on - strand at 439.120 kb on + strand at 439.121 kb on - strand at 439.157 kb on + strand, within HMPREF1058_RS06605 at 439.158 kb on - strand, within HMPREF1058_RS06605 at 439.160 kb on - strand, within HMPREF1058_RS06605 at 439.236 kb on + strand, within HMPREF1058_RS06605 at 439.237 kb on - strand, within HMPREF1058_RS06605 at 439.237 kb on - strand, within HMPREF1058_RS06605 at 439.237 kb on - strand, within HMPREF1058_RS06605 at 439.265 kb on + strand, within HMPREF1058_RS06605 at 439.265 kb on + strand, within HMPREF1058_RS06605 at 439.347 kb on - strand, within HMPREF1058_RS06605 at 439.485 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.577 kb on + strand at 439.578 kb on - strand at 439.578 kb on - strand at 439.701 kb on - strand at 439.715 kb on + strand at 439.716 kb on - strand at 439.731 kb on - strand, within HMPREF1058_RS06600 at 439.829 kb on - strand, within HMPREF1058_RS06600 at 439.848 kb on + strand, within HMPREF1058_RS06600 at 439.901 kb on - strand, within HMPREF1058_RS06600 at 440.037 kb on + strand, within HMPREF1058_RS06600 at 440.062 kb on - strand, within HMPREF1058_RS06600 at 440.070 kb on + strand, within HMPREF1058_RS06600 at 440.420 kb on + strand at 440.509 kb on + strand, within HMPREF1058_RS06595 at 440.510 kb on - strand, within HMPREF1058_RS06595 at 440.596 kb on - strand, within HMPREF1058_RS06595 at 440.730 kb on + strand, within HMPREF1058_RS06595 at 440.802 kb on - strand, within HMPREF1058_RS06595 at 440.802 kb on - strand, within HMPREF1058_RS06595 at 440.804 kb on - strand, within HMPREF1058_RS06595 at 440.863 kb on - strand, within HMPREF1058_RS06595 at 440.918 kb on + strand, within HMPREF1058_RS06595 at 440.957 kb on - strand, within HMPREF1058_RS06595 at 441.263 kb on - strand, within HMPREF1058_RS06595
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 438,683 + HMPREF1058_RS06610 0.76 +0.4 438,684 - HMPREF1058_RS06610 0.76 -1.6 438,838 + -1.2 438,894 + +0.6 438,895 - +0.2 438,917 + -0.6 438,934 + +0.0 438,958 - +0.9 439,009 + +0.9 439,041 + +2.1 439,042 - +0.7 439,120 + +1.4 439,121 - +0.2 439,157 + HMPREF1058_RS06605 0.13 +1.3 439,158 - HMPREF1058_RS06605 0.13 -0.3 439,160 - HMPREF1058_RS06605 0.13 +0.7 439,236 + HMPREF1058_RS06605 0.29 -0.0 439,237 - HMPREF1058_RS06605 0.29 +1.5 439,237 - HMPREF1058_RS06605 0.29 -0.9 439,237 - HMPREF1058_RS06605 0.29 -0.6 439,265 + HMPREF1058_RS06605 0.34 -0.5 439,265 + HMPREF1058_RS06605 0.34 +0.3 439,347 - HMPREF1058_RS06605 0.51 -0.1 439,485 - HMPREF1058_RS06605 0.78 +0.6 439,487 - HMPREF1058_RS06605 0.78 +0.2 439,487 - HMPREF1058_RS06605 0.78 -1.1 439,487 - HMPREF1058_RS06605 0.78 -1.0 439,487 - HMPREF1058_RS06605 0.78 +1.0 439,577 + +0.2 439,578 - +0.4 439,578 - +0.3 439,701 - +1.0 439,715 + +1.4 439,716 - -2.2 439,731 - HMPREF1058_RS06600 0.11 -3.9 439,829 - HMPREF1058_RS06600 0.26 +0.4 439,848 + HMPREF1058_RS06600 0.29 -1.2 439,901 - HMPREF1058_RS06600 0.38 +0.4 440,037 + HMPREF1058_RS06600 0.59 -0.6 440,062 - HMPREF1058_RS06600 0.63 -1.6 440,070 + HMPREF1058_RS06600 0.65 -0.9 440,420 + -0.2 440,509 + HMPREF1058_RS06595 0.14 -3.7 440,510 - HMPREF1058_RS06595 0.14 -0.3 440,596 - HMPREF1058_RS06595 0.20 -1.3 440,730 + HMPREF1058_RS06595 0.28 +1.4 440,802 - HMPREF1058_RS06595 0.33 -1.1 440,802 - HMPREF1058_RS06595 0.33 -1.8 440,804 - HMPREF1058_RS06595 0.33 -0.6 440,863 - HMPREF1058_RS06595 0.37 -0.6 440,918 + HMPREF1058_RS06595 0.41 -1.6 440,957 - HMPREF1058_RS06595 0.43 -2.5 441,263 - HMPREF1058_RS06595 0.64 -0.6
Or see this region's nucleotide sequence