Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06330

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06335 and HMPREF1058_RS06330 overlap by 4 nucleotidesHMPREF1058_RS06330 and HMPREF1058_RS06325 are separated by 14 nucleotidesHMPREF1058_RS06325 and HMPREF1058_RS06320 are separated by 18 nucleotides HMPREF1058_RS06335: HMPREF1058_RS06335 - RnfABCDGE type electron transport complex subunit D, at 504,236 to 505,225 _RS06335 HMPREF1058_RS06330: HMPREF1058_RS06330 - RnfABCDGE type electron transport complex subunit G, at 505,222 to 506,016 _RS06330 HMPREF1058_RS06325: HMPREF1058_RS06325 - electron transport complex subunit E, at 506,031 to 506,615 _RS06325 HMPREF1058_RS06320: HMPREF1058_RS06320 - electron transport complex subunit RsxA, at 506,634 to 507,236 _RS06320 Position (kb) 505 506 507Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 504.236 kb on - strandat 504.236 kb on - strandat 504.236 kb on - strandat 504.250 kb on - strandat 504.252 kb on + strandat 504.255 kb on + strandat 504.291 kb on + strandat 504.291 kb on + strandat 504.292 kb on - strandat 504.301 kb on + strandat 504.302 kb on - strandat 504.302 kb on - strandat 504.305 kb on + strandat 504.306 kb on - strandat 504.306 kb on - strandat 504.327 kb on + strandat 504.454 kb on + strand, within HMPREF1058_RS06335at 504.478 kb on + strand, within HMPREF1058_RS06335at 504.480 kb on + strand, within HMPREF1058_RS06335at 504.481 kb on - strand, within HMPREF1058_RS06335at 504.692 kb on + strand, within HMPREF1058_RS06335at 504.715 kb on + strand, within HMPREF1058_RS06335at 504.766 kb on - strand, within HMPREF1058_RS06335at 504.786 kb on + strand, within HMPREF1058_RS06335at 504.786 kb on + strand, within HMPREF1058_RS06335at 504.787 kb on - strand, within HMPREF1058_RS06335at 504.787 kb on - strand, within HMPREF1058_RS06335at 504.787 kb on - strand, within HMPREF1058_RS06335at 504.819 kb on + strand, within HMPREF1058_RS06335at 504.862 kb on + strand, within HMPREF1058_RS06335at 504.862 kb on + strand, within HMPREF1058_RS06335at 504.862 kb on + strand, within HMPREF1058_RS06335at 504.862 kb on + strand, within HMPREF1058_RS06335at 504.862 kb on + strand, within HMPREF1058_RS06335at 504.863 kb on - strand, within HMPREF1058_RS06335at 504.863 kb on - strand, within HMPREF1058_RS06335at 504.863 kb on - strand, within HMPREF1058_RS06335at 504.901 kb on - strand, within HMPREF1058_RS06335at 504.919 kb on - strand, within HMPREF1058_RS06335at 504.919 kb on - strand, within HMPREF1058_RS06335at 504.988 kb on + strand, within HMPREF1058_RS06335at 504.988 kb on + strand, within HMPREF1058_RS06335at 505.031 kb on + strand, within HMPREF1058_RS06335at 505.031 kb on + strand, within HMPREF1058_RS06335at 505.036 kb on + strand, within HMPREF1058_RS06335at 505.036 kb on + strand, within HMPREF1058_RS06335at 505.036 kb on + strand, within HMPREF1058_RS06335at 505.037 kb on - strand, within HMPREF1058_RS06335at 505.037 kb on - strand, within HMPREF1058_RS06335at 505.054 kb on + strand, within HMPREF1058_RS06335at 505.067 kb on - strand, within HMPREF1058_RS06335at 505.067 kb on - strand, within HMPREF1058_RS06335at 505.133 kb on - strandat 505.147 kb on - strandat 505.184 kb on + strandat 505.189 kb on + strandat 505.195 kb on + strandat 505.443 kb on + strand, within HMPREF1058_RS06330at 505.444 kb on - strand, within HMPREF1058_RS06330at 505.444 kb on - strand, within HMPREF1058_RS06330at 505.452 kb on + strand, within HMPREF1058_RS06330at 505.557 kb on + strand, within HMPREF1058_RS06330at 505.558 kb on - strand, within HMPREF1058_RS06330at 505.568 kb on - strand, within HMPREF1058_RS06330at 505.568 kb on - strand, within HMPREF1058_RS06330at 505.627 kb on - strand, within HMPREF1058_RS06330at 505.656 kb on + strand, within HMPREF1058_RS06330at 505.685 kb on + strand, within HMPREF1058_RS06330at 505.779 kb on + strand, within HMPREF1058_RS06330at 505.779 kb on + strand, within HMPREF1058_RS06330at 505.780 kb on - strand, within HMPREF1058_RS06330at 505.972 kb on - strandat 506.030 kb on + strandat 506.108 kb on + strand, within HMPREF1058_RS06325at 506.191 kb on + strand, within HMPREF1058_RS06325at 506.201 kb on + strand, within HMPREF1058_RS06325at 506.231 kb on + strand, within HMPREF1058_RS06325at 506.232 kb on - strand, within HMPREF1058_RS06325at 506.295 kb on + strand, within HMPREF1058_RS06325at 506.330 kb on + strand, within HMPREF1058_RS06325at 506.470 kb on + strand, within HMPREF1058_RS06325at 506.471 kb on - strand, within HMPREF1058_RS06325at 506.598 kb on - strandat 506.641 kb on - strandat 506.641 kb on - strandat 506.643 kb on - strandat 506.644 kb on + strandat 506.644 kb on + strandat 506.651 kb on - strandat 506.655 kb on - strandat 506.744 kb on + strand, within HMPREF1058_RS06320at 506.795 kb on + strand, within HMPREF1058_RS06320at 506.799 kb on + strand, within HMPREF1058_RS06320at 506.799 kb on + strand, within HMPREF1058_RS06320at 506.799 kb on + strand, within HMPREF1058_RS06320at 506.800 kb on - strand, within HMPREF1058_RS06320at 506.805 kb on - strand, within HMPREF1058_RS06320at 506.885 kb on - strand, within HMPREF1058_RS06320at 506.914 kb on + strand, within HMPREF1058_RS06320at 506.915 kb on - strand, within HMPREF1058_RS06320

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Per-strain Table

Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
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504,236 - -1.2
504,236 - -1.4
504,236 - -2.8
504,250 - -0.4
504,252 + -1.2
504,255 + -2.7
504,291 + -1.8
504,291 + -2.5
504,292 - -0.4
504,301 + -2.2
504,302 - +0.4
504,302 - -1.4
504,305 + -2.1
504,306 - -1.2
504,306 - -0.6
504,327 + -1.2
504,454 + HMPREF1058_RS06335 0.22 -3.3
504,478 + HMPREF1058_RS06335 0.24 -1.0
504,480 + HMPREF1058_RS06335 0.25 -0.9
504,481 - HMPREF1058_RS06335 0.25 -2.2
504,692 + HMPREF1058_RS06335 0.46 -1.4
504,715 + HMPREF1058_RS06335 0.48 -0.9
504,766 - HMPREF1058_RS06335 0.54 -0.2
504,786 + HMPREF1058_RS06335 0.56 -2.5
504,786 + HMPREF1058_RS06335 0.56 -0.6
504,787 - HMPREF1058_RS06335 0.56 -2.1
504,787 - HMPREF1058_RS06335 0.56 -0.2
504,787 - HMPREF1058_RS06335 0.56 -2.4
504,819 + HMPREF1058_RS06335 0.59 -2.9
504,862 + HMPREF1058_RS06335 0.63 -1.2
504,862 + HMPREF1058_RS06335 0.63 -1.4
504,862 + HMPREF1058_RS06335 0.63 -0.9
504,862 + HMPREF1058_RS06335 0.63 -0.9
504,862 + HMPREF1058_RS06335 0.63 -1.8
504,863 - HMPREF1058_RS06335 0.63 -2.6
504,863 - HMPREF1058_RS06335 0.63 +2.4
504,863 - HMPREF1058_RS06335 0.63 -0.2
504,901 - HMPREF1058_RS06335 0.67 -0.9
504,919 - HMPREF1058_RS06335 0.69 -1.1
504,919 - HMPREF1058_RS06335 0.69 -1.6
504,988 + HMPREF1058_RS06335 0.76 -0.9
504,988 + HMPREF1058_RS06335 0.76 -2.1
505,031 + HMPREF1058_RS06335 0.80 -2.3
505,031 + HMPREF1058_RS06335 0.80 -0.2
505,036 + HMPREF1058_RS06335 0.81 +1.4
505,036 + HMPREF1058_RS06335 0.81 -1.4
505,036 + HMPREF1058_RS06335 0.81 -2.6
505,037 - HMPREF1058_RS06335 0.81 +0.4
505,037 - HMPREF1058_RS06335 0.81 -0.5
505,054 + HMPREF1058_RS06335 0.83 -2.8
505,067 - HMPREF1058_RS06335 0.84 +0.4
505,067 - HMPREF1058_RS06335 0.84 -2.5
505,133 - -0.2
505,147 - -0.8
505,184 + -2.1
505,189 + +0.4
505,195 + -0.9
505,443 + HMPREF1058_RS06330 0.28 -2.3
505,444 - HMPREF1058_RS06330 0.28 -0.9
505,444 - HMPREF1058_RS06330 0.28 -1.4
505,452 + HMPREF1058_RS06330 0.29 -2.5
505,557 + HMPREF1058_RS06330 0.42 +0.4
505,558 - HMPREF1058_RS06330 0.42 -1.2
505,568 - HMPREF1058_RS06330 0.44 -1.2
505,568 - HMPREF1058_RS06330 0.44 -1.8
505,627 - HMPREF1058_RS06330 0.51 -1.4
505,656 + HMPREF1058_RS06330 0.55 -1.4
505,685 + HMPREF1058_RS06330 0.58 -3.3
505,779 + HMPREF1058_RS06330 0.70 -2.2
505,779 + HMPREF1058_RS06330 0.70 -0.5
505,780 - HMPREF1058_RS06330 0.70 -4.1
505,972 - -0.2
506,030 + +0.8
506,108 + HMPREF1058_RS06325 0.13 +1.4
506,191 + HMPREF1058_RS06325 0.27 -1.3
506,201 + HMPREF1058_RS06325 0.29 -0.9
506,231 + HMPREF1058_RS06325 0.34 -2.7
506,232 - HMPREF1058_RS06325 0.34 -0.6
506,295 + HMPREF1058_RS06325 0.45 -0.9
506,330 + HMPREF1058_RS06325 0.51 -0.4
506,470 + HMPREF1058_RS06325 0.75 -1.9
506,471 - HMPREF1058_RS06325 0.75 -2.1
506,598 - -1.2
506,641 - +1.4
506,641 - -0.6
506,643 - -4.3
506,644 + -0.2
506,644 + -1.1
506,651 - -1.8
506,655 - -2.3
506,744 + HMPREF1058_RS06320 0.18 -0.9
506,795 + HMPREF1058_RS06320 0.27 -1.2
506,799 + HMPREF1058_RS06320 0.27 -0.9
506,799 + HMPREF1058_RS06320 0.27 -0.9
506,799 + HMPREF1058_RS06320 0.27 -2.4
506,800 - HMPREF1058_RS06320 0.28 -0.6
506,805 - HMPREF1058_RS06320 0.28 -1.2
506,885 - HMPREF1058_RS06320 0.42 -1.5
506,914 + HMPREF1058_RS06320 0.46 -1.6
506,915 - HMPREF1058_RS06320 0.47 -2.4

Or see this region's nucleotide sequence