Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06230 and HMPREF1058_RS06225 are separated by 165 nucleotides HMPREF1058_RS06225 and HMPREF1058_RS06220 are separated by 1 nucleotides
HMPREF1058_RS06230: HMPREF1058_RS06230 - fucose isomerase, at 529,711 to 530,946
_RS06230
HMPREF1058_RS06225: HMPREF1058_RS06225 - pyridoxal phosphate-dependent aminotransferase, at 531,112 to 532,314
_RS06225
HMPREF1058_RS06220: HMPREF1058_RS06220 - ABC transporter permease, at 532,316 to 533,560
_RS06220
Position (kb) 531
532
533 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 530.395 kb on + strand, within HMPREF1058_RS06230 at 530.396 kb on - strand, within HMPREF1058_RS06230 at 530.396 kb on - strand, within HMPREF1058_RS06230 at 530.396 kb on - strand, within HMPREF1058_RS06230 at 530.397 kb on + strand, within HMPREF1058_RS06230 at 530.397 kb on + strand, within HMPREF1058_RS06230 at 530.429 kb on + strand, within HMPREF1058_RS06230 at 530.430 kb on - strand, within HMPREF1058_RS06230 at 530.461 kb on + strand, within HMPREF1058_RS06230 at 530.489 kb on + strand, within HMPREF1058_RS06230 at 530.495 kb on - strand, within HMPREF1058_RS06230 at 530.628 kb on + strand, within HMPREF1058_RS06230 at 530.632 kb on - strand, within HMPREF1058_RS06230 at 530.632 kb on - strand, within HMPREF1058_RS06230 at 530.635 kb on + strand, within HMPREF1058_RS06230 at 530.635 kb on + strand, within HMPREF1058_RS06230 at 530.635 kb on + strand, within HMPREF1058_RS06230 at 530.664 kb on + strand, within HMPREF1058_RS06230 at 530.664 kb on + strand, within HMPREF1058_RS06230 at 530.665 kb on - strand, within HMPREF1058_RS06230 at 530.665 kb on - strand, within HMPREF1058_RS06230 at 530.668 kb on + strand, within HMPREF1058_RS06230 at 530.668 kb on + strand, within HMPREF1058_RS06230 at 530.826 kb on + strand at 530.826 kb on + strand at 530.827 kb on - strand at 530.827 kb on - strand at 530.828 kb on + strand at 530.829 kb on - strand at 530.829 kb on - strand at 530.872 kb on + strand at 530.894 kb on - strand at 530.939 kb on - strand at 530.997 kb on + strand at 531.046 kb on - strand at 531.075 kb on + strand at 531.092 kb on + strand at 531.111 kb on + strand at 531.487 kb on + strand, within HMPREF1058_RS06225 at 531.609 kb on + strand, within HMPREF1058_RS06225 at 531.703 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 530,395 + HMPREF1058_RS06230 0.55 -1.6 530,396 - HMPREF1058_RS06230 0.55 -1.3 530,396 - HMPREF1058_RS06230 0.55 +1.6 530,396 - HMPREF1058_RS06230 0.55 +0.6 530,397 + HMPREF1058_RS06230 0.56 -1.2 530,397 + HMPREF1058_RS06230 0.56 -1.5 530,429 + HMPREF1058_RS06230 0.58 -0.9 530,430 - HMPREF1058_RS06230 0.58 -0.2 530,461 + HMPREF1058_RS06230 0.61 -0.1 530,489 + HMPREF1058_RS06230 0.63 -0.2 530,495 - HMPREF1058_RS06230 0.63 -0.5 530,628 + HMPREF1058_RS06230 0.74 -0.7 530,632 - HMPREF1058_RS06230 0.75 -0.5 530,632 - HMPREF1058_RS06230 0.75 +0.0 530,635 + HMPREF1058_RS06230 0.75 -2.1 530,635 + HMPREF1058_RS06230 0.75 -0.7 530,635 + HMPREF1058_RS06230 0.75 -0.1 530,664 + HMPREF1058_RS06230 0.77 +2.2 530,664 + HMPREF1058_RS06230 0.77 -1.0 530,665 - HMPREF1058_RS06230 0.77 -0.1 530,665 - HMPREF1058_RS06230 0.77 +0.1 530,668 + HMPREF1058_RS06230 0.77 -0.1 530,668 + HMPREF1058_RS06230 0.77 +0.5 530,826 + +0.3 530,826 + -1.5 530,827 - -0.0 530,827 - -0.1 530,828 + +0.1 530,829 - -1.4 530,829 - -1.6 530,872 + +0.2 530,894 - -0.3 530,939 - -0.3 530,997 + -1.3 531,046 - -1.2 531,075 + -0.7 531,092 + -3.2 531,111 + -4.3 531,487 + HMPREF1058_RS06225 0.31 -2.2 531,609 + HMPREF1058_RS06225 0.41 -1.2 531,703 + HMPREF1058_RS06225 0.49 -0.6 531,756 + HMPREF1058_RS06225 0.54 -2.2 531,756 + HMPREF1058_RS06225 0.54 -1.4 531,756 + HMPREF1058_RS06225 0.54 -0.6 531,756 + HMPREF1058_RS06225 0.54 -0.2 531,756 + HMPREF1058_RS06225 0.54 -2.2 531,756 + HMPREF1058_RS06225 0.54 -2.2
Or see this region's nucleotide sequence