Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05755

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
85,162	+		HMPREF1058_RS05765	0.68	+0.5
85,349	-		HMPREF1058_RS05765	0.89	-1.3
85,349	-		HMPREF1058_RS05765	0.89	-2.5
85,353	-		HMPREF1058_RS05765	0.89	-2.2
85,444	-				-1.3
85,444	-				-1.3
85,455	+				+0.1
85,463	+				-0.1
85,467	+				-0.6
85,468	-				-3.8
85,468	-				-1.8
85,468	-				+1.1
85,596	+				+1.1
85,639	+				+1.4
85,649	-				-0.5
85,685	-				-1.5
85,693	-				-0.1
85,731	+		HMPREF1058_RS05760	0.16	+0.0
85,843	+		HMPREF1058_RS05760	0.39	+0.5
85,902	+		HMPREF1058_RS05760	0.51	-0.5
85,903	-				-1.3
85,950	+		HMPREF1058_RS05760	0.61	+0.5
85,969	+		HMPREF1058_RS05760	0.65	+1.2
85,970	-		HMPREF1058_RS05760	0.65	-2.2
86,011	+		HMPREF1058_RS05760	0.73	+1.7
86,031	+		HMPREF1058_RS05760	0.77	-0.0
86,057	-		HMPREF1058_RS05760	0.83	-0.1
86,119	-				-2.6
86,122	+				+0.1
86,219	-				-0.8
86,298	+				-1.3
86,299	-				-2.5
86,299	-				-1.9
86,300	+				-2.9
86,301	-				-2.6
86,481	+		HMPREF1058_RS05755	0.22	-2.4
86,482	-		HMPREF1058_RS05755	0.22	-2.3
86,545	+		HMPREF1058_RS05755	0.26	-0.8
86,559	+		HMPREF1058_RS05755	0.27	-1.8
86,582	-		HMPREF1058_RS05755	0.29	-2.9
86,593	-				-0.1
86,839	+		HMPREF1058_RS05755	0.46	-2.6
86,840	-		HMPREF1058_RS05755	0.46	-1.9
86,862	-		HMPREF1058_RS05755	0.47	-2.2
86,954	+		HMPREF1058_RS05755	0.54	-4.0
87,128	+		HMPREF1058_RS05755	0.65	-2.6
87,153	+		HMPREF1058_RS05755	0.67	-0.8
87,153	+		HMPREF1058_RS05755	0.67	+0.5
87,173	-		HMPREF1058_RS05755	0.68	-3.3
87,179	+		HMPREF1058_RS05755	0.69	-2.7
87,179	+		HMPREF1058_RS05755	0.69	-0.1
87,180	-		HMPREF1058_RS05755	0.69	-1.3
87,180	-		HMPREF1058_RS05755	0.69	-1.3
87,278	-		HMPREF1058_RS05755	0.75	-2.3
87,280	+		HMPREF1058_RS05755	0.75	-2.4
87,483	-		HMPREF1058_RS05755	0.89	-1.9
87,488	+		HMPREF1058_RS05755	0.89	-1.1
87,493	+		HMPREF1058_RS05755	0.90	-1.9
87,517	+				-0.3
87,544	+				-0.8
87,566	-				-2.9
87,590	+				+1.5
87,590	+				-0.8
87,591	-				-3.6
87,591	-				-0.5
87,679	+				-1.1
87,778	-				-0.0
88,067	+		HMPREF1058_RS05750	0.17	+0.5
88,139	+		HMPREF1058_RS05750	0.25	+2.3
88,144	-		HMPREF1058_RS05750	0.26	-0.1
88,150	+		HMPREF1058_RS05750	0.26	-0.6
88,150	+		HMPREF1058_RS05750	0.26	-1.2
88,150	+		HMPREF1058_RS05750	0.26	+0.4
88,151	-		HMPREF1058_RS05750	0.26	-1.3
88,151	-		HMPREF1058_RS05750	0.26	+0.4
88,154	+		HMPREF1058_RS05750	0.27	+0.7
88,154	+		HMPREF1058_RS05750	0.27	+0.0
88,154	+		HMPREF1058_RS05750	0.27	+0.3
88,154	+		HMPREF1058_RS05750	0.27	-1.3
88,154	+		HMPREF1058_RS05750	0.27	+0.4
88,155	-		HMPREF1058_RS05750	0.27	-0.4
88,155	-		HMPREF1058_RS05750	0.27	-0.1
88,158	+		HMPREF1058_RS05750	0.27	-0.6
88,258	+		HMPREF1058_RS05750	0.39	-1.0
88,304	-		HMPREF1058_RS05750	0.44	-0.9
88,361	-		HMPREF1058_RS05750	0.50	-2.0
88,362	+		HMPREF1058_RS05750	0.50	-0.0
88,409	-		HMPREF1058_RS05750	0.56	+1.9
88,412	-		HMPREF1058_RS05750	0.56	+0.2
88,448	-		HMPREF1058_RS05750	0.60	-2.4
88,553	+		HMPREF1058_RS05750	0.72	-1.1
88,554	-		HMPREF1058_RS05750	0.72	+0.1
88,554	-		HMPREF1058_RS05750	0.72	-1.0
88,645	+		HMPREF1058_RS05750	0.83	-0.6