Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04655

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS04660 and HMPREF1058_RS04655 are separated by 106 nucleotidesHMPREF1058_RS04655 and HMPREF1058_RS04650 are separated by 37 nucleotides HMPREF1058_RS04660: HMPREF1058_RS04660 - response regulator, at 339,593 to 343,582 _RS04660 HMPREF1058_RS04655: HMPREF1058_RS04655 - phosphatase PAP2 family protein, at 343,689 to 344,306 _RS04655 HMPREF1058_RS04650: HMPREF1058_RS04650 - 9-O-acetylesterase, at 344,344 to 346,260 _RS04650 Position (kb) 343 344 345Strain fitness (log2 ratio) -2 -1 0 1 2 3at 342.767 kb on + strand, within HMPREF1058_RS04660at 342.856 kb on + strand, within HMPREF1058_RS04660at 342.889 kb on + strand, within HMPREF1058_RS04660at 342.889 kb on + strand, within HMPREF1058_RS04660at 342.956 kb on - strand, within HMPREF1058_RS04660at 342.956 kb on - strand, within HMPREF1058_RS04660at 343.006 kb on + strand, within HMPREF1058_RS04660at 343.006 kb on + strand, within HMPREF1058_RS04660at 343.008 kb on + strand, within HMPREF1058_RS04660at 343.148 kb on - strand, within HMPREF1058_RS04660at 343.148 kb on - strand, within HMPREF1058_RS04660at 343.167 kb on + strand, within HMPREF1058_RS04660at 343.168 kb on - strand, within HMPREF1058_RS04660at 343.197 kb on + strandat 343.198 kb on - strandat 343.224 kb on - strandat 343.331 kb on - strandat 343.394 kb on - strandat 343.447 kb on + strandat 343.447 kb on + strandat 343.447 kb on + strandat 343.448 kb on - strandat 343.448 kb on - strandat 343.448 kb on - strandat 343.450 kb on + strandat 343.451 kb on - strandat 343.451 kb on - strandat 343.451 kb on - strandat 343.523 kb on - strandat 343.543 kb on + strandat 343.580 kb on + strandat 343.636 kb on + strandat 343.678 kb on + strandat 343.678 kb on + strandat 343.733 kb on - strandat 343.748 kb on + strandat 343.759 kb on - strand, within HMPREF1058_RS04655at 343.810 kb on + strand, within HMPREF1058_RS04655at 343.811 kb on - strand, within HMPREF1058_RS04655at 343.813 kb on - strand, within HMPREF1058_RS04655at 343.816 kb on + strand, within HMPREF1058_RS04655at 343.816 kb on + strand, within HMPREF1058_RS04655at 343.817 kb on - strand, within HMPREF1058_RS04655at 343.834 kb on + strand, within HMPREF1058_RS04655at 343.860 kb on + strand, within HMPREF1058_RS04655at 343.861 kb on - strand, within HMPREF1058_RS04655at 343.869 kb on + strand, within HMPREF1058_RS04655at 343.869 kb on + strand, within HMPREF1058_RS04655at 343.897 kb on + strand, within HMPREF1058_RS04655at 343.897 kb on + strand, within HMPREF1058_RS04655at 343.921 kb on + strand, within HMPREF1058_RS04655at 343.922 kb on - strand, within HMPREF1058_RS04655at 343.990 kb on + strand, within HMPREF1058_RS04655at 344.100 kb on + strand, within HMPREF1058_RS04655at 344.101 kb on - strand, within HMPREF1058_RS04655at 344.138 kb on - strand, within HMPREF1058_RS04655at 344.141 kb on - strand, within HMPREF1058_RS04655at 344.141 kb on - strand, within HMPREF1058_RS04655at 344.145 kb on + strand, within HMPREF1058_RS04655at 344.158 kb on + strand, within HMPREF1058_RS04655at 344.159 kb on - strand, within HMPREF1058_RS04655at 344.233 kb on + strand, within HMPREF1058_RS04655at 344.291 kb on + strandat 344.293 kb on + strandat 344.293 kb on + strandat 344.294 kb on - strandat 344.301 kb on - strandat 344.305 kb on - strandat 344.309 kb on - strandat 344.323 kb on - strandat 344.375 kb on + strandat 344.389 kb on - strandat 344.406 kb on - strandat 344.421 kb on - strandat 344.439 kb on - strandat 344.441 kb on + strandat 344.442 kb on - strandat 344.518 kb on - strandat 344.529 kb on + strandat 344.530 kb on - strandat 344.564 kb on + strand, within HMPREF1058_RS04650at 344.658 kb on - strand, within HMPREF1058_RS04650at 344.665 kb on + strand, within HMPREF1058_RS04650at 344.668 kb on - strand, within HMPREF1058_RS04650at 344.696 kb on + strand, within HMPREF1058_RS04650at 344.697 kb on - strand, within HMPREF1058_RS04650at 344.703 kb on - strand, within HMPREF1058_RS04650at 344.719 kb on - strand, within HMPREF1058_RS04650at 344.778 kb on + strand, within HMPREF1058_RS04650at 344.883 kb on - strand, within HMPREF1058_RS04650at 344.886 kb on + strand, within HMPREF1058_RS04650at 344.886 kb on + strand, within HMPREF1058_RS04650at 344.886 kb on + strand, within HMPREF1058_RS04650at 344.886 kb on + strand, within HMPREF1058_RS04650at 344.887 kb on - strand, within HMPREF1058_RS04650at 344.887 kb on - strand, within HMPREF1058_RS04650at 344.891 kb on + strand, within HMPREF1058_RS04650at 344.891 kb on + strand, within HMPREF1058_RS04650at 344.891 kb on + strand, within HMPREF1058_RS04650at 344.935 kb on + strand, within HMPREF1058_RS04650at 344.936 kb on - strand, within HMPREF1058_RS04650at 344.936 kb on - strand, within HMPREF1058_RS04650at 345.166 kb on - strand, within HMPREF1058_RS04650at 345.192 kb on - strand, within HMPREF1058_RS04650at 345.216 kb on + strand, within HMPREF1058_RS04650at 345.216 kb on + strand, within HMPREF1058_RS04650at 345.217 kb on - strand, within HMPREF1058_RS04650at 345.217 kb on - strand, within HMPREF1058_RS04650at 345.284 kb on + strand, within HMPREF1058_RS04650at 345.286 kb on + strand, within HMPREF1058_RS04650at 345.287 kb on - strand, within HMPREF1058_RS04650at 345.289 kb on + strand, within HMPREF1058_RS04650at 345.306 kb on - strand, within HMPREF1058_RS04650

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Per-strain Table

Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
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342,767 + HMPREF1058_RS04660 0.80 -0.4
342,856 + HMPREF1058_RS04660 0.82 -0.3
342,889 + HMPREF1058_RS04660 0.83 +0.2
342,889 + HMPREF1058_RS04660 0.83 +0.8
342,956 - HMPREF1058_RS04660 0.84 -0.7
342,956 - HMPREF1058_RS04660 0.84 +1.0
343,006 + HMPREF1058_RS04660 0.86 +0.3
343,006 + HMPREF1058_RS04660 0.86 +2.1
343,008 + HMPREF1058_RS04660 0.86 +1.5
343,148 - HMPREF1058_RS04660 0.89 -1.3
343,148 - HMPREF1058_RS04660 0.89 -0.8
343,167 + HMPREF1058_RS04660 0.90 -0.1
343,168 - HMPREF1058_RS04660 0.90 +0.3
343,197 + -1.0
343,198 - -0.3
343,224 - +1.3
343,331 - +0.2
343,394 - -1.0
343,447 + +0.2
343,447 + +0.7
343,447 + +0.6
343,448 - +0.4
343,448 - -0.1
343,448 - -0.5
343,450 + +1.5
343,451 - -0.2
343,451 - +0.7
343,451 - -0.3
343,523 - +1.0
343,543 + -0.4
343,580 + +0.9
343,636 + +0.7
343,678 + -2.6
343,678 + +0.4
343,733 - -1.1
343,748 + +0.5
343,759 - HMPREF1058_RS04655 0.11 +0.1
343,810 + HMPREF1058_RS04655 0.20 +1.9
343,811 - HMPREF1058_RS04655 0.20 -0.8
343,813 - HMPREF1058_RS04655 0.20 -0.4
343,816 + HMPREF1058_RS04655 0.21 -1.0
343,816 + HMPREF1058_RS04655 0.21 +0.1
343,817 - HMPREF1058_RS04655 0.21 -0.7
343,834 + HMPREF1058_RS04655 0.23 -1.0
343,860 + HMPREF1058_RS04655 0.28 +0.3
343,861 - HMPREF1058_RS04655 0.28 +0.8
343,869 + HMPREF1058_RS04655 0.29 +0.1
343,869 + HMPREF1058_RS04655 0.29 -0.2
343,897 + HMPREF1058_RS04655 0.34 +0.5
343,897 + HMPREF1058_RS04655 0.34 +0.6
343,921 + HMPREF1058_RS04655 0.38 +0.5
343,922 - HMPREF1058_RS04655 0.38 +1.3
343,990 + HMPREF1058_RS04655 0.49 -0.7
344,100 + HMPREF1058_RS04655 0.67 -0.4
344,101 - HMPREF1058_RS04655 0.67 -0.7
344,138 - HMPREF1058_RS04655 0.73 -0.5
344,141 - HMPREF1058_RS04655 0.73 -0.2
344,141 - HMPREF1058_RS04655 0.73 -0.2
344,145 + HMPREF1058_RS04655 0.74 +0.4
344,158 + HMPREF1058_RS04655 0.76 +1.9
344,159 - HMPREF1058_RS04655 0.76 +0.5
344,233 + HMPREF1058_RS04655 0.88 -1.1
344,291 + +0.0
344,293 + -0.2
344,293 + +0.6
344,294 - -0.8
344,301 - -0.5
344,305 - -0.3
344,309 - +0.3
344,323 - +0.1
344,375 + +0.3
344,389 - +0.3
344,406 - +1.5
344,421 - +1.5
344,439 - -0.4
344,441 + -0.3
344,442 - -1.5
344,518 - -0.7
344,529 + -1.3
344,530 - -0.5
344,564 + HMPREF1058_RS04650 0.11 +1.0
344,658 - HMPREF1058_RS04650 0.16 -1.0
344,665 + HMPREF1058_RS04650 0.17 -0.2
344,668 - HMPREF1058_RS04650 0.17 +3.5
344,696 + HMPREF1058_RS04650 0.18 -0.5
344,697 - HMPREF1058_RS04650 0.18 -0.1
344,703 - HMPREF1058_RS04650 0.19 -0.8
344,719 - HMPREF1058_RS04650 0.20 -0.3
344,778 + HMPREF1058_RS04650 0.23 +0.3
344,883 - HMPREF1058_RS04650 0.28 +0.2
344,886 + HMPREF1058_RS04650 0.28 -0.9
344,886 + HMPREF1058_RS04650 0.28 +1.1
344,886 + HMPREF1058_RS04650 0.28 -0.1
344,886 + HMPREF1058_RS04650 0.28 +0.4
344,887 - HMPREF1058_RS04650 0.28 -0.3
344,887 - HMPREF1058_RS04650 0.28 -0.1
344,891 + HMPREF1058_RS04650 0.29 +1.3
344,891 + HMPREF1058_RS04650 0.29 +0.3
344,891 + HMPREF1058_RS04650 0.29 -0.3
344,935 + HMPREF1058_RS04650 0.31 -0.1
344,936 - HMPREF1058_RS04650 0.31 +0.5
344,936 - HMPREF1058_RS04650 0.31 +0.8
345,166 - HMPREF1058_RS04650 0.43 -0.2
345,192 - HMPREF1058_RS04650 0.44 +0.5
345,216 + HMPREF1058_RS04650 0.45 -0.5
345,216 + HMPREF1058_RS04650 0.45 +0.4
345,217 - HMPREF1058_RS04650 0.46 -1.1
345,217 - HMPREF1058_RS04650 0.46 +0.3
345,284 + HMPREF1058_RS04650 0.49 +0.5
345,286 + HMPREF1058_RS04650 0.49 +0.3
345,287 - HMPREF1058_RS04650 0.49 -1.5
345,289 + HMPREF1058_RS04650 0.49 +0.6
345,306 - HMPREF1058_RS04650 0.50 -0.1

Or see this region's nucleotide sequence